View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_10 (Length: 344)

Name: NF17169_low_10
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_10
NF17169_low_10
[»] chr8 (20 HSPs)
chr8 (176-332)||(5957853-5958010)
chr8 (176-312)||(42354508-42354645)
chr8 (196-332)||(504061-504198)
chr8 (196-332)||(34012236-34012373)
chr8 (177-332)||(40423864-40424020)
chr8 (196-314)||(12831088-12831207)
chr8 (196-329)||(23122537-23122671)
chr8 (178-332)||(15197356-15197511)
chr8 (178-332)||(44507010-44507164)
chr8 (196-332)||(14547945-14548082)
chr8 (176-332)||(37038502-37038659)
chr8 (178-301)||(9122239-9122363)
chr8 (176-314)||(8841352-8841491)
chr8 (176-314)||(10284551-10284690)
chr8 (176-314)||(43414501-43414640)
chr8 (196-332)||(1179880-1180017)
chr8 (176-315)||(32032764-32032904)
chr8 (245-312)||(15258919-15258986)
chr8 (246-301)||(17443879-17443934)
chr8 (251-332)||(10621083-10621164)
[»] chr7 (28 HSPs)
chr7 (176-315)||(16374744-16374884)
chr7 (178-324)||(4999436-4999583)
chr7 (196-324)||(19436127-19436256)
chr7 (196-332)||(19329865-19330002)
chr7 (245-332)||(18207203-18207289)
chr7 (179-332)||(32564349-32564503)
chr7 (176-301)||(35522930-35523056)
chr7 (196-332)||(3784018-3784155)
chr7 (196-332)||(8080323-8080460)
chr7 (200-332)||(35137556-35137689)
chr7 (197-301)||(40957761-40957866)
chr7 (176-328)||(41423709-41423862)
chr7 (176-334)||(2318161-2318322)
chr7 (174-332)||(7727929-7728088)
chr7 (197-311)||(32951434-32951549)
chr7 (251-332)||(36362049-36362130)
chr7 (196-295)||(11044238-11044338)
chr7 (178-332)||(7389412-7389566)
chr7 (251-314)||(36361909-36361972)
chr7 (245-332)||(39255914-39256000)
chr7 (204-301)||(38837271-38837369)
chr7 (251-332)||(3434585-3434666)
chr7 (176-332)||(22343384-22343541)
chr7 (251-314)||(38267081-38267144)
chr7 (251-301)||(3694421-3694471)
chr7 (195-292)||(31735940-31736038)
chr7 (176-332)||(38044220-38044377)
chr7 (204-311)||(26296688-26296796)
[»] chr2 (27 HSPs)
chr2 (196-314)||(7465675-7465794)
chr2 (178-332)||(19930742-19930897)
chr2 (195-332)||(33436039-33436177)
chr2 (196-332)||(28863478-28863615)
chr2 (196-314)||(17473061-17473180)
chr2 (215-333)||(17819963-17820082)
chr2 (196-324)||(32505588-32505717)
chr2 (196-324)||(10249322-10249451)
chr2 (176-332)||(40613822-40613979)
chr2 (176-276)||(44152006-44152107)
chr2 (178-324)||(4060716-4060863)
chr2 (176-301)||(20700869-20700995)
chr2 (251-332)||(5574484-5574565)
chr2 (196-314)||(13438384-13438503)
chr2 (178-332)||(40701501-40701656)
chr2 (196-332)||(9058503-9058640)
chr2 (177-332)||(2997408-2997564)
chr2 (245-301)||(3154197-3154253)
chr2 (172-332)||(41758608-41758771)
chr2 (205-314)||(42257234-42257344)
chr2 (204-332)||(30915486-30915615)
chr2 (172-271)||(21301416-21301516)
chr2 (176-301)||(3034903-3035029)
chr2 (176-301)||(36168890-36169016)
chr2 (250-314)||(27864745-27864809)
chr2 (176-315)||(38732394-38732534)
chr2 (245-328)||(41575164-41575248)
[»] chr1 (27 HSPs)
chr1 (119-173)||(23186354-23186408)
chr1 (196-332)||(9474816-9474953)
chr1 (196-314)||(41758846-41758965)
chr1 (196-332)||(27564675-27564812)
chr1 (196-332)||(38632261-38632398)
chr1 (171-329)||(5958915-5959074)
chr1 (176-301)||(32813301-32813427)
chr1 (196-301)||(50630512-50630618)
chr1 (196-332)||(2581938-2582075)
chr1 (18-67)||(23186406-23186455)
chr1 (196-332)||(37649221-37649358)
chr1 (176-332)||(45044480-45044637)
chr1 (196-332)||(47452260-47452397)
chr1 (196-332)||(48716222-48716359)
chr1 (176-332)||(51898603-51898760)
chr1 (173-332)||(23597008-23597168)
chr1 (196-332)||(8346327-8346465)
chr1 (196-314)||(26274473-26274589)
chr1 (176-301)||(44454033-44454163)
chr1 (176-332)||(47748466-47748622)
chr1 (222-301)||(44548342-44548422)
chr1 (251-332)||(3000342-3000423)
chr1 (196-332)||(37926378-37926515)
chr1 (251-332)||(38595177-38595258)
chr1 (255-312)||(48489343-48489400)
chr1 (174-270)||(49811445-49811542)
chr1 (204-332)||(50590948-50591077)
[»] chr6 (14 HSPs)
chr6 (176-332)||(31952950-31953107)
chr6 (196-314)||(11427659-11427778)
chr6 (178-332)||(17598577-17598732)
chr6 (176-301)||(31976302-31976428)
chr6 (173-332)||(28536405-28536563)
chr6 (196-332)||(32869701-32869838)
chr6 (195-314)||(23128066-23128186)
chr6 (178-332)||(22880580-22880735)
chr6 (196-301)||(29857881-29857987)
chr6 (246-315)||(9379703-9379772)
chr6 (176-332)||(4231571-4231728)
chr6 (245-314)||(12732523-12732592)
chr6 (176-332)||(15989962-15990119)
chr6 (176-332)||(30341280-30341437)
[»] chr5 (23 HSPs)
chr5 (196-332)||(18520824-18520961)
chr5 (174-314)||(35943810-35943951)
chr5 (195-334)||(39557456-39557596)
chr5 (176-332)||(6679721-6679878)
chr5 (196-332)||(33149578-33149715)
chr5 (178-332)||(35785222-35785377)
chr5 (176-301)||(26720570-26720696)
chr5 (176-301)||(26990319-26990445)
chr5 (176-301)||(31009042-31009168)
chr5 (196-332)||(14831837-14831974)
chr5 (196-332)||(40145430-40145567)
chr5 (196-314)||(36732882-36733001)
chr5 (196-332)||(2740297-2740434)
chr5 (251-332)||(28177798-28177879)
chr5 (196-332)||(33825264-33825401)
chr5 (176-283)||(2177436-2177544)
chr5 (176-301)||(21370058-21370184)
chr5 (248-301)||(25831339-25831392)
chr5 (171-301)||(9603867-9603998)
chr5 (196-314)||(13811693-13811812)
chr5 (176-314)||(15409530-15409669)
chr5 (171-332)||(3921180-3921342)
chr5 (176-332)||(2252088-2252245)
[»] chr4 (28 HSPs)
chr4 (204-332)||(11511410-11511539)
chr4 (196-332)||(41236370-41236507)
chr4 (178-332)||(6034067-6034222)
chr4 (196-314)||(48182989-48183108)
chr4 (176-301)||(41823936-41824062)
chr4 (176-332)||(29239909-29240066)
chr4 (177-274)||(47104625-47104723)
chr4 (174-334)||(29977906-29978067)
chr4 (176-332)||(50052348-50052505)
chr4 (178-314)||(23608276-23608413)
chr4 (196-314)||(24995047-24995166)
chr4 (176-332)||(50526091-50526248)
chr4 (176-332)||(50813812-50813969)
chr4 (177-332)||(17983664-17983820)
chr4 (243-283)||(29535448-29535488)
chr4 (250-332)||(3481677-3481759)
chr4 (180-301)||(18768972-18769093)
chr4 (204-301)||(42044315-42044413)
chr4 (177-314)||(56300086-56300224)
chr4 (205-301)||(28480217-28480314)
chr4 (205-301)||(28481092-28481189)
chr4 (205-301)||(28481967-28482064)
chr4 (176-332)||(40574802-40574959)
chr4 (204-314)||(480395-480506)
chr4 (245-324)||(48647716-48647795)
chr4 (251-301)||(29234241-29234291)
chr4 (176-332)||(19670636-19670793)
chr4 (245-301)||(18769163-18769219)
[»] chr3 (27 HSPs)
chr3 (196-314)||(9563040-9563159)
chr3 (172-332)||(13897971-13898132)
chr3 (176-332)||(14623759-14623916)
chr3 (196-332)||(49607437-49607574)
chr3 (172-277)||(43746417-43746523)
chr3 (176-314)||(35536667-35536806)
chr3 (176-332)||(20764835-20764992)
chr3 (204-314)||(33118798-33118910)
chr3 (176-283)||(35965702-35965810)
chr3 (196-332)||(53982034-53982171)
chr3 (245-301)||(25407137-25407193)
chr3 (176-314)||(8076434-8076573)
chr3 (196-314)||(33644241-33644360)
chr3 (178-332)||(54868817-54868972)
chr3 (172-315)||(1758375-1758516)
chr3 (251-332)||(17470428-17470509)
chr3 (176-324)||(24699875-24700023)
chr3 (176-301)||(26141450-26141578)
chr3 (176-332)||(36331249-36331406)
chr3 (169-301)||(51419273-51419406)
chr3 (176-274)||(30801653-30801752)
chr3 (176-314)||(35093626-35093765)
chr3 (251-332)||(48587087-48587168)
chr3 (204-332)||(52629323-52629452)
chr3 (252-332)||(27714888-27714968)
chr3 (176-314)||(8956803-8956942)
chr3 (176-314)||(41189684-41189823)
[»] scaffold1268 (1 HSPs)
scaffold1268 (176-332)||(849-1006)
[»] scaffold1267 (1 HSPs)
scaffold1267 (176-332)||(849-1006)
[»] scaffold0237 (1 HSPs)
scaffold0237 (196-301)||(4083-4189)
[»] scaffold0321 (1 HSPs)
scaffold0321 (204-314)||(10057-10168)
[»] scaffold0018 (1 HSPs)
scaffold0018 (176-330)||(152523-152678)
[»] scaffold0110 (1 HSPs)
scaffold0110 (176-314)||(8783-8922)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 5958010 - 5957853
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||||| |||||||||||||| || | ||| |||| || ||| ||||||||||||||| ||||| |||    
T  5958010 aaaatgttacataaacaccctttattctcatacacccttgtacacctcatgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcggg 5957911  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||| |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  5957910 atccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 5957853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 312
Target Start/End: Original strand, 42354508 - 42354645
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||||||||||||||  |||||| |||||| || | ||| |||| ||| |||||||||||||||||| || |||| |    
T  42354508 aaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttatgtgag 42354607  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtc 312  Q
    |||| | ||| ||||||||||||||||||| |||||||    
T  42354608 atccacatgaacacgtgtcagatttttataaggatgtc 42354645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 504061 - 504198
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| |||| | ||||  |||||||| ||||| ||||| ||| ||| |||||| ||||||||    
T  504061 tttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgcggggtccacgtgactacgtgtca 504160  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| |||||| | ||||||| |||||||    
T  504161 gatttttgtgtgggtgtcaaaaggtgtattgccaccta 504198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 34012236 - 34012373
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||||| |||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||||||| |||||| ||||||||    
T  34012236 tttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 34012335  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||||| | ||| ||||||   |||||||||||||||    
T  34012336 aatttttgtgtgggtgtcaaagggtgtattaccaccta 34012373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 40423864 - 40424020
Alignment:
Q  177 aaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggga 275  Q
    ||||| |||||| |||  |||||||| |||||||||| |||||||||||| |||| | ||| |||| || |||  |||||||||||||| ||||| |||     
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 40423963  T
Q  276 tcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||| | |||| ||||||||||||||| | ||||||||||   ||||||| |||||||    
T  40423964 tccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccaccta 40424020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 12831207 - 12831088
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  12831207 tttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 12831108  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  12831107 gatttttgtgtgggtgtcaa 12831088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 329
Target Start/End: Original strand, 23122537 - 23122671
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| || || ||| ||| |||||| ||||||||    
T  23122537 tttattctcatacacccttgtacaccccatgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtca 23122636  T
Q  295 gatttttatatggatgtcaagatgtgtattaccac 329  Q
    ||||||| | ||| |||||| | ||||||| ||||    
T  23122637 gatttttgtgtgggtgtcaaaaggtgtattgccac 23122671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 15197511 - 15197356
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  |||||||| |||||||||| ||||||||||||||||  | ||| | || || |||  |||||||||||||| ||||| ||| |    
T  15197511 aatgatacatagacactttttattcccatacacccttgtacacctcatgcatttggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 15197412  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  15197411 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 15197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 44507010 - 44507164
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||||||| ||||||||||||||| ||||||| ||||||||| | ||| |||| | ||||  ||||||||||| || ||||  ||| |    
T  44507010 aatgatacatagacatattt-attctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtatgcttgtacggggt 44507108  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||||| ||||||||||||||| | ||| ||| ||   |||||||||||||||    
T  44507109 ccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccaccta 44507164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 14548082 - 14547945
