View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17169_low_6 (Length: 426)

Name: NF17169_low_6
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17169_low_6
NF17169_low_6
[»] chr4 (15 HSPs)
chr4 (1-404)||(54147507-54147913)
chr4 (62-189)||(16870567-16870700)
chr4 (205-276)||(16870654-16870724)
chr4 (358-404)||(16870777-16870823)
chr4 (178-272)||(42265400-42265492)
chr4 (257-356)||(54147827-54147927)
chr4 (62-104)||(16870396-16870438)
chr4 (237-299)||(54147869-54147933)
chr4 (316-356)||(16870798-16870838)
chr4 (356-396)||(24225506-24225546)
chr4 (317-377)||(16870705-16870766)
chr4 (356-395)||(42265453-42265492)
chr4 (359-404)||(16870685-16870729)
chr4 (359-396)||(42265426-42265462)
chr4 (276-304)||(7259335-7259363)
[»] chr7 (36 HSPs)
chr7 (1-211)||(21813707-21813918)
chr7 (317-396)||(44338338-44338416)
chr7 (62-211)||(11828578-11828721)
chr7 (62-189)||(46963841-46963974)
chr7 (301-388)||(15623052-15623139)
chr7 (205-276)||(15623104-15623174)
chr7 (297-388)||(15623145-15623236)
chr7 (174-292)||(21813819-21813940)
chr7 (317-388)||(44338430-44338500)
chr7 (205-292)||(44338287-44338375)
chr7 (195-276)||(11828575-11828656)
chr7 (205-276)||(15623197-15623267)
chr7 (132-242)||(11828578-11828688)
chr7 (62-189)||(44338205-44338333)
chr7 (205-292)||(44338379-44338467)
chr7 (205-281)||(15623006-15623081)
chr7 (205-292)||(44338471-44338560)
chr7 (317-365)||(44338522-44338570)
chr7 (23-154)||(6530511-6530643)
chr7 (205-303)||(46963788-46963887)
chr7 (320-388)||(15623238-15623306)
chr7 (358-404)||(15623099-15623145)
chr7 (147-220)||(21813823-21813896)
chr7 (359-396)||(21813850-21813887)
chr7 (358-417)||(44338500-44338559)
chr7 (358-404)||(15623192-15623238)
chr7 (359-404)||(44338318-44338362)
chr7 (359-404)||(44338410-44338454)
chr7 (359-402)||(11828572-11828615)
chr7 (358-401)||(15623009-15623052)
chr7 (273-303)||(26403153-26403183)
chr7 (273-303)||(44338654-44338684)
chr7 (356-393)||(24487088-24487125)
chr7 (359-404)||(46963812-46963856)
chr7 (356-396)||(11828609-11828649)
chr7 (199-239)||(24487088-24487128)
[»] chr2 (20 HSPs)
chr2 (1-253)||(1173541-1173798)
chr2 (62-292)||(38584083-38584322)
chr2 (116-292)||(1173469-1173647)
chr2 (301-377)||(1173447-1173523)
chr2 (301-388)||(1173343-1173430)
chr2 (62-189)||(8986129-8986262)
chr2 (205-302)||(1173273-1173372)
chr2 (205-289)||(1173379-1173465)
chr2 (359-403)||(1173484-1173528)
chr2 (358-417)||(1173284-1173343)
chr2 (205-276)||(8986216-8986286)
chr2 (297-355)||(1173283-1173341)
chr2 (358-404)||(1173390-1173436)
chr2 (116-189)||(32290565-32290642)
chr2 (113-161)||(32290597-32290645)
chr2 (356-396)||(38584202-38584242)
chr2 (301-356)||(38584082-38584137)
chr2 (354-396)||(32290556-32290598)
chr2 (356-417)||(38584084-38584145)
chr2 (356-396)||(38584136-38584176)
[»] chr5 (17 HSPs)
chr5 (3-189)||(9511667-9511854)
chr5 (205-388)||(24136891-24137075)
chr5 (301-417)||(24136927-24137041)
chr5 (62-189)||(11335415-11335537)
chr5 (205-274)||(24137046-24137114)
chr5 (179-293)||(9511782-9511899)
chr5 (195-302)||(11335361-11335469)
chr5 (359-417)||(11335372-11335430)
chr5 (356-401)||(24136919-24136964)
chr5 (344-396)||(24136876-24136928)
chr5 (143-222)||(9511777-9511856)
chr5 (62-109)||(24136725-24136772)
chr5 (358-411)||(24137075-24137127)
chr5 (205-273)||(9511777-9511845)
chr5 (362-396)||(9511811-9511845)
chr5 (301-355)||(11335371-11335425)
chr5 (205-252)||(24136808-24136855)
[»] chr3 (14 HSPs)
chr3 (205-303)||(42530736-42530835)
chr3 (62-222)||(50295478-50295636)
chr3 (301-388)||(46692012-46692099)
chr3 (198-292)||(46692045-46692141)
chr3 (144-290)||(50295527-50295677)
chr3 (358-403)||(46692060-46692105)
chr3 (345-396)||(42530722-42530773)
chr3 (297-353)||(50295620-50295677)
chr3 (205-276)||(46691970-46692041)
chr3 (133-172)||(2593560-2593599)
chr3 (359-404)||(42530767-42530811)
chr3 (358-402)||(46691967-46692012)
chr3 (356-388)||(50295554-50295586)
chr3 (359-411)||(50295619-50295671)
[»] chr8 (19 HSPs)
chr8 (317-396)||(20242015-20242093)
chr8 (317-396)||(20250974-20251052)
chr8 (317-388)||(20242107-20242177)
chr8 (205-292)||(20241964-20242052)
chr8 (205-292)||(20251015-20251103)
chr8 (62-189)||(20241882-20242010)
chr8 (205-292)||(20242056-20242144)
chr8 (205-292)||(20250923-20251011)
chr8 (62-189)||(20251057-20251185)
chr8 (205-292)||(20242148-20242237)
chr8 (317-365)||(20242199-20242247)
chr8 (317-365)||(20250913-20250960)
chr8 (358-417)||(20242177-20242236)
chr8 (359-404)||(20241995-20242039)
chr8 (359-404)||(20242087-20242131)
chr8 (359-404)||(20250936-20250980)
chr8 (359-404)||(20251028-20251072)
chr8 (273-303)||(20242331-20242361)
chr8 (273-303)||(20250799-20250829)
[»] chr6 (22 HSPs)
chr6 (301-395)||(21862276-21862371)
chr6 (296-388)||(28063589-28063679)
chr6 (316-377)||(13167536-13167597)
chr6 (205-276)||(21862241-21862311)
chr6 (358-404)||(21862270-21862316)
chr6 (197-290)||(21862043-21862137)
chr6 (317-388)||(21862102-21862173)
chr6 (205-275)||(21862144-21862213)
chr6 (205-293)||(28063528-28063618)
chr6 (237-292)||(28063622-28063678)
chr6 (360-404)||(28063634-28063678)
chr6 (301-377)||(21862179-21862259)
chr6 (318-376)||(13167445-13167502)
chr6 (358-404)||(21862173-21862219)
