View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17169_low_1 (Length: 517)
Name: NF17169_low_1
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Original strand, 31251903 - 31252393
Alignment:
| Q |
11 |
caaaggaatcattaaatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
31251903 |
caaaggaatcattaaatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagtaaagaaggttttgtcctaaatccttacatgttatt |
31252002 |
T |
|
| Q |
111 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgnnnnnnnatgagttcacagaatgtgacagcttcttcaaaaactcattgttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31252003 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaaaactcattgttt |
31252102 |
T |
|
| Q |
211 |
atagtgggagagattggtggaaatgatattttttatcatctttctaaaactattacagaactacgagagaaagttcctttgatggttgaatcaatcaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31252103 |
atagtgggagagattggtggaaatgatattttttatcatctttctaaaactattacagaactacgagagaaagttcctttgatggttgaatcaatcaaaa |
31252202 |
T |
|
| Q |
311 |
atatcaccaatgtatgttacacaaatcttaagtaattaaatgattacgtattagcnnnnnnntaaataactgttgacttcaattgtagaataattgtgtt |
410 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
31252203 |
ataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagc-aaaaaataaataacttttgacttcaattgtagaataattgtgtt |
31252301 |
T |
|
| Q |
411 |
taagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaagg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31252302 |
taagttataggtaatattgaataaataatggtcttggaaaattgtaatggatatttatttaattatgtttgtcaggctttaattgaagaagg |
31252393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Complemental strand, 13003683 - 13003193
Alignment:
| Q |
11 |
caaaggaatcattaaatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatt |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13003683 |
caaaggaatcattagatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatt |
13003584 |
T |
|
| Q |
111 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgnnnnnnnatgagttcacagaatgtgacagcttcttcaaaaactcattgttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
13003583 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaaaaatcattgttt |
13003484 |
T |
|
| Q |
211 |
atagtgggagagattggtggaaatgatattttttatcatctttctaaaactattacagaactacgagagaaagttcctttgatggttgaatcaatcaaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13003483 |
atagtgggagagattggtggaaatgatattttttatcatctttctaaaactattaaagaactacgagagaaagttcctttgatggttgaatcaatcaaaa |
13003384 |
T |
|
| Q |
311 |
atatcaccaatgtatgttacacaaatcttaagtaattaaatgattacgtattagcnnnnnnntaaataactgttgacttcaattgtagaataattgtgtt |
410 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
13003383 |
ataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagc-aaaaaataaataacttttgacttcaattgtagaataattgtgtt |
13003285 |
T |
|
| Q |
411 |
taagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaagg |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13003284 |
taagttataggtaatattgaataaataatggtcttggaaaaatgtaatagatatttatttaattatgtttgtcaggctttaattgaagaagg |
13003193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 31094472 - 31093993
Alignment:
| Q |
19 |
tcattaaatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatttttgtgtg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
31094472 |
tcattaattgtgcaatttgattggtttaagaagctaaaacccttattgtgtaaaaacaaagaaggttttgtcctaactccttgcttgttatttttgtgtg |
31094373 |
T |
|
| Q |
119 |
atataaatggtttatcatctatatgactaacaaaacttttgnnnnnnnat---gagttcacagaatgtgacagcttcttcaaaaactcattgtttatagt |
215 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
31094372 |
atataaatgatttatcatcaatatgactaacaaaactttttttttcttcttgtgagttcacagaatgtgatagcttcttcaaaaaatcgttgtttatagt |
31094273 |
T |
|
| Q |
216 |
gggagagattggtggaaatgatattttttatcatctttctaaaactattacagaactacgagagaaagttcctttgatggttgaatcaatcaaaaatatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||| |||||| ||||| ||||| ||||||||||||| | |
|
|
| T |
31094272 |
gggagagattggtggaaatgatattttttaccatcttttcaaaactattacagaactgcaagagatagttcccttgatagttgattcaatcaaaaatacc |
31094173 |
T |
|
| Q |
316 |
accaatgtatgttacacaaatcttaagtaattaaatgattacgtattagcnnnnnnntaaataactgttgacttcaattgtagaataattgtgtttaagt |
415 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||| | | ||||| || ||| || ||| |||||||||||||| ||||||||| ||| |
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|
| T |
31094172 |
accattgtatgttatacaaaacttaagtaattaaatgttgaagtattggca-------aaaaaaaagtttacttcaattgtagatatattgtgtttgagt |
31094080 |
T |
|
| Q |
416 |
tataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaagg |
502 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
31094079 |
tataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgtatatcaggctttaattgaagaagg |
31093993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 29 - 329