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  14548082 tttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 14547983  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  14547982 gatttttgtgtgggtgtcaaatggtgtattgccaccta 14547945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 37038659 - 37038502
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||   ||||||||| ||||||| |||||| || | ||| |||| || ||| |||| |||||||||| ||||| |||    
T  37038659 aaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcggg 37038560  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||| |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  37038559 atccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 37038502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 9122363 - 9122239
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| ||||  ||||||| ||||||| || ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| |||||    
T  9122363 aatgatacatagacattctttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 9122264  T
Q  277 cctcgtgaccacgtgtcagattttt 301  Q
    || |||||| || ||||||||||||    
T  9122263 ccacgtgactacatgtcagattttt 9122239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 8841352 - 8841491
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||||||||||| || ||||||| |||||| || | | | |||| || ||| ||||||||||||||| ||||| |||    
T  8841352 aaaatgttacatagacaccatttattctcatacactcttgtacaccccatgcactaggaaaagagaagaggagaggaaagagaaagtgtgcttgtgcggg 8841451  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     ||| |||||| |||||| |||||||| | ||| ||||||    
T  8841452 gtccacgtgactacgtgttagatttttgtgtgggtgtcaa 8841491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 10284551 - 10284690
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||||||| ||||| ||| ||||||| |||||| || | ||| |||| | || | ||||||||||||||| ||||| |||    
T  10284551 aaaatgttacatagacaccttttattcttatacaaccttgtacaccccatgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgcggg 10284650  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     ||| |||||| |||||||| |||||| | ||| ||||||    
T  10284651 gtccacgtgactacgtgtcaaatttttgtgtgggtgtcaa 10284690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 43414501 - 43414640
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||  |||||||||| ||||||| ||| ||||| | ||| |||| || |||  |||||||||||||| ||||| |||    
T  43414501 aaaatgttacatagacaccctttattgccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 43414600  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    ||||  |||||||||||| |||||||| | ||| ||||||    
T  43414601 atccatgtgaccacgtgttagatttttgtgtgggtgtcaa 43414640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 1179880 - 1180017
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||| | ||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| || |||| | |||| ||||||||    
T  1179880 tttattcccatatatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgtca 1179979  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   |||||||||||||||    
T  1179980 gatttttgtgtgggtgtcaaagggtgtattaccaccta 1180017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 32032904 - 32032764
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| |||||||||||| |||| | ||| |||| || ||  ||||||||||||||  |||||  ||    
T  32032904 aaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaaggagaaagagaaagtgtacttgtgcagg 32032805  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaag 315  Q
    ||||   || |||| |||||||||||| | |||||||||||    
T  32032804 atccatatggccacatgtcagatttttgtgtggatgtcaag 32032764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 15258919 - 15258986
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtc 312  Q
    |||| |||||||||| |||| |||||  || ||| ||||||||| |||||||||||||| ||||||||    
T  15258919 gagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtc 15258986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 17443934 - 17443879
Alignment:
Q  246 agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||||||||||| |||||||||| ||| | |||| || ||||||||||||    
T  17443934 agatgaaagagaaagtgtctttgtgtggggtccacatgactacatgtcagattttt 17443879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 10621083 - 10621164
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||| ||||||   ||| | ||||||||||||||| | ||| ||||||   |||||||||||||||    
T  10621083 aaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccaccta 10621164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 16374744 - 16374884
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||| | ||||||  ||| ||||| | ||| |||||| |||||||||||||| ||||| ||||||| |    
T  16374744 aaaatgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaaaaagagatgaaagagaatgtgtgcttgtgtgag 16374843  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaag 315  Q
    |||| |||||||||||||||||||||| | |||||||||||    
T  16374844 atccacgtgaccacgtgtcagatttttgtgtggatgtcaag 16374884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 4999436 - 4999583
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||| ||||||||| | ||| |||| || |||| |||||||||||||||||||| ||| |    
T  4999436 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgcggggt 4999535  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtatt 324  Q
    || |||||| |||| |||||||||| | ||| |||||| | |||||||    
T  4999536 ccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtatt 4999583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 19436127 - 19436256
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaagagatga---aagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgt 292  Q
    |||||||||||||||||| ||||||| ||||||||| | |||  ||||||||| ||   ||||||||||||| || || ||||||| |||||| ||||||    
T  19436127 tttattctcatacacccttgtacaccccatgcattaggaaga--gaaaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtgactacgtgt 19436224  T
Q  293 cagatttttatatggatgtcaagatgtgtatt 324  Q
    ||||||||| | ||| |||||| | |||||||    
T  19436225 cagatttttgtgtgggtgtcaaaaggtgtatt 19436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 19330002 - 19329865
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||  ||||||||    
T  19330002 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtca 19329903  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| |||||| | ||||||| |||||||    
T  19329902 gatttttgtgtgggtgtcaaaaggtgtattgccaccta 19329865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 18207289 - 18207203
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||||||| ||||||| |||||||    
T  18207289 gagatgaaagagaaagtgtgcttgtgtggggttcacgtg-ccacgtgttagatttttgtatgggtgtcaagaggtgtattgccaccta 18207203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 332
Target Start/End: Original strand, 32564349 - 32564503
Alignment:
Q  179 atgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatc 277  Q
    |||||||||| |||||||||| |  |||||||||| |||||||||||| |||| | ||| |||| || ||| |||||||||||||| |||||| ||| ||    
T  32564349 atgttacatagacatattttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtatttgtgcggggtc 32564448  T
Q  278 ctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |   |  |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  32564449 catatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 32564503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 35523056 - 35522930
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| |||||||||| ||||||| ||| ||||| | ||| |||| ||||||  |||||||||||||| ||||| |||    
T  35523056 aaaatgttacataaacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggg 35522957  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
    ||||   || |||||||||||||||||    
T  35522956 atccatatggccacgtgtcagattttt 35522930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 3784155 - 3784018
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| ||||||  || ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||||||| |||||| ||||||||    
T  3784155 tttattcacatacattcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 3784056  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| |||||| |  |||||| |||||||    
T  3784055 gatttttgtgtgggtgtcaaaagatgtattgccaccta 3784018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 8080323 - 8080460
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| |||||| || | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  8080323 tttattcccatacacccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 8080422  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||||| | | ||||||   ||||||| |||||||    
T  8080423 gatttttatgtaggtgtcaaagggtgtattgccaccta 8080460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 35137689 - 35137556
Alignment:
Q  200 ttctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatt 298  Q
    |||||||||||||| ||||| | ||||||||| | ||| |||| || |||  |||||||||||||||||||| ||| ||| |||||| |||||| |||||    
T  35137689 ttctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatt 35137590  T
Q  299 tttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||| | ||| ||||||   ||||||| |||||||    
T  35137589 tttgtgtgggtgtcaaagggtgtattgccaccta 35137556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 40957866 - 40957761
Alignment:
Q  197 ttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcag 295  Q
    ||||| ||||||||||| ||||||| ||||||||| | ||| |||| | ||||  |||||||||||||| ||||  ||||||| |||||| |||||||||    
T  40957866 ttattttcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcag 40957767  T
Q  296 attttt 301  Q
    ||||||    
T  40957766 attttt 40957761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 41423862 - 41423709
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||| | ||||||| |||||| || | ||| |||| || |||||||||||||| | || ||||  |||    
T  41423862 aaaatgttacataaacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaatatgcttgtacggg 41423763  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattacca 328  Q
    |||  ||||||||| |||||||||||| | |   |||||||| |||||||||||    
T  41423762 atctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattacca 41423709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 2318161 - 2318322
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga---gatgaaagagaaagtgtgtttgtgtg 272  Q
    ||||||||||||| ||| | ||||||  |||||||| | ||||||  |||||||||  |||| ||| ||||   ||||||||||||||| || || |||     
T  2318161 aaaatgttacatagacacactttatttccatacacctttgtacactccatgcattagagagagagagaagatgagatgaaagagaaagtatgcttatgtc 2318260  T
Q  273 ggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccacctatg 334  Q
    || ||| |||||||||  ||||||||||| | ||| |||||||| |||| || |||||||||    
T  2318261 gggtccacgtgaccacacgtcagatttttgtgtgggtgtcaagaggtgtcttgccacctatg 2318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 7728088 - 7727929
Alignment:
Q  174 gaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtg 272  Q
    ||||||||||||||| |||  ||||| |  |||||| ||| ||||||| |||  |||| | ||| |||| ||| || |||| |||||||||  ||||| |    
T  7728088 gaaaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaacagaaagtgtacttgtgcg 7727989  T
Q  273 ggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||   ||||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  7727988 gggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccaccta 7727929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 32951434 - 32951549
Alignment:
Q  197 ttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcag 295  Q
    ||||||||||||||||| ||||||| |||| |||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| |||||| ||    
T  32951434 ttattctcatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttag 32951533  T
Q  296 atttttatatggatgt 311  Q
    |||||| | |||||||    
T  32951534 atttttgtgtggatgt 32951549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 36362130 - 36362049
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||||||| ||| |||||| ||||||||||||||| | ||| ||||||    ||||||||||||||    
T  36362130 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccaccta 36362049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 11044338 - 11044238
