View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_2 (Length: 512)

Name: NF17169_low_2
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_2
NF17169_low_2
[»] chr2 (10 HSPs)
chr2 (217-496)||(35215081-35215364)
chr2 (211-327)||(35214609-35214725)
chr2 (14-158)||(14186198-14186342)
chr2 (211-300)||(3148218-3148307)
chr2 (217-290)||(4976449-4976522)
chr2 (217-290)||(4994356-4994429)
chr2 (194-260)||(16043382-16043447)
chr2 (217-256)||(6610021-6610061)
chr2 (217-256)||(15562018-15562058)
chr2 (217-253)||(43743821-43743857)
[»] chr4 (10 HSPs)
chr4 (211-488)||(50657435-50657717)
chr4 (211-327)||(50656982-50657098)
chr4 (230-323)||(38979219-38979312)
chr4 (211-261)||(5929216-5929266)
chr4 (220-290)||(10421525-10421595)
chr4 (186-255)||(16984326-16984395)
chr4 (194-235)||(52720605-52720646)
chr4 (217-260)||(3167451-3167495)
chr4 (217-289)||(6246815-6246887)
chr4 (217-289)||(53664243-53664315)
[»] chr1 (12 HSPs)
chr1 (14-159)||(42862359-42862504)
chr1 (211-313)||(46097418-46097519)
chr1 (186-233)||(41466213-41466260)
chr1 (185-232)||(45320455-45320502)
chr1 (217-290)||(31788220-31788293)
chr1 (182-235)||(41465232-41465285)
chr1 (217-290)||(7463446-7463519)
chr1 (211-261)||(46098188-46098238)
chr1 (217-290)||(11426884-11426957)
chr1 (217-290)||(14924705-14924778)
chr1 (217-290)||(14925286-14925359)
chr1 (192-233)||(35972601-35972642)
[»] chr3 (9 HSPs)
chr3 (228-296)||(51802491-51802559)
chr3 (186-255)||(37242973-37243042)
chr3 (211-266)||(42423195-42423250)
chr3 (185-255)||(34872964-34873034)
chr3 (186-255)||(1259685-1259754)
chr3 (194-232)||(44445498-44445536)
chr3 (217-290)||(38337421-38337494)
chr3 (194-228)||(1258673-1258707)
chr3 (194-228)||(34873693-34873727)
[»] chr5 (4 HSPs)
chr5 (194-235)||(3135931-3135972)
chr5 (217-281)||(472147-472212)
chr5 (194-258)||(38064150-38064214)
chr5 (217-256)||(8320905-8320945)
[»] scaffold0189 (2 HSPs)
scaffold0189 (217-290)||(12803-12876)
scaffold0189 (217-289)||(12215-12287)
[»] chr8 (4 HSPs)
chr8 (217-290)||(43924962-43925035)
chr8 (217-290)||(43972030-43972103)
chr8 (194-229)||(2320220-2320255)
chr8 (217-290)||(43924521-43924594)
[»] chr7 (7 HSPs)
chr7 (186-255)||(31235137-31235206)
chr7 (194-240)||(41236797-41236844)
chr7 (211-261)||(9124369-9124419)
chr7 (194-258)||(8466514-8466578)
chr7 (217-256)||(29006378-29006418)
chr7 (217-256)||(29007176-29007216)
chr7 (211-255)||(46251415-46251459)
[»] chr6 (1 HSPs)
chr6 (216-277)||(34034198-34034259)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 217 - 496
Target Start/End: Complemental strand, 35215364 - 35215081
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactcttctctttc 316  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35215364 ttcccaccataggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactattctctttc 35215265  T
Q  317 ctccatccccactcatc----agcagcaacacatctaatccaccttcccaaatctccttcttcccttcccaattgcatcttttgttcataagaaattgtg 412  Q
    |||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  35215264 ctccatccccactcatccaccaccagcaacacatctaatccaccttcccaaatctccttcttcccttcccaattgcatcttttgttcagaaaaaattgtg 35215165  T
Q  413 ttcatagatccaaaacaaaacacaaattctatttcaatctcatattcaatctaaacacaacaacaatattgtttcaaaatattc 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35215164 ttcatagatccaaaacaaaacacaaattctatttcaatctcatattcaatctaaacacaacaacaatactgtttcaaaatattc 35215081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 211 - 327
Target Start/End: Original strand, 35214609 - 35214725
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactcttc 310  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35214609 aaaatcttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacgctcaacacactatctctcaccactcttc 35214708  T
Q  311 tctttcctccatcccca 327  Q
    |||||||||||||||||    
T  35214709 tctttcctccatcccca 35214725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 14186198 - 14186342
Alignment:
Q  14 aggtacaatgagagaagataaagttggagtttagattttgtatcagtgaaccatgataaaattggatagctaccataatcaaaccgttgnnnnnnnttgg 113  Q
    ||||||||||| ||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||| |||||||||||||||||||       ||||    
T  14186198 aggtacaatgacagaagataaagttggagtttaaatttattatgagtgaaccatgataaaattggataggtaccataatcaaaccgttgaaaaaaattgg 14186297  T
Q  114 ttcatgatgaaccaatattttgatgggtctattctatatggaacc 158  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  14186298 ttcatgatgaaccaatattttgatgggtctattctatacggaacc 14186342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 3148218 - 3148307
