View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17169_low_17 (Length: 227)
Name: NF17169_low_17
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_low_17 |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 41527500 - 41527714
Alignment:
| Q |
7 |
agtcacctctcaagtatttcgactcggacagttttttctcatacatcatttctgactttttctacatctagggtatacaaaaattgaggaagatggtcta |
106 |
Q |
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| T |
41527500 |
agtcacctcccaagtatttggactcggacaatcttttctcatacatcatttctgactttttctacatctaggatatacaaaaattgaggaagatggtcta |
41527599 |
T |
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| Q |
107 |
taccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgttttctcttggt |
206 |
Q |
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| T |
41527600 |
taccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcattcagttatgatttgttttctcttggt |
41527699 |
T |
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| Q |
207 |
gttcccattaataaa |
221 |
Q |
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|||||| |||||||| |
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| T |
41527700 |
gttcccgttaataaa |
41527714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 39890148 - 39890025
Alignment:
| Q |
98 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
39890148 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactaataatgtcatcatacagttttgatttgttt |
39890049 |
T |
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| Q |
198 |
tctcttggtgttcccattaataaa |
221 |
Q |
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| T |
39890048 |
tctcttggtgttctcattaataaa |
39890025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 39882629 - 39882506
Alignment:
| Q |
98 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgttt |
197 |
Q |
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| T |
39882629 |
gatggtctgtaccactttatcatttctatgagtgctgcacaacacactactgttacatccctagttactaataatatcatcatacaattttgatttgttt |
39882530 |
T |
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| Q |
198 |
tctcttggtgttcccattaataaa |
221 |
Q |
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||| || ||||||| |||||||| |
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| T |
39882529 |
tcttttagtgttccggttaataaa |
39882506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 39897615 - 39897489
Alignment:
| Q |
98 |
gatggtctataccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttac---tattaatgtcatcatacagttatgatttg |
194 |
Q |
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| T |
39897615 |
gatggtctttaccacttcaccatttatatgaatgctgcaaaacacactaatgttatatcatttattacctgtaatagtgtaatcatacagttctggtttg |
39897516 |
T |
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| Q |
195 |
ttttctcttggtgttcccattaataaa |
221 |
Q |
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| T |
39897515 |
ttttctcttagcgtttccgttaataaa |
39897489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 39890215 - 39890168
Alignment:
| Q |
53 |
catttctgactttttctacatctagggtatacaaaaattgaggaagat |
100 |
Q |
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| T |
39890215 |
catttctgactttttctacatctaggatacaccaaaattgaggaagat |
39890168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1683 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 188 - 402
Alignment:
| Q |
7 |
agtcacctctcaagtatttcgactcggacagttttttctcatacatcatttctgactttttctacatctagggtatacaaaaattgaggaagatggtcta |
106 |
Q |
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||||||||| ||||||||| |||||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| |
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| T |
188 |
agtcacctcccaagtatttggactcggacaatcttatctcatacatcatttctgactttttctacatctaggatatacaaaaactaaggaagatggtcta |
287 |
T |
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| Q |
107 |
taccacttcaccatttctatgagtgctgcacaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgttttctcttggt |
206 |
Q |
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||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
288 |
taccacttccccatttctatgagtgttgcaaaacacactactgttacatcactagttactattaatgtcatcatacagttatgatttgatttctcttggt |
387 |
T |
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| Q |
207 |
gttcccattaataaa |
221 |
Q |
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|||||| |||||||| |
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| T |
388 |
gttcccgttaataaa |
402 |
T |
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