chr6 (359-399)||(10741529-10741569)
chr6 (370-404)||(13167527-13167561)
chr6 (116-161)||(13167367-13167412)
chr6 (359-404)||(21862082-21862126)
chr6 (68-109)||(28063772-28063813)
chr6 (117-185)||(13097907-13097975)
chr6 (205-237)||(13167579-13167611)
chr6 (205-241)||(21862335-21862371)
[»] chr1 (15 HSPs)
chr1 (62-211)||(2072369-2072519)
chr1 (62-211)||(2075899-2076049)
chr1 (301-377)||(15630001-15630076)
chr1 (358-404)||(15629944-15629990)
chr1 (205-299)||(15629924-15630019)
chr1 (210-292)||(15630023-15630107)
chr1 (359-404)||(15630036-15630081)
chr1 (195-268)||(19825091-19825164)
chr1 (196-278)||(2072364-2072446)
chr1 (196-278)||(2075894-2075976)
chr1 (75-203)||(19825094-19825223)
chr1 (356-396)||(19825117-19825157)
chr1 (179-242)||(15630044-15630107)
chr1 (147-211)||(15630044-15630108)
chr1 (364-396)||(15630075-15630107)
[»] scaffold0499 (2 HSPs)
scaffold0499 (117-216)||(7233-7329)
scaffold0499 (360-389)||(7304-7333)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 54147507 - 54147913
Alignment:
Q  1 ggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgctttcaatttgtttggttgttaggtgagtcaagatagtgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||    
T  54147507 ggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcattttgaatttgtttggttgttaggtgagtcaagatagtcct 54147606  T
Q  101 cacaattggatattatttgtttggtgggtcaagtgctcataatt----tgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggt 196  Q
    ||||||||| |  | |||||||||| |||||||||||||  |||    |||||||||| || |||| ||||||| | |||  ||||||||||| | ||||    
T  54147607 cacaattggtt--tgtttgtttggtaggtcaagtgctcactattggattgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtcaggt 54147704  T
Q  197 gctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc--tcccccttttgattctttt 294  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |    
T  54147705 gctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctttcccccttttgattcttct 54147804  T
Q  295 gattgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttgg 394  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54147805 gattgattgtttggtgggtcgagtgctcataatttggtttcttct-ccccttttgattcttcaagttggttgtttggtgagtcgagtgctcacaatttgg 54147903  T
Q  395 tttcttctcc 404  Q
    ||||||||||    
T  54147904 tttcttctcc 54147913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 16870567 - 16870700
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 155  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  16870567 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 16870666  T
Q  156 tgagtcaggtgctcacactttagttgtttggtga 189  Q
    ||||||   | |||||||||| ||||||||||||    
T  16870667 tgagtcgatttctcacactttggttgtttggtga 16870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 16870654 - 16870724
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 276  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  16870654 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 16870724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 16870777 - 16870823
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  16870777 atttggttgtttcgtgagtcgagtgctcataatttggtttcttctcc 16870823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 42265400 - 42265492
Alignment:
Q  178 gttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt 272  Q
    |||||||||||| | | ||||||||  ||||||||||||||||||| ||| |||||| |||||||||||||||| |   ||||||||||||||||    
T  42265400 gttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 356
Target Start/End: Original strand, 54147827 - 54147927
Alignment:
Q  257 gtgctcacaatttggtttctcc--cccttttgattcttttgattgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattct 354  Q
    ||||||| |||||||||||| |  ||||||||||||||    ||| |||||||||| ||  |||||||| ||||||||||||||| ||||||||||||||    
T  54147827 gtgctcataatttggtttcttctccccttttgattcttcaagttggttgtttggtgagtcgagtgctcacaatttggtttcttct-ccccttttgattct 54147925  T
Q  355 tc 356  Q
    ||    
T  54147926 tc 54147927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 16870396 - 16870438
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcaca 104  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  16870396 ttcaatttgtttggttgtttggtgagtcaaaatagtgctcaca 16870438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 54147869 - 54147933
Alignment:
Q  237 ttggttgtttggtgagtttggtgctcacaatttggtttctcc--cccttttgattcttttgattg 299  Q
    |||||||||||||||||   |||||||||||||||||||| |  |||||||||||||| ||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattcttctgattg 54147933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 16870798 - 16870838
Alignment:
Q  316 agtgctcataatttggtttcttctcccccttttgattcttc 356  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  16870798 agtgctcataatttggtttcttctccccttttttattcttc 16870838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 24225506 - 24225546
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  24225506 caatttggttgtttggtgaatcgagtgcttacaatttggtt 24225546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 16870705 - 16870766
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttg--attcttcaatttggttgtttggtgagtc 377  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||||||| || |||||||    
