View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_11 (Length: 309)

Name: NF17169_low_11
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_11
NF17169_low_11
[»] chr3 (10 HSPs)
chr3 (38-289)||(3712834-3713085)
chr3 (38-289)||(3701537-3701785)
chr3 (54-289)||(3705296-3705535)
chr3 (84-295)||(3719401-3719611)
chr3 (99-289)||(3707854-3708041)
chr3 (173-249)||(32775269-32775345)
chr3 (173-249)||(32814955-32815031)
chr3 (174-249)||(26807447-26807522)
chr3 (172-247)||(32772689-32772764)
chr3 (183-236)||(41845773-41845826)
[»] chr5 (4 HSPs)
chr5 (174-289)||(38327773-38327886)
chr5 (174-288)||(38322601-38322713)
chr5 (172-252)||(31965393-31965473)
chr5 (173-246)||(8219733-8219806)
[»] chr8 (8 HSPs)
chr8 (169-247)||(12483098-12483176)
chr8 (170-247)||(12670511-12670588)
chr8 (174-289)||(2105864-2105978)
chr8 (175-289)||(12289395-12289510)
chr8 (173-246)||(939435-939508)
chr8 (169-247)||(12482778-12482856)
chr8 (172-247)||(11949429-11949504)
chr8 (209-248)||(11949184-11949223)
[»] chr1 (5 HSPs)
chr1 (169-246)||(27981044-27981121)
chr1 (174-250)||(43849044-43849120)
chr1 (175-247)||(30953117-30953189)
chr1 (183-236)||(39755137-39755190)
chr1 (183-236)||(39760491-39760544)
[»] chr7 (2 HSPs)
chr7 (173-248)||(25796171-25796246)
chr7 (183-236)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (174-248)||(19185991-19186065)
chr4 (172-246)||(26741372-26741446)
chr4 (175-251)||(30161835-30161911)
chr4 (175-246)||(51386264-51386335)
[»] chr6 (1 HSPs)
chr6 (174-246)||(21882907-21882979)
[»] chr2 (4 HSPs)
chr2 (174-246)||(4767493-4767565)
chr2 (174-246)||(38551328-38551400)
chr2 (183-236)||(14428572-14428625)
chr2 (183-236)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 3712834 - 3713085
Alignment:
Q  38 ttcaattcagtgcatacctccaatttcgatatcaagaaatttggataattaagatttgagaagtttcctttgtcatattatcattgtagtctctagatat 137  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  3712834 ttcaattcagtgcatacctccaattttgatatcaagaaatttggataattaagatttgagaagtttcctttgtcatattatcattgtagtctatagatgt 3712933  T
Q  138 taaatatctaataacattttcatcaaatgagcaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccg 237  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3712934 taaatatctaataacattatcatcaaatgaacaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccg 3713033  T
Q  238 gctggtgcaattttgagggagctgtgatgaaaacatttgtggtgttcggtaa 289  Q
    |||||||||  || ||||||||| |||||| || || |||||||||||||||    
T  3713034 gctggtgcatattcgagggagctatgatgataatatctgtggtgttcggtaa 3713085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 3701537 - 3701785
Alignment:
Q  38 ttcaattcagtgcatacctccaatttcgatatcaagaaatttggataattaagatttgagaagtttcctttgtcatattatcattgtagtctctagatat 137  Q
    ||||| |||| |||| |||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  3701537 ttcaaatcagcgcattcctccaattttgatattaagaaatttggacagttaagatttgagaagtttcctttgtcatattatcattatagtatctagatgt 3701636  T
Q  138 taaatatctaataacattttcatcaaatgagcaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccg 237  Q
    ||||||||||| |||||||| |  |   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701637 taaatatctaacaacattttgaata---gaacaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccg 3701733  T
Q  238 gctggtgcaattttgagggagctgtgatgaaaacatttgtggtgttcggtaa 289  Q
    |||||||||| |||||||||||| |||||| || || |||||||||||||||    
T  3701734 gctggtgcaaatttgagggagctatgatgataatatctgtggtgttcggtaa 3701785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 54 - 289
Target Start/End: Original strand, 3705296 - 3705535
Alignment:
Q  54 cctccaatttcgatatcaagaaatttggataattaagatttgagaagtttcctttgtcatattatca----ttgtagtctctagatattaaatatctaat 149  Q
    |||||||||| || ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    ||||||||| |||||| ||||||| ||||    
T  3705296 cctccaattttgacatcaagaaatttggacaattaagattttagaagtttcctctgtcatattatcaatcattgtagtctgtagataataaatatgtaat 3705395  T
Q  150 aacattttcatcaaatgagcaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 249  Q
    |||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3705396 aacattatcatcaattgaataacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 3705495  T
Q  250 ttgagggagctgtgatgaaaacatttgtggtgttcggtaa 289  Q
    ||||||||||| |||||| || || |||| ||||||||||    
T  3705496 ttgagggagctatgatgataatatatgtgttgttcggtaa 3705535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 84 - 295
Target Start/End: Original strand, 3719401 - 3719611
Alignment:
Q  84 aattaagatttgagaagtttcctttgtcatattatcattgtagtctctagatattaaatatctaataacattttcatcaaatgagcaacaaagcaccagt 183  Q
    ||||||||||| |||||||| || ||||||| ||||||||||| |||||||| ||||| ||||||||| ||| |||  |||||  |||||||||||||||    
T  3719401 aattaagattttagaagttttctgtgtcatactatcattgtaggctctagatgttaaagatctaataatattgtca--aaatgtacaacaaagcaccagt 3719498  T
Q  184 ggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattttgagggagctgtgatgaaaacatttgtggtg-t 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||| ||| |    
T  3719499 ggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatttgcagggagctatgatgaaaacatttgttgtgtt 3719598  T
Q  283 tcggtaaacatca 295  Q
    |||||||||||||    
T  3719599 tcggtaaacatca 3719611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 3707854 - 3708041
Alignment:
Q  99 agtttcctttgtcatattatcattgtagtctctagatattaaatatctaataacattttcatcaaatgagcaacaaagcaccagtggtctagtggtagaa 198  Q
    ||||| ||||||||||||||||||| ||| ||||||| ||||| || |||||||||| |||  | |  | ||||||||||||||||||||||||||||||    
T  3707854 agttttctttgtcatattatcattgcagtgtctagatgttaaagatgtaataacattatcaatagaacaacaacaaagcaccagtggtctagtggtagaa 3707953  T
Q  199 tagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattttgagggagctgtgatgaaaacatttgtggtgttcggtaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||   || ||||||||||||| ||||||| |||| |||||    
T  3707954 tagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatatt---ggggctgtgatgaaaatatttgtgatgtttggtaa 3708041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 32775269 - 32775345
Alignment:
Q  173 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775269 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 32775345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 32814955 - 32815031
Alignment:
Q  173 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32814955 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 32815031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 26807522 - 26807447
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807522 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt 26807447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 32772689 - 32772764
Alignment:
Q  172 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 247  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||    
T  32772689 caaagcacaagtggtttaatggtagaatagtaccctgccacggtacagacttgggtttgattcctggctgctgcaa 32772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 41845826 - 41845773
Alignment:
Q  183 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 236  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  41845826 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 41845773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 38327773 - 38327886
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattttgagggagctgtgatgaaaacat 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |  ||||||||||||||| ||    
