View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17169_high_16 (Length: 247)
Name: NF17169_high_16
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 886960 - 886747
Alignment:
| Q |
15 |
aatattggcaatcaatcggttaacctttggcgatgaaaataaataaattttccatgttgaaaacttctgattccaacattaacacatgaacctcttgtag |
114 |
Q |
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| T |
886960 |
aatattggcaatcaatcggttaacctttggcgatgaaaataaataaattttccatgttgaaaacttctgattccaacattaacacatgaacctcttgtag |
886861 |
T |
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| Q |
115 |
gtaagagattcatatgaaattaagaacaattgatcctgattttgccacttgtaagctcctaattgaacgaaatgtgtttagctatatagagatacaaata |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
886860 |
gtaagagattcatatgaaattaagaataattgatcctgattttgccacttgtaagctcctaattgaacgaaatgtgtttagctatatagaggtacaaata |
886761 |
T |
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| Q |
215 |
atcgttaccctgaa |
228 |
Q |
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|||||||||||||| |
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| T |
886760 |
atcgttaccctgaa |
886747 |
T |
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