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctc 300  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3148218 aaaatcttcccatcatggaaaagttgtttttaaccatcagattaaatgaagtacatagttttattatagacactcaacacactatctctc 3148307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 4976522 - 4976449
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||| |||||||||||  |||||||||| |||| ||||  || ||||| ||||| ||||||||||||||||    
T  4976522 ttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacac 4976449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 4994429 - 4994356
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||| |||||||||||  |||||||||| |||| ||||  || ||||| ||||| ||||||||||||||||    
T  4994429 ttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacac 4994356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 16043382 - 16043447
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaa 260  Q
    ||||||||||||| |||||| | |||||||||||| |||||| ||||| ||||| |||| |||||||    
T  16043382 ttcacatgggaaggtataaagctttcccaccatggaaaagtt-tttttgaccattagatcaaatgaa 16043447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 6610061 - 6610021
Alignment:
Q  217 ttcccaccatgggaaagtt-gtttttaaccatcagattaaa 256  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  6610061 ttcccaccatgggaaagttagtttttaaccattagattaaa 6610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 15562058 - 15562018
Alignment:
Q  217 ttcccaccatgggaaagtt-gtttttaaccatcagattaaa 256  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  15562058 ttcccaccatgggaaagttagtttttaaccattagattaaa 15562018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 43743857 - 43743821
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagatt 253  Q
    |||||||||||||||| || |||||||||||||||||    
T  43743857 ttcccaccatgggaaacttttttttaaccatcagatt 43743821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 211 - 488
Target Start/End: Complemental strand, 50657717 - 50657435
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgttttt-aaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactctt 309  Q
    |||| ||| ||||||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  50657717 aaaatctttccaccatggaaaagttattttttaatcatcagattaaatgaagtacataattttatcatagacactcaacacactatctctcatcactctt 50657618  T
Q  310 ctctttcctccatccccactcatc----agcagcaacacatctaatccaccttcccaaatctccttcttcccttcccaattgcatcttttgttcataaga 405  Q
    ||||||| ||||||||||||||||    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50657617 ctctttcatccatccccactcatccaccatctgcaacacatctaatccaccttcccaaatctccttcttcccttcccaattgcatcttttgttcagaaga 50657518  T
Q  406 aattgtgttcatagatccaaaacaaaacacaaattctatttcaatctcatattcaatctaaacacaacaacaatattgtttca 488  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50657517 aattgtgttcatagatccaaaacaaaatacaaattctatttcaatctcatattcaatctaaacacaacaacaatattgtttca 50657435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 211 - 327
Target Start/End: Original strand, 50656982 - 50657098
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactcttc 310  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50656982 aaaatcttcccaccatggaaaagttatttttaaccatcagattaaatgaagtacatagttttatcataaacactcaacacactatctctcaccactcttc 50657081  T
Q  311 tctttcctccatcccca 327  Q
    |||||||||||||||||    
T  50657082 tctttcctccatcccca 50657098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 38979219 - 38979312
Alignment:
Q  230 aaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactcttctctttcctccatc 323  Q
    ||||||||||| | |||| ||||||| ||||| |||||||||||| ||||||| |||| ||||||||||  |||| |||||||| |||||||||    
T  38979219 aaagttgttttaagccattagattaagtgaagaacatagttttattatagacattcaatacactatctcctaccattcttctctctcctccatc 38979312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 5929216 - 5929266
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaag 261  Q
    |||||||||||||||| |||||  ||||||||||||| ||||||| |||||    
T  5929216 aaaaccttcccaccataggaaaaatgtttttaaccattagattaattgaag 5929266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 10421595 - 10421525
Alignment:
Q  220 ccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    |||||||||||||| |  |||| ||| | |||||||||  || ||||| ||||||||||||||||||||||    