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||| ||||||||| | ||||||||||||||||| | ||| |||| | |||| ||||||||||||||  ||||| ||| ||| |||||| ||||||||    
T  11044338 tttattttcatacacctttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtacttgtgcggggtccacgtgactacgtgtca 11044239  T
Q  295 g 295  Q
    |    
T  11044238 g 11044238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 7389566 - 7389412
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| ||||  ||||||| ||||||||||| |||||| |||| |||| | ||| |||  || |||  |||||||||||||| ||||| ||| |    
T  7389566 aatgatacatagacatcctttattcccatacaccctg-tacaccccatgtattaggaagagagagtaggagagaaaagagaaagtgtgcttgtgcggggt 7389468  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  7389467 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccaccta 7389412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 36361909 - 36361972
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    |||||||||||||| ||||||||| ||| |||||| ||||||||||||||| | ||| ||||||    
T  36361909 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaa 36361972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 39255914 - 39256000
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||||||||  ||||||||  ||| |||| ||||||||||||||||| ||||| | |||||  ||||||| |||||||    
T  39255914 gagatgaaagagaaagtgttcttgtgtggagtccacgtg-ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccaccta 39256000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 38837369 - 38837271
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||| ||||| | ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| |||||||||||||||    
T  38837369 catacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagattttt 38837271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 3434666 - 3434585
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||| ||||||| |||||| ||||||||| ||||| | ||| ||||||   ||||||| |||||||    
T  3434666 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccaccta 3434585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 22343541 - 22343384
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| |||||||||||| |||| | ||| |||| || ||| ||||||||||||||  ||||| |||    
T  22343541 aaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 22343442  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   ||  ||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  22343441 gtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 22343384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 38267144 - 38267081
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    |||||||||||||| ||||| ||| ||| |||||| ||||||||||||||| | ||| ||||||    
T  38267144 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaa 38267081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 3694471 - 3694421
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||||||| ||||| ||||||| | |||| |||||||||||||||    
T  3694471 aaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagattttt 3694421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 31736038 - 31735940
Alignment:
Q  195 ttttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgt 292  Q
    |||||||| |||||||||| ||||||| ||| ||||| | ||| |||| || |||  |||||||||||||| ||||| |||||||  ||| ||||||||    
T  31736038 ttttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgt 31735940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 38044377 - 38044220
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||| |||| | ||| | || ||| || ||||||||||||||  ||||| |||    
T  38044377 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagaaaagagaagaagaaagagaaagtgtacttgtgcggg 38044278  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || | || |||||||||||| | |||||||||||  ||||||| |||||||    
T  38044277 gtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccaccta 38044220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 26296796 - 26296688
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||||| ||||||||||| ||||||| ||| |||| | ||||  ||||||||| || | ||||| ||| |||   || |||||| |||||||||||    
T  26296796 catacacccttgtacacctcatacattaagaagagagaagaggagagaaaagagaaaatgcgcttgtgcggggtccatatggccacgtatcagattttta 26296697  T
Q  303 tatggatgt 311  Q
    | |||||||    
T  26296696 tgtggatgt 26296688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 7465675 - 7465794
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||||||||||||| | ||| |||| ||||||| |||||||||||||| ||||||||| ||| |||||| ||||||||    
T  7465675 tttattcccatacacccttgtacacctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtca 7465774  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  7465775 gatttttgtgtgggtgtcaa 7465794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 19930742 - 19930897
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  |||||||| |||||||||| ||||||||||||||||| | ||| |||| || |||  |||||||||||||||||||| ||| |    
T  19930742 aatgatacatagacaccttttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 19930841  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || | |||| ||||||||||||||| | ||||||||||   ||||||| |||||||    
T  19930842 ccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccaccta 19930897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 332
Target Start/End: Original strand, 33436039 - 33436177
Alignment:
Q  195 ttttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtc 293  Q
    ||||||||||||||||||| ||||||||||||||||| | ||| |||| | |||| ||||||||||||||| ||||| ||| ||| |||||| ||||||     
T  33436039 ttttattctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtt 33436138  T
Q  294 agatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||| | ||| ||||||   ||||||| |||||||    
T  33436139 agatttttgtgtgggtgtcaaagggtgtattgccaccta 33436177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 28863615 - 28863478
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||||||||||||| | ||| |||| || |||| |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  28863615 tttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 28863516  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  28863515 gatttttgtgtgggtgtcaaagggtgtattgccaccta 28863478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 17473180 - 17473061
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||||||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||||||| |||||| ||||||||    
T  17473180 tttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 17473081  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  17473080 gatttttgtgtgggtgtcaa 17473061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 17819963 - 17820082
Alignment:
Q  215 gtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtca 313  Q
    ||||||||||||||||| | ||| |||| || |||||||||||||| |||||||||||||| ||| ||| ||||| |||||||||||| | ||| |||||    
T  17819963 gtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtca 17820062  T
Q  314 agatgtgtattaccacctat 333  Q
    ||  ||||||| ||||||||    
T  17820063 aggggtgtattgccacctat 17820082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 32505588 - 32505717
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||||| ||| |||| | ||||  ||| |||||||||| ||||| ||| ||| |||||| ||||||||    
T  32505588 tttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 32505687  T
Q  295 gatttttatatggatgtcaagatgtgtatt 324  Q
    ||||||| | ||| |||||| | |||||||    
T  32505688 gatttttgtgtgggtgtcaaaaggtgtatt 32505717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 10249322 - 10249451
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| | || || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  10249322 tttattctcatacacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 10249421  T
Q  295 gatttttatatggatgtcaagatgtgtatt 324  Q
    ||||||| | ||| |||||| | |||||||    
T  10249422 gatttttgtgtgggtgtcaaaaggtgtatt 10249451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 40613822 - 40613979
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| |||||||||| ||||||| ||| ||||| | |||||||| || |||  |||||||||||||| ||||| |||    
T  40613822 aaaatgttacatagacaccctttattcccatacacccttgtacaccccatacattatgaagaaagaataggagagaaaagagaaagtgtgcttgtgcggg 40613921  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||  ||| ||||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  40613922 gtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 40613979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 44152107 - 44152006
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  |||||||| |||||||||| ||| | ||||||||||| | ||| |||| || ||||||||||||||||||| |||||||||    
T  44152107 aaaatgttacataaacaccttttattcgcatacacccttgtatatctcatgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtggg 44152008  T
Q  275 at 276  Q
    ||    
T  44152007 at 44152006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 324
Target Start/End: Complemental strand, 4060863 - 4060716
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||| |||||||  |||||||||| ||||||| ||||||||| | ||| |||| | ||||  ||| |||||||||| || || |||||    
T  4060863 aatgatacataaacatcttttatttccatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaaaagaaagtgtgcttatgcgggat 4060764  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtatt 324  Q
    || ||| || ||||||||||||||| | |||||||||| | |||||||    
T  4060763 ccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtatt 4060716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 20700995 - 20700869
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| |||||||||| ||||||| |||||| || | ||| |||| || ||| ||||||||||||||| || || |||    
T  20700995 aaaatgttacatagacaccctttattcccatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcggg 20700896  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     ||| |||||| |||||||||||||||    
T  20700895 gtccacgtgactacgtgtcagattttt 20700869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 5574484 - 5574565
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||| ||||||   ||||||| |||||||    
T  5574484 aaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccaccta 5574565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 13438503 - 13438384
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  13438503 tttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 13438404  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  13438403 gatttttgtgtgggtgtcaa 13438384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 40701656 - 40701501
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  |||||||  |||||||||| |||||||  |||||||| | ||| |||| | ||||  |||||||||||||| ||||| ||| |    
T  40701656 aatgatacatagacaccttttatttccatacacccttgtacacccgatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 40701557  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || ||| || ||||||||||||||| | ||| |||||| | ||||||| |||||||    
T  40701556 ccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccaccta 40701501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 9058640 - 9058503
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| ||||||| || ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| | |||| ||||||||    
T  9058640 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtca 9058541  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  9058540 gatttttgtgtgggtgtcaaagggtgtattgccaccta 9058503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 2997408 - 2997564
Alignment:
Q  177 aaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggga 275  Q
    |||||||||||| |||  ||||| |  |||||||||| |||||||||||| |||| | ||| |||| || ||| ||||||||||||||  ||||| |||     
T  2997408 aaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 2997507  T
Q  276 tcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||   || |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  2997508 tccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 2997564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 3154253 - 3154197
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||||||||||||||| |||||||| | |||||||  |||||||||||||||||||||    
