View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_12 (Length: 287)

Name: NF17169_low_12
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_12
NF17169_low_12
[»] chr4 (13 HSPs)
chr4 (5-246)||(54198937-54199179)
chr4 (32-83)||(10250535-10250586)
chr4 (32-85)||(5622456-5622509)
chr4 (32-84)||(37997255-37997307)
chr4 (32-83)||(23369352-23369403)
chr4 (32-83)||(23719573-23719624)
chr4 (32-83)||(39478435-39478486)
chr4 (32-83)||(50890093-50890144)
chr4 (32-82)||(2268527-2268577)
chr4 (37-83)||(27964987-27965033)
chr4 (48-85)||(39440482-39440519)
chr4 (39-83)||(37297049-37297093)
chr4 (32-83)||(42815404-42815456)
[»] chr3 (17 HSPs)
chr3 (4-83)||(50886398-50886477)
chr3 (14-83)||(23553588-23553660)
chr3 (32-85)||(26014810-26014863)
chr3 (39-86)||(6178452-6178499)
chr3 (48-83)||(37453199-37453234)
chr3 (32-83)||(46623907-46623958)
chr3 (32-83)||(52939653-52939704)
chr3 (32-82)||(42357100-42357150)
chr3 (32-82)||(47472330-47472380)
chr3 (32-84)||(14207277-14207330)
chr3 (32-84)||(14215025-14215078)
chr3 (32-85)||(37302544-37302597)
chr3 (56-84)||(25188509-25188537)
chr3 (39-83)||(27541529-27541573)
chr3 (32-83)||(36639101-36639153)
chr3 (32-80)||(41505494-41505542)
chr3 (32-83)||(45293048-45293100)
[»] chr2 (19 HSPs)
chr2 (4-80)||(36193712-36193792)
chr2 (14-83)||(37468259-37468329)
chr2 (37-83)||(41042254-41042300)
chr2 (54-86)||(40210110-40210142)
chr2 (48-84)||(44287476-44287512)
chr2 (32-79)||(4969552-4969599)
chr2 (32-83)||(6511251-6511302)
chr2 (48-83)||(9647144-9647179)
chr2 (32-83)||(9990691-9990742)
chr2 (32-83)||(18254229-18254280)
chr2 (56-95)||(18749407-18749446)
chr2 (32-83)||(27490750-27490801)
chr2 (32-84)||(15260306-15260359)
chr2 (48-84)||(3838916-3838952)
chr2 (32-83)||(7438568-7438620)
chr2 (32-80)||(8848715-8848763)
chr2 (48-84)||(9760016-9760052)
chr2 (32-84)||(22888841-22888893)
chr2 (32-83)||(43057064-43057116)
[»] scaffold0020 (1 HSPs)
scaffold0020 (32-83)||(165473-165524)
[»] chr7 (15 HSPs)
chr7 (32-83)||(17117174-17117225)
chr7 (27-83)||(28566067-28566122)
chr7 (32-83)||(13152593-13152644)
chr7 (32-83)||(30941386-30941437)
chr7 (48-83)||(43942649-43942684)
chr7 (48-83)||(47391350-47391385)
chr7 (37-83)||(44895597-44895643)
chr7 (48-84)||(22605358-22605395)
chr7 (56-97)||(23389637-23389678)
chr7 (37-85)||(2362662-2362710)
chr7 (37-77)||(7077648-7077688)
chr7 (56-84)||(29723972-29724000)
chr7 (32-84)||(38861095-38861147)
chr7 (32-84)||(38956636-38956688)
chr7 (51-83)||(40112993-40113025)
[»] chr8 (11 HSPs)
chr8 (37-87)||(4054311-4054361)
chr8 (37-85)||(7271850-7271898)
chr8 (32-84)||(27325757-27325809)
chr8 (32-83)||(36023084-36023136)
chr8 (39-84)||(22719439-22719484)
chr8 (39-84)||(31249551-31249596)
chr8 (56-85)||(45406028-45406057)
chr8 (32-83)||(33100488-33100540)
chr8 (54-86)||(42733607-42733639)
chr8 (48-84)||(42768206-42768242)
chr8 (48-84)||(43397780-43397816)
[»] chr6 (7 HSPs)
chr6 (32-86)||(25811858-25811912)
chr6 (32-85)||(34047385-34047438)
chr6 (32-84)||(8098615-8098667)
chr6 (32-83)||(14817932-14817983)
chr6 (48-83)||(20712067-20712102)
chr6 (32-83)||(22079583-22079634)
chr6 (48-83)||(32316964-32316999)
[»] chr1 (12 HSPs)
chr1 (32-86)||(37685328-37685382)
chr1 (32-86)||(37700136-37700190)
chr1 (32-85)||(35414609-35414662)
chr1 (32-72)||(29936756-29936796)
chr1 (37-84)||(3159375-3159422)
chr1 (32-83)||(8350216-8350267)
chr1 (32-83)||(50726268-50726319)
chr1 (37-83)||(2571635-2571681)
chr1 (32-81)||(33466066-33466116)
chr1 (57-86)||(52261336-52261365)
chr1 (32-95)||(13489650-13489714)
chr1 (39-83)||(15083077-15083121)
[»] chr5 (9 HSPs)
chr5 (32-85)||(1764222-1764275)
chr5 (37-85)||(5721842-5721890)
chr5 (37-85)||(28306157-28306205)
chr5 (37-83)||(1274358-1274404)
chr5 (56-86)||(40039287-40039317)
chr5 (14-83)||(1981890-1981963)
chr5 (33-84)||(16594396-16594448)
chr5 (39-83)||(18660759-18660803)
chr5 (32-80)||(19522023-19522071)
[»] scaffold0003 (1 HSPs)
scaffold0003 (32-83)||(366294-366345)
[»] scaffold0067 (1 HSPs)
scaffold0067 (32-82)||(35524-35574)
[»] scaffold0481 (1 HSPs)
scaffold0481 (32-85)||(1220-1273)
[»] scaffold0087 (1 HSPs)
scaffold0087 (56-85)||(24571-24600)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 54199179 - 54198937
Alignment:
Q  5 agagagaagaaagtacaattaaagtatgagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcattccaaatatacaaaagttt 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54199179 agagagaataaagtacaattaaagtatgagagagttgtcaccgaaattgttaaaaatagttgttcaaatattatttctcattccaaatatacaaaagttt 54199080  T
Q  105 gatgaactttactattcattatatccatcctcaatacagtgtatacaacacaatcaattaaaagtttaaaaaataaaataatttattcagtgtagaagag 204  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54199079 gatgaactttactattcattatatccatcctcaattcagtgtatacaacacaatcaattaaaagtttaaaaaataaaataatttattcagtgtagaagag 54198980  T
Q  205 tttgaaacaaatattttaat-tatatgtagatgtctaggtata 246  Q
    |||||||||||||||||||| || |||||||||||||| ||||    
T  54198979 tttgaaacaaatattttaatgtacatgtagatgtctagatata 54198937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 10250535 - 10250586
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  10250535 gagaaagttgtcacaaaagttgtaaaaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 5622509 - 5622456
