View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_14 (Length: 281)

Name: NF17169_low_14
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_14
NF17169_low_14
[»] chr6 (6 HSPs)
chr6 (4-281)||(12784389-12784666)
chr6 (3-269)||(12780218-12780484)
chr6 (96-139)||(12785933-12785976)
chr6 (95-139)||(12781742-12781786)
chr6 (152-184)||(12781819-12781851)
chr6 (152-184)||(12786009-12786041)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 281
Target Start/End: Original strand, 12784389 - 12784666
Alignment:
Q  4 gggtagataattcttgtgtttgtttctctttatatttataatttcttcaacaatcttttgaatcgcttcgtattctgacctgcaaatttaaatttagaac 103  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12784389 gggtaaatacttcttgtgtttgtttctttttatatttataatttcttcaacgatcttttgaatcgcttcgtattctgacctgcaaatttaaatttagaac 12784488  T
Q  104 agttaaccaacaacaccaaatcatcacataccaaaagaaaaagagagttttctttcttttgattaattaaaatagtttgtcaaacattttagtaattaat 203  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||     
T  12784489 agttaaccaacaacaccaaatcatcacatacctaaagaaaaagagagttttctttctttcgattaattaaaatagtttgtgaaacattttagtaattaac 12784588  T
Q  204 taaactagaataaccgcgttgcgcggatgagattgttttattttacaagctaaattatatttcctcattgtatttttg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12784589 taaactagaataaccgcgttgcgcggatgagattgttttattttacaagctaaattatatttcctcattgtatttttg 12784666  T

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Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 269
Target Start/End: Original strand, 12780218 - 12780484
Alignment:
Q  3 tgggtagataattcttgtgtttgtttctctttatatttataatttcttcaacaatcttttgaatcgcttcgtattctgacctgcaaatttaaatttagaa 102  Q
    |||||| ||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||| |||||| ||||||    
T  12780218 tgggtaaatacttattgtgtttgtttctctttatatttataatctcttcaacgatcttttgaatcgcttcgtattgtgacatgcaagtttaaacttagaa 12780317  T
Q  103 cagttaaccaacaacaccaaatcatcacataccaaaagaaaaagagagttttctttcttttgattaattaaaatagtttgtcaaacattttagtaattaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12780318 cagttaaccaacaacaccaaatcatcacataccaaaagaaaaagagagttttctttcttttgattaattaaaatagtttgtcaaacattttactaattaa 12780417  T
Q  203 ttaaactagaataaccgcgttgcgcggatgagattgttttattttacaagctaaattatatttcctc 269  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  12780418 ttaaactaaaataaccgcgttgcgcggatgagattgttttattttacaagctaaattaattttcctc 12780484  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 12785933 - 12785976
Alignment:
Q  96 tttagaacagttaaccaacaacaccaaatcatcacataccaaaa 139  Q
    |||| |||| |||||||||||||| |||||||||||||||||||    
T  12785933 tttaaaacaattaaccaacaacacaaaatcatcacataccaaaa 12785976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 12781742 - 12781786
Alignment:
Q  95 atttagaacagttaaccaacaacaccaaatcatcacataccaaaa 139  Q
    ||||| |||| ||||||| |||||| |||||||||||||||||||    
T  12781742 atttataacaattaaccatcaacacgaaatcatcacataccaaaa 12781786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 12781819 - 12781851
Alignment:
Q  152 tttctttcttttgattaattaaaatagtttgtc 184  Q
    |||||| ||||||||||||||||||||||||||    
T  12781819 tttcttccttttgattaattaaaatagtttgtc 12781851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 12786009 - 12786041
Alignment:
Q  152 tttctttcttttgattaattaaaatagtttgtc 184  Q
    |||||| ||||||||||||||||||||||||||    
T  12786009 tttcttccttttgattaattaaaatagtttgtc 12786041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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