T  3154253 gagatgaaagagaaactgtgtttgggcgggatccatgtgaccacgtgtcagattttt 3154197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 332
Target Start/End: Complemental strand, 41758771 - 41758608
Alignment:
Q  172 aagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaa--gtgtgtttg 268  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| ||||||| |||  |||| | ||| |||| | ||||| |||||||||  ||| ||||     
T  41758771 aagaaaaatgttacatagacacattttattctcatacatccttgtacaccccatatattaggaagagagaagaggagataaaagagaaaatgtgcgttta 41758672  T
Q  269 tgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || | |||    ||| | ||||||||||||||||||| | |||||| | || ||||||||||||    
T  41758671 tgcgagatttatgtggctacgtgtcagatttttatataggtgtcaaaaggtatattaccaccta 41758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 42257344 - 42257234
Alignment:
Q  205 atacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttat 303  Q
    |||||| || ||||||| ||| ||||| | |||||||| || |||  |||||||||||||| ||||| ||| |||  ||| |||||||||||||||||||    
T  42257344 atacactcttgtacaccccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttat 42257245  T
Q  304 atggatgtcaa 314  Q
     ||| ||||||    
T  42257244 gtgggtgtcaa 42257234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 332
Target Start/End: Complemental strand, 30915615 - 30915486
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||||| ||||||| |||| |||| | ||| |||| | ||||  |||||||||||||| ||||  ||| ||| |||||| ||||||||||||||||    
T  30915615 catacacccttgtacaccccatgtattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagattttta 30915516  T
Q  303 tatggatgtcaagatgtgtattaccaccta 332  Q
    | |||  |||||   ||||||| |||||||    
T  30915515 tgtgggggtcaaagggtgtattgccaccta 30915486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 21301416 - 21301516
Alignment:
Q  172 aagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtg 270  Q
    ||||||||||||| ||| |||   ||||||  ||||||| |  |||||||||||||| || | |||||||| ||| ||| ||||||||||||||||||||    
T  21301416 aagaaaaatgttagatacacaccctttatttccatacactcatgtacacctcatgcactaggaagaaagaagagaagataaaagagaaagtgtgtttgtg 21301515  T
Q  271 t 271  Q
    |    
T  21301516 t 21301516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 3034903 - 3035029
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||| |||||||||||||| |||| | ||| |||| || ||| |||||||||||| |  ||||| |||    
T  3034903 aaaatgttacatagacaccttttaattgcatacaccttggtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcggg 3035002  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     |||   ||||||| ||||||||||||    
T  3035003 gtccatatgaccacatgtcagattttt 3035029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 36169016 - 36168890
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||||||||||| || ||||||| ||| ||||| | ||| |||| | ||||  ||||||||||| || ||||| |||    
T  36169016 aaaatgttacataaacaccctttattctcatacactcttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtatgcttgtgcggg 36168917  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     |||  ||| |||||||||| ||||||    
T  36168916 gtccatgtggccacgtgtcaaattttt 36168890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 27864809 - 27864745
Alignment:
Q  250 gaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    ||||||||||||||| || || ||| ||| |||||  ||||||||||||||| | ||||||||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaa 27864745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 38732534 - 38732394
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||| ||| ||||| |||||| |||| | ||| |||| ||| || ||||||||||||||  ||||| |||    
T  38732534 aaaatgttacatagacaccttttaattgcatacatccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 38732435  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaag 315  Q
     |||   ||||||| |||||||||||| | ||| |||||||    
T  38732434 gtccatatgaccacatgtcagatttttgtgtgggtgtcaag 38732394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 41575248 - 41575164
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgt-gggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattacca 328  Q
    |||||||||||||||||||| |||||| ||| ||| | ||||||| ||||| |||||| | || |||||||   |||||||||||    
T  41575248 gagatgaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattacca 41575164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 23186408 - 23186354
Alignment:
Q  119 tgttggcaattcaagaaataaagttggaagtagttcaaatgcttctgttagttaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23186408 tgttggcaattcaagaaataaagttggaagtagttcaaatgcttctgttagttaa 23186354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 9474816 - 9474953
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||| | ||||||||| | ||| |||| || |||  |||||||||||||||||||| ||| ||| |||||| ||||||||    
T  9474816 tttattctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtca 9474915  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  9474916 gatttttgtgtgggtgtcaaagggtgtattgccaccta 9474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 41758965 - 41758846
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||||||||| ||| |||  ||||| ||||||||    
T  41758965 tttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgactacgtgtca 41758866  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  41758865 gatttttgtgtggttgtcaa 41758846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 27564675 - 27564812
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||  ||||||||    
T  27564675 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtca 27564774  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| |||||| | ||||||| |||||||    
T  27564775 gatttttgtgtgggtgtcaaaaggtgtattgccaccta 27564812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 38632261 - 38632398
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| || |||  ||||| |||||||| ||||| ||| ||| |||||| ||||||||    
T  38632261 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtca 38632360  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||||||| || | ||||||| |||||||    
T  38632361 gatttttgtgtggatgttaaaaggtgtattgccaccta 38632398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 5958915 - 5959074
Alignment:
Q  171 taagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgt 269  Q
    |||| ||||||||||||| ||| |||||| |  |||||||||| ||||||| |||| |||| | ||| |||| ||| || ||||||||||||||  ||||    
T  5958915 taaggaaaatgttacatagacacattttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 5959014  T
Q  270 gtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccac 329  Q
    | ||| |||   ||||||| |||||||||||| | ||| |||||||| ||||||| ||||    
T  5959015 gcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccac 5959074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 32813427 - 32813301
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| |||||||||| ||||||| ||| ||||| | ||| |||| || |||  |||||||||||||| ||||| |||    
T  32813427 aaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 32813328  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     |||  |||||||||||||||||||||    
T  32813327 gtccatgtgaccacgtgtcagattttt 32813301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 50630618 - 50630512
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| |||||||  |||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  50630618 tttattctcatacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 50630519  T
Q  295 gattttt 301  Q
    |||||||    
T  50630518 gattttt 50630512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 2582075 - 2581938
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||| ||||||||| |||||||||||| |||| | ||| |||| || |||  ||| |||||||||| ||||| ||| ||| |||||| ||||||||    
T  2582075 tttattctaatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 2581976  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  2581975 gatttttgtgtgggtgtcaaagggtgtattgccaccta 2581938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 23186455 - 23186406
Alignment:
Q  18 gataaagatttgagtacattggaagttaggggacgaagaaggtggtgtgt 67  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23186455 gataaagatttgagtaaattggaagttaggggaagaagaaggtggtgtgt 23186406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 37649358 - 37649221
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| || |||  |||| ||||||||| ||||| || || | |||||||||||||||    
T  37649358 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagggaaagtgtgcttgtgcggaattcacgtgaccacgtgtca 37649259  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  37649258 gatttttgtgtgggtgtcaaagagtgtattgccaccta 37649221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 45044480 - 45044637
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    |||||||||| || ||||  |||||||||||||||||| ||||||| ||| ||||| | ||| |||| || |||  ||||||||| |||||||||| |||    
T  45044480 aaaatgttacgtagacatcatttattctcatacacccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaaatgtgtttgtgcggg 45044579  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||  ||| | || |||||||||||| ||||| ||||||   ||||||| |||||||    
T  45044580 gtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccaccta 45044637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 47452260 - 47452397
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| |||||| || | ||| |||| || |||  |||||||||||||| ||||| ||||||| |||||| |||||| |    
T  47452260 tttattcccatacatccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtta 47452359  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   |||||||||||||||    
T  47452360 gatttttgtgtgggtgtcaaagggtgtattaccaccta 47452397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 48716222 - 48716359
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaagagatgaaa-gagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| ||  | |||| || |||||||| ||||| ||| ||| |||||| ||||||||    
T  48716222 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgtca 48716321  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||||||||||   ||||||| |||||||    
T  48716322 gatttttgtgtggatgtcaaatggtgtattgccaccta 48716359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 51898603 - 51898760
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||   ||||||||| ||||||| |||||| || | ||| |||| || ||| |||| |||||||||| ||||| |||    
T  51898603 aaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcggg 51898702  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||| |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  51898703 atccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 51898760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 23597008 - 23597168
Alignment:
Q  173 agaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgt 271  Q
    |||||||||||||||| |||| ||||||||||||||| ||| | |||||||||| | || | | | |||| | ||||  ||||| ||||||||||||||     
T  23597008 agaaaaatgttacatagacattttttattctcatacatccttggacacctcatgaactaggaatagagaataggagagaaaagataaagtgtgtttgtgc 23597107  T
Q  272 gggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
      | ||  |||| ||||||||||||||||||| ||| | ||||   ||||||| |||||||    
T  23597108 aaggtcaacgtggccacgtgtcagatttttatgtgggtatcaaagagtgtattgccaccta 23597168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 8346327 - 8346465
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaag--gagaaagaaaagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtc 293  Q
    |||||||||||||||| | ||||||  ||||||||| |  |||||| | | ||||  |||||||||||||| |||||  || ||| |||||| |||||||    
T  8346327 tttattctcatacacctttgtacactccatgcattaggaagagaaaaagaggagagaaaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtc 8346426  T
Q  294 agatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||| | ||| ||||||   ||||||| |||||||    
T  8346427 agatttttgtgtgggtgtcaaatggtgtattgccaccta 8346465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 26274589 - 26274473
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcag 295  Q
    ||||||| |||||||||| || || ||||||||||| | ||| |||| |||||  ||||| |||||||  |||||  |||||| |||||| | |||||||    