Target Start/End: Original strand, 27205984 - 27206285
Alignment:
| Q |
29 |
tgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatgg |
128 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| ||| ||||| ||||||||| ||| |||||| | |
|
|
| T |
27205984 |
tgcaatttgattggtttaagaagcttaaaccctcatcgtgtaaaactaaagaaggttttgtcctaactccctgcatactatttttgtttgaaataaattg |
27206083 |
T |
|
| Q |
129 |
tttatcatctatatgactaacaaaacttttgnnnnnnnatgagttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggt |
228 |
Q |
| |
|
||| || | || |||||||||||||| |||| |||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
27206084 |
tttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggt |
27206183 |
T |
|
| Q |
229 |
ggaaatgatattttttatcatctttctaaaactattacagaactacgagagaaagttcctttgatggttgaatcaa-tcaaaaatatcaccaatgtatgt |
327 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||||||||| ||||||| ||||| ||||| ||||| |||| | ||||||| ||||||||||||| |
|
|
| T |
27206184 |
agaaatgacgttttattcgatctttctaaaactattacagaactgcgagagatggttcccttgatcgttgagtcaattaaaaaataccaccaatgtatgt |
27206283 |
T |
|
| Q |
328 |
ta |
329 |
Q |
| |
|
|| |
|
|
| T |
27206284 |
ta |
27206285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 175 - 357
Target Start/End: Original strand, 16162788 - 16162970
Alignment:
| Q |
175 |
acagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgatattttttatcatctttctaaaactattacagaactac |
274 |
Q |
| |
|
||||| ||||| |||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||||| | |
|
|
| T |
16162788 |
acagagtgtgatagcttcttcaaacgatcattatttatagtgggagaaattggtggaaatgatgtttttttacatatttctaaaactattacagaactgc |
16162887 |
T |
|
| Q |
275 |
gagagaaagttcctttgatggttgaatcaatcaaaaatatcaccaatgtatgttaca-caaatcttaagtaattaaatgattac |
357 |
Q |
| |
|
|||| | ||||| ||||| ||||||||||| | || | |||||||||| |||| | ||||| ||||||||||||||| |||| |
|
|
| T |
16162888 |
gagaaattgttcccttgattgttgaatcaattacgaagaccaccaatgtaggttatatcaaat-ttaagtaattaaatgtttac |
16162970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25658207 - 25658257
Alignment:
| Q |
187 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
237 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25658207 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25658257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25664612 - 25664662
Alignment:
| Q |
187 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
237 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25664612 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25664662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25671017 - 25671067
Alignment:
| Q |
187 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
237 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25671017 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25671067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25677422 - 25677472
Alignment:
| Q |
187 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
237 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25677422 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25677472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 25684096 - 25684146
Alignment:
| Q |
187 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
237 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25684096 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25684146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 27228714 - 27228810
Alignment:
| Q |
19 |
tcattaaatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatttttgt |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| || |||||||| |||||||||||||| ||| | ||||| | |||||||||| |
|
|
| T |
27228714 |
tcattaaatgtgcaatttgaatggtttaagaatataaaaccatcattgtgtaaaagtgaagaaggttttgtcataactacttgcgtattatttttgt |
27228810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 27206363 - 27206420
Alignment:
| Q |
445 |
tggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaagg |
502 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
27206363 |
tggaaaaatgtaatagtcatttatttaattttgtttcacaggctttaattgaagaagg |
27206420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 502
Target Start/End: Original strand, 27228967 - 27229080
Alignment:
| Q |
387 |
cttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcagg |
486 |
Q |
| |
|
||||||||||| ||||||| | ||| |||||||| | || |||||||||||| ||||||| || | |||||| ||||| |||||||||||| ||| |
|
|
| T |
27228967 |
cttcaattgtataataattctttttgagttatagat--tagtgaataaataataatcttggataaatataatagtcatttaattaattatgttttctagg |
27229064 |
T |
|
| Q |
487 |
ctttaattgaagaagg |
502 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
27229065 |
cattgattgaagaagg |
27229080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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