View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17169_high_13 (Length: 284)
Name: NF17169_high_13
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 36997301 - 36997566
Alignment:
| Q |
1 |
ttctagagttttagtatttggcattttttcgcagtaaatcttgtaattaccttgttggcaatgagtttctctaaggcttcggttccattttctttcatat |
100 |
Q |
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| T |
36997301 |
ttctagagttttagtatttggcattttttcgcaataaatcttgtaattaccttgttggcaatgagtttctctaaggcttcggttccattttctttcatat |
36997400 |
T |
|
| Q |
101 |
atctctctgcatgcattaaaaagttatctttctcaatagaacatttcgtccggtagtcatttaacctccatgtgacgatgtggggtttcatggtgagaat |
200 |
Q |
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| T |
36997401 |
gtctctctgcatgcattaaaaagttgtctttctcaacagaacatttcgtccggtagtcatttaaccaccatgtgacgatgtggggtttcatggtgagaat |
36997500 |
T |
|
| Q |
201 |
aagtttattataaacataagaagctcgtccaaagtccggtatgatgaggaagaagatggccattag |
266 |
Q |
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| T |
36997501 |
aagtttattataaacataagaagctcgtccaaagtccggtatgatgaggaagaagatggccattag |
36997566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 258
Target Start/End: Original strand, 36987620 - 36987836
Alignment:
| Q |
42 |
tgtaattaccttgttggcaatgagtttctctaaggcttcggttccattttctttcatatatctctctgcatgcattaaaaagttatctttctcaatagaa |
141 |
Q |
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||||||||||||| | ||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| ||||||||||| | || |
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| T |
36987620 |
tgtaattaccttgctagcaatgagtttctctaaggcttcagttccgttctcttgcatatatctctctgcatgcattaaaaagtcatctttctcaacaaaa |
36987719 |
T |
|
| Q |
142 |
catttcgtccggtagtcatttaacctccatgtgacgatgtggggtttcatggtgagaataagtttattataaacataagaagctcgtccaaagtccggta |
241 |
Q |
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| T |
36987720 |
cacttcctccagtagttatttaacctccatgagactatttgcagtttcatggggcgaatgaggttattataaacatatgaagctcgtccaaagtctggta |
36987819 |
T |
|
| Q |
242 |
tgatgaggaagaagatg |
258 |
Q |
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| T |
36987820 |
tgatgagacagaagatg |
36987836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 258
Target Start/End: Original strand, 36981487 - 36981698
Alignment:
| Q |
47 |
ttaccttgttggcaatgagtttctctaaggcttcggttccattttctttcatatatctctctgcatgcattaaaaagttatctttctcaatagaacattt |
146 |
Q |
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|||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | | || || |
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| T |
36981487 |
ttaccttgctagcaatgagtttctctaaggcttcagttccattctctttcatatatatctctgcatgcattaaaaagttatctttctcaaaaaaccactt |
36981586 |
T |
|
| Q |
147 |
cgtccggtagtcatttaacctccatgtgacgatgtggggtttcatggtgagaataagtttattataaacataagaagctcgtccaaagtccggtatgatg |
246 |
Q |
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| T |
36981587 |
cttccaggagttatttaacccccatgtgactatgtgcggtttcagaaagcgactgagtttattataaacataagaagctcgtccaaagtctggtatgatg |
36981686 |
T |
|
| Q |
247 |
aggaagaagatg |
258 |
Q |
| |
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|| |||||||| |
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| T |
36981687 |
agccagaagatg |
36981698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 42 - 248
Target Start/End: Original strand, 37001162 - 37001368
Alignment:
| Q |
42 |
tgtaattaccttgttggcaatgagtttctctaaggcttcggttccattttctttcatatatctctctgcatgcattaaaaagttatctttctcaatagaa |
141 |
Q |
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||||||||||||| | | ||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | || |
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| T |
37001162 |
tgtaattaccttgctagaaatgagtttctgtaaggtttcagttccattctctttcatatatctctctgcatgcagtaaaaagttatctttctcagcaaaa |
37001261 |
T |
|
| Q |
142 |
catttcgtccggtagtcatttaacctccatgtgacgatgtggggtttcatggtgagaataagtttattataaacataagaagctcgtccaaagtccggta |
241 |
Q |
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|| | ||| |||| |||||||||||||||||| || || ||| | ||| | ||||||| |||||||||||||||| || ||||||||| ||||||| |
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| T |
37001262 |
caatctctccagtagctatttaacctccatgtgactatttgcggtattgtggagcgaataaggttattataaacataagtagttcgtccaaaatccggta |
37001361 |
T |
|
| Q |
242 |
tgatgag |
248 |
Q |
| |
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||||||| |
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|
| T |
37001362 |
tgatgag |
37001368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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