T  26274589 tttattcccatacacccttgtgcatctcatgcattaggaagagagaagagaga--aaagaaaaagtgtacttgtgcaggatccacgtgactatgtgtcag 26274492  T
Q  296 atttttatatggatgtcaa 314  Q
    |||||| | ||||||||||    
T  26274491 atttttctgtggatgtcaa 26274473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 44454163 - 44454033
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtac----acctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtg 270  Q
    ||||||||||||| |||   |||||||| |||||||||  |||    ||| ||||||||| | ||| |||| | |||| |||||| |||||||| |||||    
T  44454163 aaaatgttacataaacaccatttattcttatacacccttatactctgaccccatgcattaggaagagagaagatgagaggaaagaaaaagtgtgcttgtg 44454064  T
Q  271 tgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||| ||| ||||| ||||||||||||    
T  44454063 tgggatccacgtaaccacatgtcagattttt 44454033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 47748622 - 47748466
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  ||||||| || ||||||| |||| |||| | ||| |||| ||| || |||||||||||| |  ||||| |||    
T  47748622 aaaatgttacatagacaccttttaattgcatacactcttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcggg 47748523  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||   || |||| |||||||||||||||||| |||||||  ||||||| |||||||    
T  47748522 atccatatggccacatgtcagatttttatatgggtgtcaag-ggtgtattgccaccta 47748466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 44548342 - 44548422
Alignment:
Q  222 tcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||| | ||| |||| ||||||  |||||||||||||| ||||| ||| ||| |||||| |||||||||||||||    
T  44548342 tcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagattttt 44548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 3000423 - 3000342
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||  ||| ||| |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  3000423 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 3000342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 37926378 - 37926515
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| ||| ||||| | ||| |||| ||| ||  |||||||||||||  ||||  |||||||  ||| ||||||||||    
T  37926378 tttattcacatacatccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtacttgtacgggatccatgtggccacgtgtca 37926477  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||||| ||| ||| || |  |||||| |||||||    
T  37926478 gatttttatgtgggtgttaaaagatgtattgccaccta 37926515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 38595258 - 38595177
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||  ||| ||| |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  38595258 aaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 38595177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 48489400 - 48489343
Alignment:
Q  255 agaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtc 312  Q
    ||||| |||| ||||| ||||||| ||||||||| |||||||||||| | ||||||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 49811445 - 49811542
Alignment:
Q  174 gaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtg 270  Q
    ||||||||||||||| |||   |||||||||||||||||| || |||| ||| ||||| | ||| |||| | ||||  |||||||||||||| |||||    
T  49811445 gaaaaatgttacatagacaccctttattctcatacacccttgtgcaccacatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtg 49811542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 50590948 - 50591077
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||||| ||||||| |||| |||| | ||| |||| ||| || ||||||||||||||  ||||| ||| |||   || |||| ||||||||||||     
T  50590948 catacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttg 50591047  T
Q  303 tatggatgtcaagatgtgtattaccaccta 332  Q
    | ||| |||||||  ||||||| |||||||    
T  50591048 tgtgggtgtcaaggggtgtattgccaccta 50591077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 31952950 - 31953107
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||| |||  |||||| |||||| || | ||| |||| ||| |||||||||||||||||||||||||| |    
T  31952950 aaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgtgtgag 31953049  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     ||| | ||| ||| |||||||||||||| ||| |||||||  ||||||| |||||||    
T  31953050 gtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccaccta 31953107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 11427778 - 11427659
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||||||| |||||| ||||||||    
T  11427778 tttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 11427679  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  11427678 gatttttgtgtgggtgtcaa 11427659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 17598732 - 17598577
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  |||||||  |||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| |    
T  17598732 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 17598633  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||||| ||||||||||||||| | ||| |||||| |  |||||| |||||||    
T  17598632 ccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccaccta 17598577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 31976428 - 31976302
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||||| ||||||| ||| ||||| | ||| |||| | ||||  |||||||||||||| ||||| |||    
T  31976428 aaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 31976329  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     | |  |||||||||||||||||||||    
T  31976328 gttcatgtgaccacgtgtcagattttt 31976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 28536405 - 28536563
Alignment:
Q  173 agaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgt 271  Q
    |||||||||||||||  ||||  |||||| ||||||||||| ||||||| |||||| || | |||  ||| || |||| |||||||||||||| ||||||    
T  28536405 agaaaaatgttacatcgacatcatttattttcatacacccttgtacaccccatgcagtaggaagagggaagagaagataaaagagaaagtgtgcttgtgt 28536504  T
Q  272 gggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||| ||| | ||||  |||||||||||||| | ||| |||||||   |||||| |||||||    
T  28536505 ggggtccacatgac--cgtgtcagatttttgtgtgggtgtcaagggttgtattgccaccta 28536563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 32869838 - 32869701
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  32869838 tttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 32869739  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  32869738 gatttttgtgtgggtgtcaaagggtgtattgccaccta 32869701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 23128066 - 23128186
Alignment:
Q  195 ttttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtc 293  Q
    |||||||  |||||||||| ||||| | ||||||||| | ||| | || || |||  |||||||||||||| ||||||||||||| |||||| |||||||    
T  23128066 ttttatttccatacacccttgtacatcccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtc 23128165  T
Q  294 agatttttatatggatgtcaa 314  Q
    |||||||| | ||| ||||||    
T  23128166 agatttttgtgtgggtgtcaa 23128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 22880580 - 22880735
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| ||||||||||   ||||||| |||||||||| ||||||| |||| |||| | ||| |||| || |||  |||||||||||||| ||||| ||| |    
T  22880580 aatgatacatatacaccatttattcccatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 22880679  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||||| |||||||||| |||| | ||| ||||||   ||||||| |||||||    
T  22880680 ccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccaccta 22880735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 29857987 - 29857881
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| ||| ||  |||||||||||||| || || ||||||| ||| || ||||||||    
T  29857987 tttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtaactacgtgtca 29857888  T
Q  295 gattttt 301  Q
    |||||||    
T  29857887 gattttt 29857881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 9379703 - 9379772
Alignment:
Q  246 agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaag 315  Q
    |||||||||||||| |||||||||||| ||||| | || |||||||||| |||||| ||||| |||||||    
T  9379703 agatgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaag 9379772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 4231728 - 4231571
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||| |||| | ||| |||| ||| || ||||||||||||||  ||||| |||    
T  4231728 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 4231629  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || ||||||||||||||||| | ||| || ||||  ||||||| |||||||    
T  4231628 gtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccaccta 4231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 12732592 - 12732523
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    ||||||||||||||| |||| || |||||||||| | |  ||||||||||||||||| | ||| ||||||    
T  12732592 gagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaa 12732523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 15989962 - 15990119
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||  |||| | ||| |||| ||| || ||||||||||||||  ||||| |||    
T  15989962 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 15990061  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  15990062 gtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 15990119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 30341280 - 30341437
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||  |||| | ||| |||| ||| || ||||||||||||||  ||||| |||    
T  30341280 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 30341379  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  30341380 gtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 30341437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 18520824 - 18520961
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||| ||||||||||| ||||||||||||||||| | ||| |||| || |||| |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  18520824 tttattttcatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 18520923  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  18520924 gatttttgtgtgggtgtcaaagggtgtattgccaccta 18520961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 35943810 - 35943951
Alignment:
Q  174 gaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtg 272  Q
    ||||||||||||||| ||| ||||||||  |||||||||| ||||||| |||||| || | ||| | || || ||| ||||||||||||||| |||||||    
T  35943810 gaaaaatgttacatagacacattttatttccatacacccttgtacaccccatgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtgtg 35943909  T
Q  273 ggatcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    |||||| ||| || ||||||||||||||| | ||| ||||||    
T  35943910 ggatccacgtaactacgtgtcagatttttgtgtgggtgtcaa 35943951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 334
Target Start/End: Original strand, 39557456 - 39557596
Alignment:
Q  195 ttttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtc 293  Q
    ||||||||||||| | ||  |||||||||||| |||| | ||| |||| || |||| |||||||||||||| |||| |||| |||  |||| ||||||||    
T  39557456 ttttattctcatagatccatgtacacctcatgtattaggaagagagaagaggagataaaagagaaagtgtgattgtatggggtccatgtgatcacgtgtc 39557555  T
Q  294 agatttttatatggatgtcaagatgtgtattaccacctatg 334  Q
    |||||||| | ||||||| |||| |||||||||||||||||    
T  39557556 agatttttgtgtggatgttaagaggtgtattaccacctatg 39557596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 6679878 - 6679721
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| ||||  |||||| ||||||||||| |||||||  || ||||| | ||| |||| || |||  ||||||||| |||||||||| |||    
T  6679878 aaaatgttacatagacatcatttattgtcatacacccttgtacaccctatacattaggaagagagaagaggagagaaaagagaaaatgtgtttgtgcggg 6679779  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||  ||||||||||||||||||||| | ||| |||||| | ||||||| |||||||    
T  6679778 gtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccaccta 6679721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 33149578 - 33149715
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||||| |||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||||||| |||||| ||||||||    