T  10421595 ccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacac 10421525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 16984326 - 16984395
Alignment:
Q  186 ggtggttgttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaa 255  Q
    ||||| || |||||||||||| ||| |||||||||| |||||||||| ||  ||||| |||| |||||||    
T  16984326 ggtggctgctcacatgggaaggtatgaaaccttccccccatgggaaaatttgttttagccattagattaa 16984395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 52720605 - 52720646
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaagtt 235  Q
    ||||||||||||| |||||||| |||||||||| ||||||||    
T  52720605 ttcacatgggaaggtataaaacattcccaccataggaaagtt 52720646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 3167495 - 3167451
Alignment:
Q  217 ttcccaccatgggaaagttgt-ttttaaccatcagattaaatgaa 260  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||    
T  3167495 ttcccaccatgggaaagttgttttttaaccatttgattaaatgaa 3167451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 6246815 - 6246887
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaaca 289  Q
    |||||||||||||||||||  |||| ||||| |||| |  |  || ||||| |||||||||||||||||||||    
T  6246815 ttcccaccatgggaaagttaattttgaccattagataaggtagagaacatacttttatcatagacactcaaca 6246887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 53664243 - 53664315
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaaca 289  Q
    ||||||||||||||||||   | || ||||| |||| ||||  || |||| ||||||||||||||||||||||    
T  53664243 ttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 42862504 - 42862359
Alignment:
Q  14 aggtacaatgagagaagataaagttggagtttagattttgtatcagtgaaccatgataaaattggatagctaccataatcaaaccgttgnnnnnnnttgg 113  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||       ||||    
T  42862504 aggtacaatgagagaagataaagttggagtttagatttagtatgagtgaaccatgataaaattggataggtaccataatcaaaccgttgaaaaaaattgg 42862405  T
Q  114 ttcatgatgaaccaatattttgatgggtctattctatatggaacca 159  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  42862404 ttcatgatgaaccaatattttgatgggtctattctatacggaacca 42862359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 46097418 - 46097519
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatctctcaccactcttc 310  Q
    ||||| |||||||||| ||||||||||||  | |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| | |||    
T  46097418 aaaactttcccaccataggaaagttgttta-agccattagattaaatgaagaacatagttttattatagacactcaacacactatctcttaccatttttc 46097516  T
Q  311 tct 313  Q
    |||    
T  46097517 tct 46097519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 41466213 - 41466260
Alignment:
Q  186 ggtggttgttcacatgggaagctataaaaccttcccaccatgggaaag 233  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  41466213 ggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaag 41466260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 45320455 - 45320502
Alignment:
Q  185 aggtggttgttcacatgggaagctataaaaccttcccaccatgggaaa 232  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  45320455 aggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaa 45320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 31788293 - 31788220
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    |||||||||||||||||||  |||||||||| |||| ||||  || ||||| ||||| ||||||||||||||||    
T  31788293 ttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacac 31788220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 41465232 - 41465285
Alignment:
Q  182 tttaggtggttgttcacatgggaagctataaaaccttcccaccatgggaaagtt 235  Q
    ||||||||| | ||||||||||||| | ||||||||||||||||||||||||||    
T  41465232 tttaggtggcttttcacatgggaaggtgtaaaaccttcccaccatgggaaagtt 41465285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 7463446 - 7463519
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||||||||| |  |||| ||||| ||||||||| ||| ||| |||||||||||||||  |||||||    
T  7463446 ttcccaccatgggaaagctaattttgaccattagattaaataaagaacacagttttatcatagaccatcaacac 7463519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 46098238 - 46098188
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaag 261  Q
    ||||||||||||||||||||||  || | |||||||| |||||||||||||    
T  46098238 aaaaccttcccaccatgggaaaagtgctattaaccattagattaaatgaag 46098188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 11426884 - 11426957
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||||||||| |  |||| ||||| ||||||| | ||| ||| |||||||||||||||  |||||||    