T  16870705 gtgctcacaatttggtttcttct-ccccttttgatattcttcaatttggttgattagtgagtc 16870766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 42265453 - 42265492
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggt 395  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  42265453 caatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 16870685 - 16870729
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||    
T  16870685 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc 16870729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 42265426 - 42265462
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42265426 tttggttgtttggtgagtcgagt-ctcacaatttggtt 42265462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 7259363 - 7259335
Alignment:
Q  276 tcccccttttgattcttttgattgattgt 304  Q
    |||||||||||||||||||||||||||||    
T  7259363 tcccccttttgattcttttgattgattgt 7259335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21813707 - 21813918
Alignment:
Q  1 ggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgct---ttcaatttgtttggttgttaggtgagtcaagatagt 97  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||||| |   |||||||||||||||||||||| ||||||||||| |    
T  21813707 ggttcgtcaatttgtctttgtctggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatatt 21813806  T
Q  98 gctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtg 197  Q
     |||||||||||   |||||||||||||| |||||||||||| | |||| ||||||| ||||||  ||||||||| ||| |||| |||||||| || ||     
T  21813807 cctcacaattgg--tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagta 21813904  T
Q  198 ctcacactttggtt 211  Q
    | |||| |||||||    
T  21813905 cccacaatttggtt 21813918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 44338338 - 44338416
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  44338338 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 44338416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 11828721 - 11828578
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 161  Q
    ||||||||||||| ||||  | |||| ||||||||||||||||||| | ||      ||||||||||||||||||||| |||||| |||| || ||||||    
T  11828721 ttcaatttgtttgattgtaggatgagacaagatagtgctcacaatttgtta------gtttggtgggtcaagtgctcacaatttggttgtctggtgagtc 11828628  T
Q  162 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 211  Q
     |||||||||| ||| |||||||||||| ||| || |||||| |||||||    
T  11828627 gggtgctcacattttggttgtttggtgagttaagtactcacaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 46963974 - 46963841
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 155  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  46963974 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 46963875  T
Q  156 tgagtcaggtgctcacactttagttgtttggtga 189  Q
    ||||||   | |||||||||| ||||||||||||    
T  46963874 tgagtcgatttctcacactttggttgtttggtga 46963841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 15623139 - 15623052
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||||||||| ||  |||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||||    
T  15623139 ttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattcttcaatttggttgtttggtgagtctagttctcaca 15623052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 15623174 - 15623104
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 276  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||    
T  15623174 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttct 15623104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 388
Target Start/End: Complemental strand, 15623236 - 15623145
Alignment:
Q  297 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||||||||||||| ||  |||||||| ||||| |||||||||||||||   ||||||||||||||||||||||||||||| ||| ||||||    
T  15623236 ttgattgtttggtgagttgagtgctcacaattttgtttcttctccccctaccgattcttcaatttggttgtttggtgagtctagttctcaca 15623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 292
Target Start/End: Original strand, 21813819 - 21813940
Alignment:
Q  174 tttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttgg-- 271  Q
    |||| ||||||||||| | | ||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||  |  || | ||||||||||      
T  21813819 tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggtt 21813918  T
Q  272 -tttctcccccttttgattctt 292  Q
     |||||||||||||||||||||    
T  21813919 ttttctcccccttttgattctt 21813940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 44338430 - 44338500
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44338430 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 44338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 44338287 - 44338375
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338287 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 11828656 - 11828575
Alignment:
Q  195 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 276  Q
    ||||||||| ||||||||| |||||||||  || ||||||||||||||||||||||||||  || |||||||||||||||||    
T  11828656 gtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttct 11828575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 15623267 - 15623197
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 276  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||| ||||||    