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  5622509 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 5622456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 37997307 - 37997255
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  37997307 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 37997255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23369352 - 23369403
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  23369352 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 23369403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23719573 - 23719624
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||||||||||| | || ||||||||||| |||||| ||||||||||||||    
T  23719573 gagagagttgtcatcaaaattgttaaaaatggttgtttaaatatcatttctc 23719624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 39478486 - 39478435
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  39478486 gagaaagttgtcacaaaagttgtaaaaaatagttgttcatatatcatttctc 39478435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 50890093 - 50890144
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||||||||| |||||||||||||||    
T  50890093 gagaaagttgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctc 50890144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 2268527 - 2268577
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttct 82  Q
    |||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  2268527 gagaaagttgtcacaaaagttgttaaaaatggatgttcaaatatcatttct 2268577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 27965033 - 27964987
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||  |||| || ||||||||||||||||||||||||||||    
T  27965033 agttgtcacaaaagtcgtaaaaaatagttgttcaaatatcatttctc 27964987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 39440519 - 39440482
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  39440519 aagttgtaaaaaatggttgttcaaatatcatttctcat 39440482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 37297093 - 37297049
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||    
T  37297093 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37297049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 42815456 - 42815404
Alignment:
Q  32 gagagagttgtcaccgaagttgtta-aaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||||| ||||||||||| |||||||||||||||    
T  42815456 gagaaagttgtcacaaaagttgttacaaaatagttgtacaaatatcatttctc 42815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 50886477 - 50886398
Alignment:
Q  4 gagagagaagaaagtacaattaaagtatgagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  50886477 gagagagaataaagtataatgagagtatgagagagttgtcaccgaagttgttaaaaatgattgttcaaatatcatttctc 50886398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 23553588 - 23553660
Alignment:
Q  14 aaagtacaattaaagtatgagagag--ttgtcaccgaagttgttaaaaa-tagttgttcaaatatcatttctc 83  Q
    |||||||||| | ||||||||||||  |||||||  |||||||| |||| |||||||||||||||||||||||    
T  23553588 aaagtacaataagagtatgagagagagttgtcacaaaagttgtttaaaagtagttgttcaaatatcatttctc 23553660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 26014863 - 26014810
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  26014863 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 26014810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 6178452 - 6178499
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcatt 86  Q
    |||||||  ||||||| |||||||||||| ||||||||||||||||||    
T  6178452 ttgtcacaaaagttgtcaaaaatagttgtacaaatatcatttctcatt 6178499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 37453234 - 37453199
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||||||| |||||||||||||||||||||    
T  37453234 aagttgttaaaaatggttgttcaaatatcatttctc 37453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 46623958 - 46623907
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  46623958 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 46623907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 52939704 - 52939653
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  52939704 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 52939653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 42357100 - 42357150
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttct 82  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||    
T  42357100 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttct 42357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 47472380 - 47472330
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttct 82  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||    
T  47472380 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttct 47472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 14207277 - 14207330
Alignment:
Q  32 gagagagttgtcaccgaagttgtta-aaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||||| ||||| ||||||||||||||||||||||    
T  14207277 gagaaagttgtcacaaaagttgttacaaaatcgttgttcaaatatcatttctca 14207330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 14215025 - 14215078
Alignment:
Q  32 gagagagttgtcaccgaagttgtta-aaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||||| ||||| ||||||||||||||||||||||    
