View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_4 (Length: 466)

Name: NF17169_low_4
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_4
NF17169_low_4
[»] chr3 (2 HSPs)
chr3 (1-293)||(50580345-50580636)
chr3 (38-117)||(11462908-11462987)
[»] chr1 (1 HSPs)
chr1 (1-275)||(1059175-1059449)
[»] chr4 (1 HSPs)
chr4 (38-121)||(45058993-45059076)
[»] chr7 (1 HSPs)
chr7 (185-267)||(32991047-32991129)
[»] chr6 (3 HSPs)
chr6 (39-116)||(3893374-3893451)
chr6 (39-87)||(10317623-10317671)
chr6 (38-66)||(31606022-31606050)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 50580345 - 50580636
Alignment:
Q  1 cttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50580345 cttgtttgttctaaaggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaat 50580444  T
Q  101 gtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50580445 gtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttc 50580544  T
Q  201 tcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgccttccctaaaattattcatgcacgat 293  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50580545 tcacaccggttggatatttacgatctctcatattgaaaaagtaccattccttttctcccatctttgccttccctaaaa-tattcatgcacgat 50580636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 11462908 - 11462987
Alignment:
Q  38 tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac 117  Q
    ||||||||||| |||||||||||||||||||||  ||| ||||| |||||||| || || |  || ||||||||||||||    
T  11462908 tattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaac 11462987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 1059449 - 1059175
Alignment:
Q  1 cttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaat 100  Q
    |||||| |||||||  |||||||| || || ||||||||||||||||| ||||| ||  |||||||||||| |||||| |  ||||||||||| |||||     
T  1059449 cttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaa 1059350  T
Q  101 gtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgttgctcgattcgttc 200  Q
    ||||||||||| ||||| || || ||||||||||||| ||| || ||  |||||||||||||||| ||||| ||||| ||||||||||||| ||| ||||    
T  1059349 gtcttcttcataccaactaattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgttgctctattagttc 1059250  T
Q  201 tcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgccttcccta 275  Q
    ||||||| |||||||||||||||||||| | | | || ||||||||||| |||   |||||||| ||||||||||    
T  1059249 tcacacctgttggatatttacgatctcttagactgaagaagtaccattcttttgtacccatcttggccttcccta 1059175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 45059076 - 45058993
Alignment:
Q  38 tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaaccaac 121  Q
    |||||||||||||||||||||||||| ||||||  ||| ||||| |||||||| || || |  || |||||||| |||||||||    
T  45059076 tattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaaccaac 45058993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 32991129 - 32991047
Alignment:
Q  185 gttgctcgattcgttctcacaccggttggatatttacgatctctcatattaaaaaagtaccattccttttctcccatctttgc 267  Q
    ||||||| ||| ||||||| ||| ||||||||||| | |||| ||  |  ||||||||||||||| || ||||||||||||||    
T  32991129 gttgctctatttgttctcatacctgttggatattttctatctttctgacaaaaaaagtaccattctttctctcccatctttgc 32991047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
Q  39 attcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaa 116  Q
    |||||||||||||||||||  |||| || |||  ||||||||| |||||||| || || | ||| |||||||||||||    
T  3893451 attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa 3893374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 10317623 - 10317671
Alignment:
Q  39 attcatgcatgacccaattacttttctctcctcgaggagctctgccttt 87  Q
    |||||||||||||||||||  ||||||||||||  |||||||| |||||    
T  10317623 attcatgcatgacccaattggttttctctcctcttggagctctaccttt 10317671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 31606022 - 31606050
Alignment:
Q  38 tattcatgcatgacccaattacttttctc 66  Q
    |||||||||||||||||||||||||||||    
T  31606022 tattcatgcatgacccaattacttttctc 31606050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University