T  33149578 tttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 33149677  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||||| | ||| ||||||   |||||||||||||||    
T  33149678 aatttttgtgtgggtgtcaaagggtgtattaccaccta 33149715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 35785377 - 35785222
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  |||||||  |||||||||| ||||||| ||||||||| | ||| |||| | ||||  |||||||||||||| ||||| |||||    
T  35785377 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcgggat 35785278  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || ||| || ||||||||||||||| | ||| |||||| | ||||||| |||||||    
T  35785277 ccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccaccta 35785222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 26720696 - 26720570
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||||| ||| ||||| | ||| |||| ||| ||  |||||||||||||| ||||| |||    
T  26720696 aaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcggg 26720597  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
    ||||  ||| |||||||||||||||||    
T  26720596 atccatgtggccacgtgtcagattttt 26720570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 26990445 - 26990319
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||| ||| ||||  |||||||||||||||||| ||||||| ||| ||||| | ||| |||| ||| ||  |||||||||||||| ||||| |||    
T  26990445 aaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcggg 26990346  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
    ||||  ||| |||||||||||||||||    
T  26990345 atccatgtggccacgtgtcagattttt 26990319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 31009168 - 31009042
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||| | ||||||| |||||| || | ||| |||| ||| || |||| |||||||||| ||||| |||    
T  31009168 aaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgcggg 31009069  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
    |||| |||||| |||||||||||||||    
T  31009068 atccacgtgactacgtgtcagattttt 31009042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 14831974 - 14831837
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| ||||||||| | ||| |||| || |||  ||| |||||||||| ||||| ||||||| |||||| ||||||||    
T  14831974 tttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 14831875  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||||| ||| ||||||   ||||||| |||||||    
T  14831874 gatttttatgtgggtgtcaaagggtgtattgccaccta 14831837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 40145567 - 40145430
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||| ||||| ||||||||| ||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  40145567 tttattctcatatacccttgtacacctcgtgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 40145468  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||||||| ||   ||||||| |||||||    
T  40145467 gatttttgtgtggatgttaaagggtgtattgccaccta 40145430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 36732882 - 36733001
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||||||||||||| | ||| |||| | ||||  |||||||||||||| ||||| ||| ||| |||||| | ||||||    
T  36732882 tttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtca 36732981  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  36732982 gatttttgtgtgggtgtcaa 36733001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 2740434 - 2740297
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||| | ||||||||| | ||| ||||  | |||  |||||||||||||| ||||| ||||||| |||||| ||||||||    
T  2740434 tttattcccatacacccttgtacatcccatgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtca 2740335  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  2740334 gatttttgtgtgggtgtcaaagggtgtattgccaccta 2740297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 28177879 - 28177798
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  28177879 aaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 28177798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 33825264 - 33825401
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||| |||  |||||| |||||| || | ||| |||| ||| ||| |||||||||||||| ||||||  | | | | ||| |||||||||    
T  33825264 tttattctcatacagccttctacaccccatgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtgtaaggttcacatgaacacgtgtca 33825363  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||||| ||| |||||||  ||||||| |||||||    
T  33825364 gatttttatgtgggtgtcaaggagtgtattgccaccta 33825401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 2177544 - 2177436
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||| | ||| |||||||||||||||||||| ||||| |  ||||| || | ||| |||| | |||| |||||||||| |||| |||||||||    
T  2177544 aaaatgttacagagacacattttattctcatacacccttgtacatccaatgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgtggg 2177445  T
Q  275 atcctcgtg 283  Q
    |||| ||||    
T  2177444 atccacgtg 2177436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 21370184 - 21370058
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||| ||||||||| | ||||| || ||  | || | |||||||| | |||| |||||||||| |||||||||| |||    
T  21370184 aaaatgttacataaacaccctttattttcatacacctttgtacatcttatatactaggaagaaagaagatgagaggaaagagaaaatgtgtttgtgcggg 21370085  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     ||| ||||||||| ||||||||||||    
T  21370084 gtccacgtgaccacatgtcagattttt 21370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 25831392 - 25831339
Alignment:
Q  248 atgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||||| |||||||||||||| ||| | ||||||||||| ||||||||    
T  25831392 atgaaagagaaaatgtgtttgtgtggggtccacatgaccacgtgttagattttt 25831339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 9603998 - 9603867
Alignment:
Q  171 taagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgt 269  Q
    |||| |||||||||| || |||   |||||||||||||||| | ||||| | || ||| |||| ||| |||| | || ||||||||||||||||| ||||    
T  9603998 taagtaaaatgttacgtagacaccatttattctcatacacctttgtacatcccaagcactaagaagagagaagacgaaatgaaagagaaagtgtgattgt 9603899  T
Q  270 gtgggatcctcgtgaccacgtgtcagattttt 301  Q
     |||| |||   |||||| |||||||||||||    
T  9603898 atggggtccatatgaccatgtgtcagattttt 9603867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 13811812 - 13811693
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||| | ||||||||| | ||| |||| || |||   ||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  13811812 tttattcccatacatccttgtacatcccatgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 13811713  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  13811712 gatttttgtgtgggtgtcaa 13811693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 15409530 - 15409669
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| |||||||||| ||||||| ||| ||||| | ||| |||| | ||||  ||||||| |||||| ||||| |||    
T  15409530 aaaatgttacataaacaccctttattcgcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagagagtgtgcttgtgcggg 15409629  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     |||  ||| | ||||||||||||||| | ||| ||||||    
T  15409630 gtccatgtggctacgtgtcagatttttgtgtgggtgtcaa 15409669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 332
Target Start/End: Original strand, 3921180 - 3921342
Alignment:
Q  171 taagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgt 269  Q
    |||| ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||  |||| | ||| |||| ||| || ||||||||||||||  ||||    
T  3921180 taaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgt 3921279  T
Q  270 gtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    | ||| |||   || |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  3921280 gcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 3921342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 2252088 - 2252245
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||  |||| | ||| |||| ||| || ||||||||||||||  ||||| |||    
T  2252088 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 2252187  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  2252188 gtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 2252245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 11511410 - 11511539
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||||| ||||||||||||||||||| ||| |||| ||| ||  |||||||||||||| ||||| ||| ||| |||||| ||||||||||||||||    
T  11511410 catacacccttgtacacctcatgcattaagaagagagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagattttta 11511509  T
Q  303 tatggatgtcaagatgtgtattaccaccta 332  Q
    | ||| ||||||   ||||||| |||||||    
T  11511510 tgtgggtgtcaaagggtgtattgccaccta 11511539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 41236507 - 41236370
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  41236507 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 41236408  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | |||||||||| | ||||||| |||||||    
T  41236407 gatttttgtgtggatgtcaaaaggtgtattgccaccta 41236370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 6034222 - 6034067
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| |||||    
T  6034222 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 6034123  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || |||||| || |||||||||||| | ||| ||||||   ||||||| |||||||    
T  6034122 ccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 6034067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 48182989 - 48183108
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    |||||||||||||||||| ||||||| ||||||||||| ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  48182989 tttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 48183088  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  48183089 gatttttgtgtgggtgtcaa 48183108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 41824062 - 41823936
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||| | ||||||||||||||||| | ||| |||| ||||||  |||||||||||||| ||||| |||    
T  41824062 aaaatgttacatagacaccatttattctcatacacctttgtacacctcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggg 41823963  T
Q  275 atcctcgtgaccacgtgtcagattttt 301  Q
     |||  ||||| |||||||||||||||    
T  41823962 gtccatgtgactacgtgtcagattttt 41823936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 29240066 - 29239909
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| ||||||| || ||||||| |||||| || | ||| |||| || ||| ||||||||||||||| |||||||||    
T  29240066 aaaatgttacatagacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgtggg 29239967  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     ||| |||||| |||||| |||||||| | ||||||||||   ||||||| |||||||    
T  29239966 gtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccaccta 29239909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 47104723 - 47104625
Alignment:
Q  177 aaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||| || |||  |||||||||| ||||  || ||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||||    
T  47104723 aaatgttacgtagacactttttattctcgtacattctagtacacctcatgcattaagaagagagaagaggagatgaaagagaaagtgtgtttgtgtggg 47104625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 334
Target Start/End: Complemental strand, 29978067 - 29977906
Alignment:
Q  174 gaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtg 272  Q
    ||||||||||||||| | || ||||||||  |||||| || ||||||| ||| |||||  |||| | || ||| |||||||||||||||||| |||||||    
T  29978067 gaaaaatgttacatagatatcttttattcctatacacacttgtacaccccatacattagtgagagaaaagagaagatgaaagagaaagtgtgcttgtgtg 29977968  T
Q  273 ggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccacctatg 334  Q
    || |||   |||| ||||||||||||||| | ||| ||| |||  ||||||| |||||||||    
T  29977967 gggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatg 29977906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 50052348 - 50052505
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| |||||||| | |||||||| ||||| || | ||| |||| || ||| ||||||||||||||| ||||| |||    