T  14215025 gagaaagttgtcacaaaagttgttacaaaatcgttgttcaaatatcatttctca 14215078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 37302597 - 37302544
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||| |||||||||  ||||||| |||||| |||||| ||||||||||||||||    
T  37302597 gagaaagttgtcacaaaagttgtaaaaaatggttgttaaaatatcatttctcat 37302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 25188509 - 25188537
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctca 84  Q
    |||||||||||||||||||||||||||||    
T  25188509 aaaaatagttgttcaaatatcatttctca 25188537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 27541529 - 27541573
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||    
T  27541529 ttgtcactaaagttgtaaaaaatggttgttcaaatatcatttctc 27541573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 36639153 - 36639101
Alignment:
Q  32 gagagagttgtcaccgaagttgt-taaaaatagttgttcaaatatcatttctc 83  Q
    ||||| ||||||||| || |||| ||||||| |||||||||||||||||||||    
T  36639153 gagagtgttgtcaccaaaattgtataaaaatggttgttcaaatatcatttctc 36639101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 41505542 - 41505494
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcattt 80  Q
    |||| |||||||||  ||||||| ||||||| |||||||||||||||||    
T  41505542 gagaaagttgtcacaaaagttgtaaaaaataattgttcaaatatcattt 41505494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 45293048 - 45293100
Alignment:
Q  32 gagagagttgtcaccgaagttgtt-aaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  45293048 gagaaagttgtcacaaaagttgtttaaaaatagttgtttaaatatcatttctc 45293100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 36193712 - 36193792
Alignment:
Q  4 gagagagaagaaagtacaattaaagtatgagagag----ttgtcaccgaagttgttaaaaatagttgttcaaatatcattt 80  Q
    ||||||||| ||||| |||| | ||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||    
T  36193712 gagagagaataaagtgcaatgagagtatgagagagaaagttgtcaccgaagttgttaaaaatggttgttcaaatatcattt 36193792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 37468259 - 37468329
Alignment:
Q  14 aaagtacaattaaagtatgagagagttgtcaccgaagttg-ttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||| | |||||||||||||||||||  |||||| ||||||||  || |||||||||||||||||    
T  37468259 aaagtacaatgagagtatgagagagttgtcacaaaagttgtttaaaaatgattcttcaaatatcatttctc 37468329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 41042300 - 41042254
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||  |||||||||||||| |||||||||||||||||||||    
T  41042300 agttgtcacaaaagttgttaaaaatggttgttcaaatatcatttctc 41042254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 40210110 - 40210142
Alignment:
Q  54 ttaaaaatagttgttcaaatatcatttctcatt 86  Q
    |||||||||||||||||||||||||||||||||    
T  40210110 ttaaaaatagttgttcaaatatcatttctcatt 40210142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 44287476 - 44287512
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    ||||||| |||||||||||||||||||||||||||||    
T  44287476 aagttgtaaaaaatagttgttcaaatatcatttctca 44287512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 4969552 - 4969599
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatt 79  Q
    ||||||||||||||| |||||||||||||| |||||  ||||||||||    
T  4969552 gagagagttgtcaccaaagttgttaaaaatggttgtcaaaatatcatt 4969599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 6511302 - 6511251
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  6511302 gagaaagttgtcactaaagttgtaaaaaatggttgttcaaatatcatttctc 6511251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 9647179 - 9647144
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||||| ||||||||||||||||||||||||||||    
T  9647179 aagttgtaaaaaatagttgttcaaatatcatttctc 9647144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 9990742 - 9990691
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||| |||||||||||||||||||||||    
T  9990742 gagaaagttgtcacaaaagttgtaaaaattagttgttcaaatatcatttctc 9990691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 18254229 - 18254280
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  18254229 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 18254280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 18749407 - 18749446
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctcattccaaatata 95  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  18749407 aaaaatggttgtacaaatatcatttctcattccaaatata 18749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 27490750 - 27490801
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  27490750 gagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 27490801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 15260359 - 15260306
Alignment:
Q  32 gagagagttgtcaccgaagttgt-taaaaatagttgttcaaatatcatttctca 84  Q
    ||||||||||||||  ||||||| ||||| | ||||||||||||||||||||||    
T  15260359 gagagagttgtcacaaaagttgtctaaaagtggttgttcaaatatcatttctca 15260306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 3838916 - 3838952
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  3838916 aagttgtaaaaaataattgttcaaatatcatttctca 3838952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 7438620 - 7438568
Alignment:
Q  32 gagagagttgtcaccgaagttgtt-aaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||||||   |||||||| |||||| |||||||||||||||||||||    
T  7438620 gagagagttgtcataaaagttgtttaaaaatggttgttcaaatatcatttctc 7438568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 8848715 - 8848763
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcattt 80  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||    
T  8848715 gagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcattt 8848763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 9760052 - 9760016
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  9760052 aagttgtaaaaaatggttgttcaaatatcatttctca 9760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 22888841 - 22888893
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  || |||| |||||| ||||||||||||||||||||||    
T  22888841 gagaaagttgtcacaaaaattgtcaaaaatggttgttcaaatatcatttctca 22888893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 43057116 - 43057064
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaa-tagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||||||||| | |||||||||||||||||||||    
T  43057116 gagaaagttgtcacaaaagttgttaaaaagtggttgttcaaatatcatttctc 43057064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 165524 - 165473
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||| ||||| |||||||||||||| |||||||||||||||||||||    
T  165524 gagaaagttatcaccaaagttgttaaaaatggttgttcaaatatcatttctc 165473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 17117174 - 17117225
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||||||||||||| |||||||||||||  |||||||||||| ||||||||    
T  17117174 gagagagttgtcaccaaagttgttaaaaagggttgttcaaataacatttctc 17117225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 28566067 - 28566122
Alignment:
Q  27 agtatgagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||| |||||||||||| | || ||||||||||||||| |||||||||||||||||    
T  28566067 agtattagagagttgtcatcaaa-ttgttaaaaatagttattcaaatatcatttctc 28566122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 13152644 - 13152593
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  13152644 gagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 13152593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 30941437 - 30941386
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  30941437 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 43942684 - 43942649
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43942684 aagttgtaaaaaatagttgttcaaatatcatttctc 43942649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 47391350 - 47391385
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||||||| |||||||||||||||||||||    
T  47391350 aagttgttaaaaatggttgttcaaatatcatttctc 47391385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 44895597 - 44895643
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  44895597 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 44895643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 22605395 - 22605358
Alignment:
Q  48 aagttgttaaaaat-agttgttcaaatatcatttctca 84  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22605395 aagttgttaaaaattagttgttcaaatatcatttctca 22605358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 23389637 - 23389678
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctcattccaaatataca 97  Q
    |||||||||||| ||||||||||||||| ||| |||||||||    
T  23389637 aaaaatagttgtacaaatatcatttctctttcaaaatataca 23389678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 2362710 - 2362662
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||||||||  ||||||| |||||| |||||||| ||||||||||||||    
T  2362710 agttgtcacaaaagttgtaaaaaatggttgttcatatatcatttctcat 2362662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 7077688 - 7077648
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatca 77  Q
    |||||||||  |||||||| |||||||||||||||||||||    
T  7077688 agttgtcacaaaagttgtttaaaatagttgttcaaatatca 7077648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 29723972 - 29724000
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctca 84  Q
    |||||||||||||||||||||||||||||    
T  29723972 aaaaatagttgttcaaatatcatttctca 29724000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 38861147 - 38861095
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||| ||||||  |||||||||||||||||||||    
T  38861147 gagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctca 38861095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 38956636 - 38956688
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||| |||||| |||||| |||||||||||||||    
T  38956636 gagaaagttgtcactaaagttgtaaaaaatggttgtttaaatatcatttctca 38956688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 40112993 - 40113025
Alignment:
Q  51 ttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| ||||||||||||||||||||||||||||    
T  40112993 ttgtaaaaaatagttgttcaaatatcatttctc 40113025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 4054311 - 4054361
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcattc 87  Q
    |||| |||| |||||||| |||||| |||||||||||||||||||||||||    
T  4054311 agttatcacagaagttgtaaaaaatggttgttcaaatatcatttctcattc 4054361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 7271898 - 7271850