T  15623267 tttggttgtttggtgagtctagttctcaca-tttgattgtttggtgagttgagtgctcacaattttgtttct 15623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 11828688 - 11828578
Alignment:
Q  132 agtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctc 231  Q
    |||||||| |||||||| ||||| || |||| ||||||||| ||| ||||| |||||| |  |||||||||| ||||||||||||||||||  ||| |||    
T  11828688 agtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactc 11828589  T
Q  232 acattttggtt 242  Q
    ||| |||||||    
T  11828588 acaatttggtt 11828578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 44338205 - 44338333
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 159  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  44338205 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 44338303  T
Q  160 tcaggtgctcacactttagttgtttggtga 189  Q
    ||  || |||||| ||| ||||||||||||    
T  44338304 tcgagttctcacattttggttgtttggtga 44338333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 44338379 - 44338467
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  44338379 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 44338467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 15623081 - 15623006
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctccccc 281  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||| ||| ||||||| ||||    
T  15623081 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgtgtgctcacgattcggtttcttcccc 15623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 44338471 - 44338560
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 292  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  44338471 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 44338560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 44338522 - 44338570
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 365  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44338522 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 6530511 - 6530643
Alignment:
Q  23 tggttcgtttggttcagtttggtttgatttggattcgcttt---caatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttg 119  Q
    |||||| |||||||| |||  |||||||||||||||| |||   ||||||||||| ||||| ||||||||||||||||  ||||||||||   || | ||    
T  6530511 tggttcatttggttccgttcagtttgatttggattcgttttgttcaatttgtttgattgttgggtgagtcaagatagtattcacaattgg--tttgtctg 6530608  T
Q  120 tttggtgggtcaagtgctcataatttgtttgtttg 154  Q
    ||||||| ||||| || ||| |||||| |||||||    
T  6530609 tttggtgagtcaaatgttcacaatttggttgtttg 6530643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 46963887 - 46963788
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 302  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||| |||||| | |||||||    
T  46963887 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttcttctcccctttttattcttctcattgatt 46963789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 15623306 - 15623238
Alignment:
Q  320 ctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||| ||||||||||||||||||| |  || ||||||||||||||||||||||||||| ||| ||||||    
T  15623306 ctcacaatttggtttcttctccccgtactggttcttcaatttggttgtttggtgagtctagttctcaca 15623238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 15623145 - 15623099
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  15623145 atttggttgtttggtgagttgagtgctcacaattttgtttcttctcc 15623099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 21813823 - 21813896
Alignment:
Q  147 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtga 220  Q
    |||||||| ||||||| ||||||||||||| |||||||||||| |   ||||||||| |||||||| |||||||    
T  21813823 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtga 21813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 21813850 - 21813887
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21813850 tttggttgtttggtgagtcgagtgctcacaatttggtt 21813887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 44338500 - 44338559
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccctttgcttct 417  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| || |||| ||||    
T  44338500 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattct 44338559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 15623238 - 15623192
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  15623238 atttgattgtttggtgagttgagtgctcacaattttgtttcttctcc 15623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 44338318 - 44338362
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  44338318 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 44338362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 44338410 - 44338454
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  44338410 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 44338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 11828615 - 11828572
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttct 402  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  11828615 tttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 15623052 - 15623009
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttc 401  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  15623052 atttggttgtttggtgagtcgtgtgctcacgattcggtttcttc 15623009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 303
