View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_low_99 (Length: 207)

Name: NF17168_low_99

Description: NF17168

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17168_low_99

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 133; E-Value: 2e-69

Query Start/End: Original strand, 14 - 188

Target Start/End: Original strand, 55174175 - 55174349

Alignment:

Q	14	catcaatcaatcttatgaatccatcatttgttgttgttatattattgtaatgatcatggatgtagtaattnnnnnnnnnnccatgaatgaattatacatc	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55174175	catcaatcaatcttatgaatccatcatctgttgttattatattattgtaatgatcatggatgtagtgattaaataaaaaaccatgaatgaattatacatc	55174274	T

Q	114	aggggtgctgcgagtgtaatggatggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttacc	188	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55174275	aggggtgctgcgagtgtaatggatggaaccggagaagaggagctcgcgtcttccattgacaaagagtgatttacc	55174349	T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 107 - 151

Target Start/End: Complemental strand, 27720302 - 27720258

Alignment:

Q	107	atacatcaggggtgctgcgagtgtaatggatggaaccggagaaga	151	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27720302	atacatcaggggtgcttcgtggataatggatggaaccggagaaga	27720258	T

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