T  11426884 ttcccaccatgggaaagctaattttgaccattagattaactaaagaacacagttttatcatagaccatcaacac 11426957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 14924705 - 14924778
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||||||||| |  |||| ||| | | |||||||  || ||||| ||||||||||||||||||||||    
T  14924705 ttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacatatttttatcatagacactcaacac 14924778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 14925359 - 14925286
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||||||||| |  |||| ||||| |||| || |  || ||||| ||||||||||||||||||||||    
T  14925359 ttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacac 14925286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 35972642 - 35972601
Alignment:
Q  192 tgttcacatgggaagctataaaaccttcccaccatgggaaag 233  Q
    ||||||||||||||| |||||| | |||||||||||||||||    
T  35972642 tgttcacatgggaaggtataaagctttcccaccatgggaaag 35972601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 51802559 - 51802491
Alignment:
Q  228 ggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacacactatc 296  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  51802559 ggaaagttatttttaaccataagattaaatgaagtacatagttttatcacagacactcaacacactatc 51802491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 37243042 - 37242973
Alignment:
Q  186 ggtggttgttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaa 255  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||||| |||| |||||||    
T  37243042 ggtggttgttcacatgggaaggtataaaaccttcccaccatgggaaaatttgttttagccattagattaa 37242973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 42423250 - 42423195
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacat 266  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  42423250 aaaatcttcccaccatgggaaagttatttttaaccatcagattaaataaagtacat 42423195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 34872964 - 34873034
Alignment:
Q  185 aggtggttgttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaa 255  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||| ||  ||||| |||| |||||||    
T  34872964 aggtggctgttcacatgggaaggtataaaaccttcccaccatgggaaaatttgttttagccattagattaa 34873034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 1259754 - 1259685
Alignment:
Q  186 ggtggttgttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaa 255  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| ||  ||||| |||| |||||||    
T  1259754 ggtggttgttcacatgggaaggtataaaaccttcccaccatgagaaaatttgttttagccattagattaa 1259685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 44445498 - 44445536
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaa 232  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  44445498 ttcacatgggaagatataaaaccttcccaccatgggaaa 44445536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 38337494 - 38337421
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||||||||| |  |||| ||| | |||||||||  || ||||| ||||||||||||||||||||||    
T  38337494 ttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacac 38337421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 1258673 - 1258707
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgg 228  Q
    ||||||||||||| |||||||||||||||||||||    
T  1258673 ttcacatgggaaggtataaaaccttcccaccatgg 1258707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 34873727 - 34873693
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgg 228  Q
    ||||||||||||| |||||||||||||||||||||    
T  34873727 ttcacatgggaaggtataaaaccttcccaccatgg 34873693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 3135931 - 3135972
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaagtt 235  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  3135931 ttcacatgggaaggtataaaaccttcccaccatgggaaagtt 3135972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 472147 - 472212
Alignment:
Q  217 ttcccaccatgggaaagttgttttt-aaccatcagattaaatgaagtacatagttttatcatagac 281  Q
    |||||||||| |||||||||||||| ||||||||||||| |||| | |||||| ||||| ||||||    
T  472147 ttcccaccataggaaagttgtttttaaaccatcagattatatgatgaacatagctttatgatagac 472212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 38064150 - 38064214
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatg 258  Q
    |||||||||||||    ||||| |||||||||||||||||||  |||||||||| ||||||||||    
T  38064150 ttcacatgggaagggtgaaaactttcccaccatgggaaagttacttttaaccattagattaaatg 38064214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 8320905 - 8320945