T  50052348 aaaatgttacatagacaccctttattcccatacacctttgtacaccttatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 50052447  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     ||| |||||| ||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  50052448 gtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 50052505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 23608413 - 23608276
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| ||||  ||||||| |||||| ||  ||||||||||||||||| | ||| |||| || |||| |||||||||||||| ||||||||  |    
T  23608413 aatgatacatagacatcctttattcccatacatccctgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgtggagt 23608314  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     | |||||| ||||||||||||||| | ||| ||||||    
T  23608313 tcacgtgactacgtgtcagatttttgtgtgggtgtcaa 23608276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 24995047 - 24995166
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||| | ||||||| ||||||||||| ||| |||| | ||||  ||||||||| |||| ||||| ||| ||| |||||| ||||||||    
T  24995047 tttattcccatacaccattgtacaccccatgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgcggggtccacgtgactacgtgtca 24995146  T
Q  295 gatttttatatggatgtcaa 314  Q
     |||||||| ||| ||||||    
T  24995147 aatttttatgtgggtgtcaa 24995166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 50526091 - 50526248
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||   ||||||||| ||||||| |||||| || | ||| |||| || ||| |||| |||||| ||| ||||| ||     
T  50526091 aaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagcgtgcttgtgcgga 50526190  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||| |||||||||||||||||||||| | ||| ||||||   ||||||| |||||||    
T  50526191 atccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 50526248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 50813812 - 50813969
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||| |||||| |||| | ||| |||| ||| || ||||||||||||||  ||||| |||    
T  50813812 aaaatgttacatagacaccttttaattgcatacacccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 50813911  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     | |   ||||||| |||||||||||| | ||| |||||||  |||||||||||||||    
T  50813912 gttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccaccta 50813969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 17983664 - 17983820
Alignment:
Q  177 aaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggga 275  Q
    |||||||||||| |||  ||||| |  |||||||||| |||||||||||| |||| | ||| |||| || ||| ||||||||||||||  ||||| |||     
T  17983664 aaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 17983763  T
Q  276 tcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||   || |||| |||||||||||| | ||| |||||||  ||||||| |||||||    
T  17983764 tccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccaccta 17983820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 29535488 - 29535448
Alignment:
Q  243 aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtg 283  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  29535488 aagagatgaaagagaaagtgtgtttgtgtgggatccacgtg 29535448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 3481759 - 3481677
Alignment:
Q  250 gaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||||||||||| ||||||||| ||| |||||| | ||||||||||||| | ||| ||||||   ||||||| |||||||    
T  3481759 gaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccaccta 3481677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 18768972 - 18769093
Alignment:
Q  180 tgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggatcc 278  Q
    ||||||||| ||||  ||||  |||||||| ||| ||||||| |||| |||| | ||| | |||| ||||||||||||||| ||||||||||||||||      
T  18768972 tgttacataaacatcatttaccctcatacatccttgtacacc-catgtattaggaagagaaaaaatgagatgaaagagaaaatgtgtttgtgtgggattt 18769070  T
Q  279 tcgtgaccacgtgtcagattttt 301  Q
     | ||||||| ||||||||||||    
T  18769071 acatgaccacatgtcagattttt 18769093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 301
Target Start/End: Original strand, 42044315 - 42044413
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||| ||||| | ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| |||||||||||||||    
T  42044315 catacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagattttt 42044413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 56300086 - 56300224
Alignment:
Q  177 aaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggga 275  Q
    ||||||||| || ||||  ||||||||||||||  || ||||| ||||| |||||   ||| |||| || ||| |||||||||||||||||||||  |||    
T  56300086 aaatgttacgtagacattctttattctcatacaatcttgtacatctcatacattagaaagagagaagaggagaggaaagagaaagtgtgtttgtgcagga 56300185  T
Q  276 tcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
    | |   ||||||| |||||||||||| | ||||||||||    
T  56300186 ttcatatgaccacatgtcagatttttgtgtggatgtcaa 56300224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 28480217 - 28480314
Alignment:
Q  205 atacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||||| ||| ||||| |||||||| || | ||| |||| || ||||||| ||||||||||||||||||||| ||| | |||| || ||||||||||||    
T  28480217 atacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagattttt 28480314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 28481092 - 28481189
Alignment:
Q  205 atacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||||| ||| ||||| |||||||| || | ||| |||| || ||||||| ||||||||||||||||||||| ||| | |||| || ||||||||||||    
T  28481092 atacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagattttt 28481189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 28481967 - 28482064
Alignment:
Q  205 atacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||||| ||| ||||| |||||||| || | ||| |||| || ||||||| ||||||||||||||||||||| ||| | |||| || ||||||||||||    
T  28481967 atacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagattttt 28482064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 332
Target Start/End: Complemental strand, 40574959 - 40574802
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||| ||| |||  ||||||||||||||||||| ||||||| |||  |||| | ||| |||| | ||||  |||||||||||||| ||||  |||    
T  40574959 aaaatgttagatagacaccttttattctcatacacccttgtacaccccatatattaggaagagagaagaggagagaaaagagaaagtgtgcttgttcggg 40574860  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||  ||  |  |||||||||||||| | ||| ||||||   |||||||||||||||    
T  40574859 atccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccaccta 40574802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 480395 - 480506
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||| | ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||  ||| ||| |||||| |||||||||||||||     
T  480395 catacacctttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttg 480494  T
Q  303 tatggatgtcaa 314  Q
    | ||| ||||||    
T  480495 tgtgggtgtcaa 480506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 48647716 - 48647795
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtatt 324  Q
    |||| |||||||||| |||| ||||| ||  ||| ||||||||||||| |||||||||| ||| ||| |||| |||||||    
T  48647716 gagaggaaagagaaattgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtatt 48647795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 29234241 - 29234291
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||||||| ||||| ||| ||| |||||| |||||||||||||||    
T  29234241 aaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagattttt 29234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 19670636 - 19670793
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||||| |||| |||| | ||| |||| || ||| ||||||||||||||  ||||| |||    
T  19670636 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 19670735  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || |||| |||||||||||| | ||  |||||||  ||||||| |||||||    
T  19670736 gtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccaccta 19670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 18769219 - 18769163
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||||||||||||||| ||| |||||||||| |   | ||||||||||||||||||||    
T  18769219 gagatgaaagagaaaatgtatttgtgtggggtttacatgaccacgtgtcagattttt 18769163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 9563159 - 9563040
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||| | ||||| ||||||||||| | ||| |||| || |||  | ||||||||||||||||||  |||||| |||||| ||||||||    
T  9563159 tttattcccatacacctttgtacaactcatgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgcaggatccacgtgactacgtgtca 9563060  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||||||||||||||||    
T  9563059 gatttttatatggatgtcaa 9563040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 332
Target Start/End: Original strand, 13897971 - 13898132
Alignment:
Q  172 aagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtg 270  Q
    ||||||||||||| ||| |||   |||||||||||||||  |  |||||| ||| || || ||||| |||| ||| |||||||||||||||||| |||||    
T  13897971 aagaaaaatgttagatagacaccatttattctcatacacttttctacaccccatacactagggagagagaagagaagatgaaagagaaagtgtgcttgtg 13898070  T
Q  271 tgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || | ||| | ||| |||||||||||||||||| ||| |||||||  ||||||| |||||||    
T  13898071 tgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccaccta 13898132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 14623759 - 14623916
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||| |||  ||||||||||||| ||   ||| |||| ||| |||||||||||||||||| ||||||| |    
T  14623759 aaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtgag 14623858  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     ||| | ||| ||| |||||||||||||| ||| |||||||  ||||||| |||||||    
T  14623859 gtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccaccta 14623916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 49607574 - 49607437
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| |||||| |||||||||| | ||| | || || |||  |||||||||||||| ||||||||||||| |||||| ||||||||    
T  49607574 tttattcccatacacccttgtacacgtcatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtca 49607475  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  49607474 gatttttgtgtgggtgtcaaagggtgtattgccaccta 49607437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 277
Target Start/End: Complemental strand, 43746523 - 43746417
Alignment:
Q  172 aagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtg 270  Q
    ||||||||||||||||| |||   ||| || ||||||||||| |||||||||||||| || | |||||||| | ||||||||||||||| ||||||||||    
T  43746523 aagaaaaatgttacataaacaccctttgttgtcatacacccttgtacacctcatgcactaggaagaaagaagaggagatgaaagagaaattgtgtttgtg 43746424  T
Q  271 tgggatc 277  Q
    || ||||    
T  43746423 tgagatc 43746417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 35536806 - 35536667
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||||||||||||||  |||||| |||||| || | ||| |||| ||| |||||||||| ||||||| ||||||  |    
T  35536806 aaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgtaag 35536707  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     ||| | ||||||||||||| |||||||| ||| ||||||    
T  35536706 gtccacatgaccacgtgtcacatttttatgtgggtgtcaa 35536667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 20764835 - 20764992
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||||| ||||||| ||| ||||| | ||| |||| | ||||  |||||||||||||| ||||  |||    
T  20764835 aaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggg 20764934  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||  ||| ||||||||||||||||| | ||| ||| ||   |||||||||||||||    
T  20764935 gtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccaccta 20764992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 33118798 - 33118910
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaa--aagagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    |||||||||| ||||||| |||||| || ||||| ||||  | |||| |||||||||||||||||| || ||||||| |||||| |||||||| ||||||    
T  33118798 catacacccttgtacaccccatgcactagggagagagaaggaggagaggaaagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaattttt 33118897  T
Q  302 atatggatgtcaa 314  Q
     | ||| ||||||    
