View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_15 (Length: 247)

Name: NF17169_low_15
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_15
NF17169_low_15
[»] chr3 (8 HSPs)
chr3 (17-227)||(46997196-46997406)
chr3 (39-227)||(46980144-46980332)
chr3 (46-227)||(46974162-46974343)
chr3 (39-227)||(46994958-46995146)
chr3 (109-227)||(47000951-47001069)
chr3 (133-223)||(46957991-46958081)
chr3 (150-223)||(46955155-46955228)
chr3 (108-227)||(46950785-46950904)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 46997196 - 46997406
Alignment:
Q  17 caaaggactacacaccgacgccgaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46997196 caaaggactacacaccgacgccgaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccct 46997295  T
Q  117 cctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46997296 cctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccat 46997395  T
Q  217 acatattaaac 227  Q
    |||||||||||    
T  46997396 acatattaaac 46997406  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 46980144 - 46980332
Alignment:
Q  39 gaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatg 138  Q
    |||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46980144 gaattcatgaactcttcatttgtttccagcaccatcattttcttaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatg 46980243  T
Q  139 aagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaac 227  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||    
T  46980244 aaattacttttccatcaaatttgttagcatatccacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaac 46980332  T

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Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 46974162 - 46974343
Alignment:
Q  46 tgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatgaagttac 145  Q
    ||||||||| ||||| ||||||  ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46974162 tgaactcttcatctgcttccagcgccatcattttctccggcgaaagacacacttcaagatcaatgcttcctcctccttcttgacctggatatgaagttac 46974261  T
Q  146 ttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaac 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  46974262 ttttccatcaaatttattagcatatccacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaac 46974343  T

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Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 46994958 - 46995146
Alignment:
Q  39 gaattcatgaactcttgatctgtttccagaaccatcattttctcaggtgaaagacacacttcaagatcaatgctccctcctccttcttgacctggatatg 138  Q
    |||||||||||||||| ||| ||||| || | | |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46994958 gaattcatgaactcttcatcggtttctagcaacgtcattttctccggcgaaagacacacttcaagatcaacgctccctcctccttcttgacctggatatg 46995057  T
Q  139 aagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaac 227  Q
    | ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  46995058 atgttacttttccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaac 46995146  T

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Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 47000951 - 47001069
Alignment:
Q  109 tgctccctcctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattc 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47000951 tgctccctcctcctttttgacctggatatgaagttacttttccatcaaatttgttagcatatcaacttctaactgccaatgcttttcccattccaaattc 47001050  T
Q  209 attcccatacatattaaac 227  Q
    |||||||||||||||||||    
T  47001051 attcccatacatattaaac 47001069  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 46957991 - 46958081
Alignment:
Q  133 gatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatatt 223  Q
    ||||||| | ||| || |||||||||||||| |||||||||||   ||||||||  ||||| |||||||||||||||||||||||||||||    
T  46957991 gatatgatgatacattaccatcaaatttgtttgcatatccactcagaactgccatcgctttacccattccaaattcattcccatacatatt 46958081  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 46955155 - 46955228
Alignment:
Q  150 ccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatatt 223  Q
    |||||||||||||| ||||||||||||  |||||| |  ||||||||||||||||||||||| |||||||||||    
T  46955155 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatatt 46955228  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 46950785 - 46950904
Alignment:
Q  108 atgctccctcctccttcttgacctggatatgaagttacttttccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaatt 207  Q
    ||||||||||||||||| || ||   |||||  || || || |||||| ||||||| ||||| |||||   |||||||| || |||||||||||||||||    
T  46950785 atgctccctcctccttcatgtccctcatatgctgtcacattcccatcacatttgtttgcataaccactcaaaactgccactggttttcccattccaaatt 46950884  T
Q  208 cattcccatacatattaaac 227  Q
    |||| |||||||||||||||    
T  46950885 catttccatacatattaaac 46950904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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