Alignment:
Q  217 ttcccaccatgggaaagtt-gtttttaaccatcagattaaa 256  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  8320905 ttcccaccatgggaaagttagtttttaaccattagattaaa 8320945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 12876 - 12803
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    |||||||||||||||||||  |||| ||||| |||| || |  || ||||| ||||||||||||||||||||||    
T  12876 ttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacac 12803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 12215 - 12287
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaaca 289  Q
    ||||||||||| |||| ||  |||| ||| | |||||||||  || ||||| |||||||||||||||||||||    
T  12215 ttcccaccatgagaaaattaattttgaccgttagattaaatagagaacatatttttatcatagacactcaaca 12287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 43925035 - 43924962
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||| |||||||  |||| ||| | |||||||||  || ||||| ||||||||||||||||||||||    
T  43925035 ttcccaccatgagaaagttaattttgaccgttagattaaatagagaacatatttttatcatagacactcaacac 43924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 43972103 - 43972030
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||| |||||||||||  |||||||||| |||| ||||  || ||||| ||||| ||||||||||||||||    
T  43972103 ttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacac 43972030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 2320255 - 2320220
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatggg 229  Q
    ||||||||||||| ||||||||||||||||||||||    
T  2320255 ttcacatgggaaggtataaaaccttcccaccatggg 2320220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 43924521 - 43924594
Alignment:
Q  217 ttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcatagacactcaacac 290  Q
    ||||||||||||||||| |  |||| ||| | |||||||||  || ||||| |||||||||| |||||||||||    
T  43924521 ttcccaccatgggaaagctaattttgaccgttagattaaatagagaacatatttttatcataaacactcaacac 43924594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 31235206 - 31235137
Alignment:
Q  186 ggtggttgttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaa 255  Q
    ||||| ||||||||||||||| ||||||||||||||||||| | ||| ||  ||||| |||| |||||||    
T  31235206 ggtggctgttcacatgggaaggtataaaaccttcccaccatagaaaaatttgttttagccattagattaa 31235137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 41236797 - 41236844
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaa-gttgtttt 240  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  41236797 ttcacatgggaaggtgtaaaaccttcccaccatgggaaatgttgtttt 41236844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 9124419 - 9124369
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatgaag 261  Q
    ||||||||||||||||||||||  || |||||||||| ||||||| |||||    
T  9124419 aaaaccttcccaccatgggaaaaatgcttttaaccattagattaattgaag 9124369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 8466578 - 8466514
Alignment:
Q  194 ttcacatgggaagctataaaaccttcccaccatgggaaagttgtttttaaccatcagattaaatg 258  Q
    |||||||||||||    ||||| || ||||||||||||||||  |||||||||| ||||||||||    
T  8466578 ttcacatgggaagggtgaaaacttttccaccatgggaaagttacttttaaccattagattaaatg 8466514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 29006378 - 29006418
Alignment:
Q  217 ttcccaccatgggaaagtt-gtttttaaccatcagattaaa 256  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  29006378 ttcccaccatgggaaagttagtttttaaccattagattaaa 29006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 29007216 - 29007176
Alignment:
Q  217 ttcccaccatgggaaagtt-gtttttaaccatcagattaaa 256  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  29007216 ttcccaccatgggaaagttagtttttaaccattagattaaa 29007176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 46251415 - 46251459
Alignment:
Q  211 aaaaccttcccaccatgggaaagttgtttttaaccatcagattaa 255  Q
    ||||| |||||||||||||||||||| ||||| |||| |||||||    
T  46251415 aaaactttcccaccatgggaaagttgattttagccattagattaa 46251459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 34034198 - 34034259
Alignment:
Q  216 cttcccaccatgggaaagttgtttttaaccatcagattaaatgaagtacatagttttatcat 277  Q
    |||||||||||||||||||| |||| ||||||  ||| ||||  || |||||||||||||||    
T  34034198 cttcccaccatgggaaagttattttaaaccattggatcaaatagagaacatagttttatcat 34034259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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