Target Start/End: Original strand, 26403153 - 26403183
Alignment:
Q  273 ttctcccccttttgattcttttgattgattg 303  Q
    |||||||||||||||||||||||||||||||    
T  26403153 ttctcccccttttgattcttttgattgattg 26403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 303
Target Start/End: Original strand, 44338654 - 44338684
Alignment:
Q  273 ttctcccccttttgattcttttgattgattg 303  Q
    |||||||||||||||||||||||||||||||    
T  44338654 ttctcccccttttgattcttttgattgattg 44338684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 24487125 - 24487088
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttg 393  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24487125 caatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 46963856 - 46963812
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||    
T  46963856 tttggttgtttggtgag-catgtgctcacaatttggtttcttctcc 46963812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 11828649 - 11828609
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    |||||||||||| |||||||||| ||||||||| |||||||    
T  11828649 caatttggttgtctggtgagtcgggtgctcacattttggtt 11828609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
Q  199 tcacactttggttgtttggtgagtctagttctcacattttg 239  Q
    ||||| ||||||||||||||||||| |||||||||| ||||    
T  24487128 tcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1173798 - 1173541
Alignment:
Q  1 ggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgctt---tcaatttgtttggttgttaggtgagtcaagatagt 97  Q
    ||||| ||||||||| || || ||| ||||||||||  |||  ||||||||||| |||| ||   | |||||||||||||||||||||||||||||||||    
T  1173798 ggttcatcaatttgttttcgcttggctcgtttggtttggttcagtttgatttggtttcgtttgattaaatttgtttggttgttaggtgagtcaagatagt 1173699  T
Q  98 gctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattagg 195  Q
     |||| |||||| |   || ||||||||||||||||||||||||||||||||||||||| || |||  ||||||| | |||  ||||||||||| |   |    
T  1173698 tctcaaaattggtttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgag 1173599  T
Q  196 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagt 253  Q
    | |||| | ||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  1173598 tactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgagt 1173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 292
Target Start/End: Complemental strand, 38584322 - 38584083
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattat---ttgtttggtgggtcaagtgctcataatttgtttgtttgatga 158  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | | |  |   ||||||||||||| |||  |||| |||||| ||||||| |||    
T  38584322 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttggtga 38584224  T
Q  159 gtcaggtgctcacactttagttgtttggt----gaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtt 254  Q
    |||  ||||||||| ||| ||||||||||    || | | ||||||||| |||||| |||||||||||  ||| |||||| |||||||||||||||||||    
T  38584223 gtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagtt 38584124  T
Q  255 tggtgctcacaatttg---gtttctcccccttttgattctt 292  Q
       |||||||||||||    |||||||||||||||||||||    
T  38584123 aaatgctcacaatttgattttttctcccccttttgattctt 38584083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 1173647 - 1173469
Alignment:
Q  116 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgttt 215  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  || |||| | ||| |||||||||||| |   |||||||||  ||| ||||||    
T  1173647 tttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgttt 1173548  T
Q  216 ggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 292  Q
    |||||||  ||  |||||| |||||||||||||||||| | ||||||||||||||||   ||||| ||||||||||||||    
T  1173547 ggtgagt-aagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattctt 1173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 1173523 - 1173447
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 377  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1173523 ttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattcttcaatttggttgtttggtgagtc 1173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 1173430 - 1173343
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||||||||| ||  ||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||    
T  1173430 ttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgattattcaatttggttgtttggtgagtctagttctcaca 1173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 8986129 - 8986262
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat------attatttgtttggtgggtcaagtgctcataatttgtttgtttga 155  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||| |       || ||||||||||||||||||  ||||||||||| |||||||     
T  8986129 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgtttgg 8986228  T
Q  156 tgagtcaggtgctcacactttagttgtttggtga 189  Q
    ||||||   | |||||||||| ||||||||||||    
T  8986229 tgagtcgatttctcacactttggttgtttggtga 8986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 1173372 - 1173273
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattcttttgattgat 301  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  |||||||    
