View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17169_low_5 (Length: 430)
Name: NF17169_low_5
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 55364775 - 55364518
Alignment:
| Q |
1 |
ataatattctttagttttttaaaaagaaagtgggacagttaaaatgaatttgtggatgttcattttacttttgctcactataggtttcagaatagaacat |
100 |
Q |
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| T |
55364775 |
ataacattctttagttttttaaaaagaaagtgggacagttaaaatgaatttgtggatgttcattttacttttgctcactataggtttcagaatagaacat |
55364676 |
T |
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| Q |
101 |
tccattcttttcttccttgtttcatcnnnnnnnnnnnnnnnnnnnngaaggatttgtttcatctttaatagttcggatattaggtacccaaaaatgataa |
200 |
Q |
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| T |
55364675 |
tccattcttttcttccttgtttcatctttatttttatttttattttgaaggatttgtttcatctttaatagttcggatattaggtacccaaaaatgataa |
55364576 |
T |
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| Q |
201 |
at-taattaannnnnnnccttccaatttagcagaggnnnnnnntacaaggtcctggta |
257 |
Q |
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| T |
55364575 |
atataattaatttttttccttccaatttagcagaggaaaaaaatacaaggtcctggta |
55364518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 324 - 423
Target Start/End: Complemental strand, 55364451 - 55364352
Alignment:
| Q |
324 |
ctaagagtttcgggttgacctaagctaannnnnnngagaaagagataaatgtaaattctcttttgagtctaaggtctttttgggcaccacccctatgctt |
423 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55364451 |
ctaagagtttcgggttgacctaagctaatttttttgagaaagagataaatgtaaattctcttttgagtctaaggtctttttgggcaccacccctttgctt |
55364352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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