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||||||||  ||||||||||||||  ||||||||||||||||||||||    
T  7271898 agttgtcacaaaagttgttaaaaattattgttcaaatatcatttctcat 7271850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 27325809 - 27325757
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  27325809 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 27325757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 36023136 - 36023084
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaa-tagttgttcaaatatcatttctc 83  Q
    ||||||||||||||| || |||||||||| || ||||||||||||||||||||    
T  36023136 gagagagttgtcaccaaaattgttaaaaaataattgttcaaatatcatttctc 36023084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 22719484 - 22719439
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||||||  ||||||| |||||| ||||||||||||||||||||||    
T  22719484 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 22719439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 31249551 - 31249596
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||||||  ||||||| |||||| ||||||||||||||||||||||    
T  31249551 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 31249596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 45406028 - 45406057
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctcat 85  Q
    ||||||||||||||||||||||||||||||    
T  45406028 aaaaatagttgttcaaatatcatttctcat 45406057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 33100488 - 33100540
Alignment:
Q  32 gagagagttgtcaccgaagttgtta-aaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||||| ||||| |||||||||||||||||||||    
T  33100488 gagaaagttgtcacaaaagttgttataaaatggttgttcaaatatcatttctc 33100540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 42733607 - 42733639
Alignment:
Q  54 ttaaaaatagttgttcaaatatcatttctcatt 86  Q
    |||||||| ||||||||||||||||||||||||    
T  42733607 ttaaaaatggttgttcaaatatcatttctcatt 42733639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 42768242 - 42768206
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  42768242 aagttgtaaaaaataattgttcaaatatcatttctca 42768206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 43397816 - 43397780
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  43397816 aagttgtaaaaaatggttgttcaaatatcatttctca 43397780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 25811858 - 25811912
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcatt 86  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||||||    
T  25811858 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 25811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 34047438 - 34047385
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  34047438 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 34047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 8098615 - 8098667
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  8098615 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 8098667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 14817983 - 14817932
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  || |||| ||||||||||||||||||||||||||||    
T  14817983 gagaaagttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctc 14817932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 20712102 - 20712067
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||||||||||||| |||||||||||||||    
T  20712102 aagttgttaaaaatagttgtacaaatatcatttctc 20712067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 22079583 - 22079634
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  22079583 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 22079634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 32316964 - 32316999
Alignment:
Q  48 aagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32316964 aagttgtaaaaaatagttgttcaaatatcatttctc 32316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 37685382 - 37685328
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcatt 86  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||||||    
T  37685382 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37685328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 37700136 - 37700190
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcatt 86  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||||||||    
T  37700136 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37700190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 35414609 - 35414662
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    ||||||||||||||| |||||||||||||| |||||  |||||||||| |||||    
T  35414609 gagagagttgtcaccaaagttgttaaaaatggttgtcaaaatatcattcctcat 35414662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 29936796 - 29936756
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaa 72  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  29936796 gagagagttgtcaccaaagttgttaaaaatggttgttcaaa 29936756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 3159422 - 3159375
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctca 84  Q
    |||||||||  ||||||| |||||| ||||||||||||||||||||||    