T  33118898 gtgtgggtgtcaa 33118910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 35965702 - 35965810
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa---gagatgaaagagaaagtgtgtttgtgtg 272  Q
    ||||||||||||| |||  ||||||||||||||||||| |||||||||||| ||||||   ||||||||   |||| ||||||||||||||| |||||      
T  35965702 aaaatgttacatagacaccttttattctcatacacccttgtacacctcatgaattaag--aaaagaaaagaggagaggaaagagaaagtgtgcttgtgca 35965799  T
Q  273 ggatcctcgtg 283  Q
    |||||| ||||    
T  35965800 ggatccacgtg 35965810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 53982171 - 53982034
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||| ||| ||||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  53982171 tttattcccatacaaccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 53982072  T
Q  295 gatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||| | ||| ||||||   ||||||| |||||||    
T  53982071 gatttttgtgtgggtgtcaaagggtgtattgccaccta 53982034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 25407137 - 25407193
Alignment:
Q  245 gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||    
T  25407137 gagatgaaagagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttt 25407193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 8076573 - 8076434
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   |||||||||||||||  | ||||||| |||||| || | ||| |||| || ||| ||||||||||||||| ||||| |||    
T  8076573 aaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 8076474  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     ||| |||||| |||||| |||||||| | ||| ||||||    
T  8076473 gtccacgtgactacgtgttagatttttgtgtgggtgtcaa 8076434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 33644360 - 33644241
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| ||||||||||  |||||| ||||||||| | ||| |||| || |||  |||||||||||||| ||||| ||| ||| |||||| ||||||||    
T  33644360 tttattcccatacacccttatacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 33644261  T
Q  295 gatttttatatggatgtcaa 314  Q
    ||||||| | ||| ||||||    
T  33644260 gatttttgtgtgggtgtcaa 33644241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 54868817 - 54868972
Alignment:
Q  178 aatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggat 276  Q
    |||| |||||| |||  |||||||  |||||||||| |||||||  |||||||| | ||| |||| | ||||  |||||||||||||| ||||| ||| |    
T  54868817 aatgatacatagacaccttttatttccatacacccttgtacaccctatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 54868916  T
Q  277 cctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || ||| || ||||||||||||||| | ||| |||||| | ||||||| |||||||    
T  54868917 ccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccaccta 54868972  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 1758375 - 1758516
Alignment:
Q  172 aagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtg 270  Q
    ||||||||||||||||| |||   |||||||  ||||||| | ||||||| ||||||||| | ||| |||| || |||||||||||||| ||||||||||    
T  1758375 aagaaaaatgttacataaacactgtttattc--atacacctttgtacacc-catgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtg 1758471  T
Q  271 tgggatcctcgtgaccacgtgtcagatttttatatggatgtcaag 315  Q
    |||  ||| ||| ||||  |||||||||||| | ||| |||||||    
T  1758472 tggagtccacgtaaccatatgtcagatttttgtgtgggtgtcaag 1758516  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 17470509 - 17470428
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||| ||||||||| ||| |||||| ||||||||||||||| | ||| ||| || | ||||||| |||||||    
T  17470509 aaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccaccta 17470428  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 324
Target Start/End: Original strand, 24699875 - 24700023
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||| ||||||||||||||| | |  ||||||||||  | || | ||| |||| || ||| ||||||||||||||||||||   ||    
T  24699875 aaaatgttacatagacatcttttattctcatacatctta-tacacctcataaactaggaagagagaagaggagaggaaagagaaagtgtgtttgtacagg 24699973  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtatt 324  Q
     ||| |||| ||||||| ||||||||||| ||| |||||| | |||||||    
T  24699974 gtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtatt 24700023  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 26141450 - 26141578
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaag--gagaaagaaaag-agatgaaagagaaagtgtgtttgtgtg 272  Q
    ||||||||||||| |||   ||||||  ||||||| || ||||||| ||| ||||| |  ||||||||| || |||  |||||||||||||| |||||||    
T  26141450 aaaatgttacatagacaccctttatttccatacactcttgtacaccccatacattaggaagagaaagaagaggagagaaaagagaaagtgtgcttgtgtg 26141549  T
Q  273 ggatcctcgtgaccacgtgtcagattttt 301  Q
    || |||  |||||||||||||||||||||    
T  26141550 gggtccatgtgaccacgtgtcagattttt 26141578  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 36331249 - 36331406
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    |||||||||||||||||| ||||| |  |||||||||| ||||||| |||| |||| | ||| |||| || ||| ||||||||||||||  ||||| |||    
T  36331249 aaaatgttacatatacatcttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 36331348  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
     |||   || |||| |||||||||||| | ||| |||||||  ||| ||| |||||||    
T  36331349 gtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccaccta 36331406  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 51419273 - 51419406
Alignment:
Q  169 gttaagaaaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgttt 267  Q
    |||||| ||||||||||||| |||  |||||||  |||||||||| ||||||| ||| ||||| | ||| |||| | ||||  |||||||||||||| ||    
T  51419273 gttaaggaaaatgttacataaacaccttttatttccatacacccttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgctt 51419372  T
Q  268 gtgtgggatcctcgtgaccacgtgtcagattttt 301  Q
    ||| ||| ||   ||| |||||||||||||||||    
T  51419373 gtgcggggtctatgtggccacgtgtcagattttt 51419406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 30801653 - 30801752
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||||||||||||||||| ||||||| |||| | || | ||| |||| | |||| |||||||||| |||| |||||||||    
T  30801653 aaaatgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgtgtggg 30801752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 35093765 - 35093626
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaag-aaaagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    |||||||||| || ||||  |||||||||||||||| | ||||| |||||||| || | ||| || |||| ||||| ||||||||||||| |||| |||     
T  35093765 aaaatgttacctagacatcatttattctcatacacctttgtacatctcatgcactaggaagagagaaaaaaagatgcaagagaaagtgtgcttgtatgga 35093666  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     | | | ||||||| ||||||||||||   ||||||||||    
T  35093665 gttcacatgaccacatgtcagatttttgcgtggatgtcaa 35093626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 48587087 - 48587168
Alignment:
Q  251 aaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    |||||||||||||  ||||| ||||||| |||||| ||||||||||||||||| | | ||||||   ||||||| |||||||    
T  48587087 aaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccaccta 48587168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 332
Target Start/End: Complemental strand, 52629452 - 52629323
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaa-gagatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||||| ||||| | ||||||||| | ||| |||| | ||||  |||||||||||||| ||||  ||| ||| |||||| |||||||||||||||     
T  52629452 catacacccttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttg 52629353  T
Q  303 tatggatgtcaagatgtgtattaccaccta 332  Q
    | ||| ||||||   ||||||| |||||||    
T  52629352 tgtgggtgtcaaagggtgtattgccaccta 52629323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 27714888 - 27714968
Alignment:
Q  252 aagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    ||||||||||||| ||||| ||| ||| | |||| ||||||||||||||| | ||| ||||||   |||||||||||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccaccta 27714968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 8956942 - 8956803
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||||||||||||||  ||||||   |||| || | ||| |||| ||| |||||||||| ||||||| ||||||  |    
T  8956942 aaaatgttacatagacagcatttattctcatacacccttctacaccctgtgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgtaag 8956843  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     ||| | ||| ||||||||| |||||||| ||| ||||||    
T  8956842 gtccacatgaacacgtgtcacatttttatgtgggtgtcaa 8956803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 41189684 - 41189823
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||  ||||||| || ||||||  ||| ||||| | |||||||| || |||  |||||||||||||| ||||| |||    
T  41189684 aaaatgttacatagacaccctttatttccatacactcttgtacactccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggg 41189783  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     |||  ||| |||||||||| |||||||| ||| ||||||    
T  41189784 gtccatgtggccacgtgtcaaatttttatgtgggtgtcaa 41189823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 849 - 1006
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| ||||||| || ||||||| |||||| || | ||| |||| || ||| ||||||||||||||| ||||| |||    
T  849 aaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 948  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || | |||||| ||||||||| ||||| | ||||||| ||   ||||||| |||||||    
T  949 attcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccaccta 1006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 849 - 1006
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||   ||||||| ||||||| || ||||||| |||||| || | ||| |||| || ||| ||||||||||||||| ||||| |||    
T  849 aaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 948  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccaccta 332  Q
    || | |||||| ||||||||| ||||| | ||||||| ||   ||||||| |||||||    
T  949 attcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccaccta 1006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 4189 - 4083
Alignment:
Q  196 tttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtca 294  Q
    ||||||| |||||||||| ||||||| ||||||||| | ||| |||| ||| ||  |||||||||||||| || || ||||||| ||| || ||||||||    
T  4189 tttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtaactacgtgtca 4090  T
Q  295 gattttt 301  Q
    |||||||    
T  4089 gattttt 4083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 10057 - 10168
Alignment:
Q  204 catacaccctggtacacctcatgcattaaggagaaagaaaag-agatgaaagagaaagtgtgtttgtgtgggatcctcgtgaccacgtgtcagattttta 302  Q
    |||||||||| |||||||  |||||||| | ||| |||| || |||  |||||||||||||| ||||  | | ||| |||||| ||||||||||||||||    
T  10057 catacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagattttta 10156  T
Q  303 tatggatgtcaa 314  Q
    | ||||||||||    
T  10157 tgtggatgtcaa 10168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 152678 - 152523
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaaaaga-gatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||| |  |||||||||| ||||| | |||| ||||   ||| |||| ||| || |||||||||||||| |||||| |||    
T  152678 aaaatgttacatagacaccttttaattgcatacacccttgtacatcccatgtattagaaagagagaagagaagaagaaagagaaagtgtatttgtgcggg 152579  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaagatgtgtattaccacc 330  Q
    ||||   ||||||| |||||||||||| | ||| |||||||  ||||||| |||||    
T  152578 atccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacc 152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 8783 - 8922
Alignment:
Q  176 aaaatgttacatatacatattttattctcatacaccctggtacacctcatgcattaaggagaaagaa-aagagatgaaagagaaagtgtgtttgtgtggg 274  Q
    ||||||||||||| |||  ||||||||| ||||||||| ||||||| |||  |||| | ||| |||| | | || |||||||||| |||  |||||||||    
T  8783 aaaatgttacatagacaccttttattcttatacacccttgtacaccccatatattaggaagagagaagatgggaggaaagagaaaatgtacttgtgtggg 8882  T
Q  275 atcctcgtgaccacgtgtcagatttttatatggatgtcaa 314  Q
     ||| |||||| | |||||| |||||| | | ||||||||    
T  8883 gtccacgtgactatgtgtcaaatttttgtgtagatgtcaa 8922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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