T  38327773 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcatttctta--gagctgtgatgaaaatat 38327870  T
Q  274 ttgtggtgttcggtaa 289  Q
    |||||||||| |||||    
T  38327871 ttgtggtgttgggtaa 38327886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 38322601 - 38322713
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattttgagggagctgtgatgaaaacat 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||| |     
T  38322601 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcatttctga--gagctgtgatgaaaatag 38322698  T
Q  274 ttgtggtgttcggta 288  Q
    |||||||||| ||||    
T  38322699 ttgtggtgttgggta 38322713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 31965473 - 31965393
Alignment:
Q  172 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattttg 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31965473 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaactttg 31965393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 8219733 - 8219806
Alignment:
Q  173 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219733 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 8219806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 12483176 - 12483098
Alignment:
Q  169 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12483176 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 12483098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 12670588 - 12670511
Alignment:
Q  170 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670588 aacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 12670511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 174 - 289
Target Start/End: Original strand, 2105864 - 2105978
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattttgagggagctgtgatgaaaacat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | || | | ||| ||||||||| ||    
T  2105864 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcacctgtg-gagggctatgatgaaaatat 2105962  T
Q  274 ttgtggtgttcggtaa 289  Q
    ||||| ||||||||||    
T  2105963 ttgtgatgttcggtaa 2105978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 12289395 - 12289510
Alignment:
Q  175 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatt-ttgagggagctgtgatgaaaacat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||  |||||| ||  |    
T  12289395 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattcgtgaaggagcaatgatgataatgt 12289494  T
Q  274 ttgtggtgttcggtaa 289  Q
    |||||||||| |||||    
T  12289495 ttgtggtgttgggtaa 12289510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 939508 - 939435
Alignment:
Q  173 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939508 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 939435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 12482856 - 12482778
Alignment:
Q  169 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  12482856 caacaaagcaccagtggtctagtggtagaatagtaccctgccatggtacagacccgggttcaattcctggctggtgcaa 12482778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 11949504 - 11949429
Alignment:
Q  172 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  11949504 caaagcaccagtggtctagtggtagaatagtaccctgccacgctacagacccgggttcaattcctggctggtgcaa 11949429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 11949223 - 11949184
Alignment:
Q  209 ccacggtacagacccgggttcgattcccggctggtgcaat 248  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  11949223 ccacggttcagacccgggttcaattcccggctggtgcaat 11949184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 27981044 - 27981121
Alignment:
Q  169 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27981044 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 27981121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 43849120 - 43849044
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattt 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849120 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaattt 43849044  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 30953189 - 30953117
Alignment:
Q  175 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953189 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 30953117  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 39755137 - 39755190
Alignment:
Q  183 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 236  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39755137 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39755190  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 39760491 - 39760544
Alignment:
Q  183 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 236  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39760491 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39760544  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 25796171 - 25796246
Alignment:
Q  173 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796171 aaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 25796246  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 45343134 - 45343081
Alignment:
Q  183 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 236  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  45343134 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 45343081  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 19185991 - 19186065
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19185991 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 19186065  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 26741446 - 26741372
Alignment:
Q  172 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741446 caaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 26741372  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 30161835 - 30161911
Alignment:
Q  175 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaatttt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30161835 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcattttt 30161911  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 51386335 - 51386264
Alignment:
Q  175 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386335 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 51386264  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 21882907 - 21882979
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882907 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 21882979  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 4767565 - 4767493
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767565 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 4767493  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 38551328 - 38551400
Alignment:
Q  174 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551328 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38551400  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 14428572 - 14428625
Alignment:
Q  183 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 236  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  14428572 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 14428625  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 34962092 - 34962145
Alignment:
Q  183 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 236  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  34962092 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 34962145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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