T  3159422 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 3159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 8350216 - 8350267
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  8350216 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 8350267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 50726268 - 50726319
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  ||||||| ||||||||||||| ||||||||||||||    
T  50726268 gagaaagttgtcactaaagttgtaaaaaatagttgttgaaatatcatttctc 50726319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 2571681 - 2571635
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  2571681 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 2571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 33466116 - 33466066
Alignment:
Q  32 gagagagttgtcaccgaagttgtt-aaaaatagttgttcaaatatcatttc 81  Q
    ||||| ||||||||  |||||||| ||||||||||||||||||||||||||    
T  33466116 gagagtgttgtcacataagttgtttaaaaatagttgttcaaatatcatttc 33466066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Complemental strand, 52261365 - 52261336
Alignment:
Q  57 aaaatagttgttcaaatatcatttctcatt 86  Q
    ||||||||||||||||||||||||||||||    
T  52261365 aaaatagttgttcaaatatcatttctcatt 52261336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 13489714 - 13489650
Alignment:
Q  32 gagagagttgtcaccgaagttgtta-aaaatagttgttcaaatatcatttctcattccaaatata 95  Q
    |||| |||||||||  ||||||| | ||||| | ||||||||||||||||||| |||||||||||    
T  13489714 gagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctccttccaaatata 13489650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 15083077 - 15083121
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||    
T  15083077 ttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 15083121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 1764275 - 1764222
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||| ||||||||| |||||||| ||||||  ||||||||||||||||||||||    
T  1764275 gagaaagttgtcacagaagttgtaaaaaatgattgttcaaatatcatttctcat 1764222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 5721842 - 5721890
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||||||||  || |||| ||||||||||||||||||||||||||||||    
T  5721842 agttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctcat 5721890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 28306157 - 28306205
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||    
T  28306157 agttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 28306205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 1274404 - 1274358
Alignment:
Q  37 agttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||    
T  1274404 agttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 1274358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Complemental strand, 40039317 - 40039287
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctcatt 86  Q
    |||||||||||||||||||||||||||||||    
T  40039317 aaaaatagttgttcaaatatcatttctcatt 40039287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 1981963 - 1981890
Alignment:
Q  14 aaagtacaattaaagtatgagagag----ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||||| | ||||||||||||    |||||||  ||||  |||||||| |||||||||||||||||||||    
T  1981963 aaagtacaatgagagtatgagagagaaagttgtcacaaaagtgtttaaaaatggttgttcaaatatcatttctc 1981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 16594396 - 16594448
Alignment:
Q  33 agagagttgtcaccgaagttgttaaaaa-tagttgttcaaatatcatttctca 84  Q
    |||||||||||||  ||||||||||||| | | ||||||||||||||||||||    
T  16594396 agagagttgtcacaaaagttgttaaaaaatggatgttcaaatatcatttctca 16594448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 18660803 - 18660759
Alignment:
Q  39 ttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||    
T  18660803 ttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 18660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 19522023 - 19522071
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcattt 80  Q
    |||| |||||||||  ||||||| |||||| ||||||||||||||||||    
T  19522023 gagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 19522071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 366345 - 366294
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctc 83  Q
    |||| |||||||||  |||||||||||||| ||||| |||||||||||||||    
T  366345 gagaaagttgtcacaaaagttgttaaaaatggttgtacaaatatcatttctc 366294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 35574 - 35524
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttct 82  Q
    ||||||||| ||||  ||||||| |||||| ||||||||||||||||||||    
T  35574 gagagagttatcacaaaagttgtaaaaaatggttgttcaaatatcatttct 35524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 1220 - 1273
Alignment:
Q  32 gagagagttgtcaccgaagttgttaaaaatagttgttcaaatatcatttctcat 85  Q
    |||||| |||||| | |||||||||||| | |||||| ||||||||||||||||    
T  1220 gagagaattgtcatcaaagttgttaaaagtggttgtttaaatatcatttctcat 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 24571 - 24600
Alignment:
Q  56 aaaaatagttgttcaaatatcatttctcat 85  Q
    ||||||||||||||||||||||||||||||    
T  24571 aaaaatagttgttcaaatatcatttctcat 24600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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