View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17169_high_3 (Length: 490)
Name: NF17169_high_3
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 26764734 - 26764386
Alignment:
| Q |
18 |
gataggatatagaaaatcgcagaatagaataaggaaaggtgtgagtttctattatatagaggttgcacttgcggtacgtaaggaattnnnnnnnnnnnnn |
117 |
Q |
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| T |
26764734 |
gataggatatagaaaatcgcagaatagaataaggaaaggtgtgagtttctattatatagaggttgcacttgcggtacgtaaggaattaaaaaaagtaaaa |
26764635 |
T |
|
| Q |
118 |
nngattaagattgaattgagtacgcgctatcgattacttaggagagaggtaaggtttggtaacaaatagataaatgacacgtgggttttgttcgttcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26764634 |
aagattaagattgaattgagtacgcgctatcgattacttaggagagaggtaaggtttggtaacaaatagataaatgacacgtgggttttgttcgttcaaa |
26764535 |
T |
|
| Q |
218 |
tttgaatgacggttataagaaactgatagttaggattttcctttactgttaggttagaaaattgctttcccaatcaaaattgctcattcccacatataac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26764534 |
tttgaatgacggttataagaaactgatagttaggattttcctttactgttaggttagaaaattgctttcccaatcaaaattgctcattctcacatataac |
26764435 |
T |
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| Q |
318 |
tagcgcaaataacaacaaacgtgctaagaggtataaattgaggattttg |
366 |
Q |
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| T |
26764434 |
tagcgaaaataacaacaaacgtgttaagaggtataaattgaggattttg |
26764386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 365 - 471
Target Start/End: Complemental strand, 26764304 - 26764198
Alignment:
| Q |
365 |
tggaccactataaacaacaatcagatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccatctcgcctct |
464 |
Q |
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||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
26764304 |
tggaccactataaacaacaattagattaatcaagttaacatatcctattatacactacatacactagattacccctctatatatttactatctcgtctct |
26764205 |
T |
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| Q |
465 |
tatgtcc |
471 |
Q |
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||||||| |
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| T |
26764204 |
tatgtcc |
26764198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 32138813 - 32138743
Alignment:
| Q |
387 |
agatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccatct |
457 |
Q |
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|||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32138813 |
agattaatcaagttcacatatcctattctacactatatatactagattacccctctatatatttaccatct |
32138743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 454
Target Start/End: Original strand, 48135969 - 48136036
Alignment:
| Q |
387 |
agatcaatcaagtccacatatcctattatacactacatacactagattacccctctatatatttacca |
454 |
Q |
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|||| |||||||||||||||||||||| |||| |||||| | ||||||| |||||||||||||||||| |
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| T |
48135969 |
agattaatcaagtccacatatcctattctacattacatatattagattatccctctatatatttacca |
48136036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 19763506 - 19763569
Alignment:
| Q |
392 |
aatcaagtccacatatcctattatacactacatacactagattacccctctatatatttaccat |
455 |
Q |
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||||||||||||||||| |||| ||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
19763506 |
aatcaagtccacatatcatattctacactacatatactagattatcgctctatatatttaccat |
19763569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 20776081 - 20776126
Alignment:
| Q |
387 |
agatcaatcaagtccacatatcctattatacactacatacactaga |
432 |
Q |
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|||| |||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
20776081 |
agattaatcaagtccacatattctattctacactacatatactaga |
20776126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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