T  1173372 tttggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattcttgggattgat 1173274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 1173465 - 1173379
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgatt 289  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||| |||||||||||   |||||||||||||||||    
T  1173465 tttggttgtttggtgagtctaattctcacattt-ggttgtttggtgagtctagtgcacacaatttggtttcttctcccccttttgatt 1173379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 1173528 - 1173484
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctc 403  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  1173528 tttggttgtttggtgagtctagtgctcacaatttggtttcttctc 1173484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 417
Target Start/End: Complemental strand, 1173343 - 1173284
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccctttgcttct 417  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| || |||| ||||    
T  1173343 atttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattct 1173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 8986216 - 8986286
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 276  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||  | ||||||||||||||||||||    
T  8986216 tttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcat-gtgctcacaatttggtttct 8986286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 1173341 - 1173283
Alignment:
Q  297 ttgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 355  Q
    |||||||||| ||| ||  |||||||| |||||||||||||||||||||||||||||||    
T  1173341 ttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 1173436 - 1173390
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  1173436 atttggttgtttggtgagtctagtgcacacaatttggtttcttctcc 1173390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 32290565 - 32290642
Alignment:
Q  116 tttgtttggtgggtcaagtgctcataatttg----tttgtttgatgagtcaggtgctcacactttagttgtttggtga 189  Q
    |||||||||||||||||||||||| ||||||    ||| |||| || |||| ||||||||| ||| ||||||||||||    
T  32290565 tttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtga 32290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 32290597 - 32290645
Alignment:
Q  113 ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 161  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  32290597 ttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtc 32290645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 38584242 - 38584202
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  38584242 caatttgcttgtttggtgagtcgagtgctcacattttggtt 38584202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 38584137 - 38584082
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttc 356  Q
    |||||||||| || || |||||| |||||| ||| |||||||||||||||||||||    
T  38584137 ttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattcttc 38584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 32290556 - 32290598
Alignment:
Q  354 ttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||    
T  32290556 ttcaatttgtttgtttggtgggtcaagtgctcacaatttggtt 32290598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 38584145 - 38584084
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccctttgcttct 417  Q
    |||||||||||||||||||||  | ||||||||||||| ||| |||||| || |||| ||||    
T  38584145 caatttggttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattct 38584084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 38584176 - 38584136
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  38584176 caatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 9511667 - 9511854
Alignment:
Q  3 ttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcgct---ttcaatttgtttggttgttaggtgagtcaagatagtgc 99  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||   || |||||||||||||||||||||||| |||||||| |    
T  9511667 ttcgtcaatttgtctttgcatggttcgtgtggttcagttcggtttgatttggattcgcttggttgaatttgtttggttgttaggtgagttaagatagtcc 9511766  T
Q  100 tcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtga 189  Q
    |||||||| |   || ||||||||||| ||| |||||||| | || | ||||||| ||||||  ||||||||| ||| ||||||||||||    
T  9511767 tcacaattcg--tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtga 9511854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 205 - 388
Target Start/End: Original strand, 24136891 - 24137075
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 302  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||||||   ||||||||||||| ||||||  ||||||| ||||||||    ||| ||    
T  24136891 tttggttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattttgtttcttccccccttctgattcttcaatttggtt 24136990  T
Q  303 gtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||||||| ||  ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  24136991 gtttggtgagtctagttctcacaatttggtttcttctccccc-tttgattcttcaatttggttgtttggtgagtctagttctcaca 24137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 301 - 417
Target Start/End: Original strand, 24136927 - 24137041
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtttctt 400  Q
    |||||||||| ||  |||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24136927 ttgtttggtgagtcgagtgctcacaattttgtttcttc-cccccttctgattcttcaatttggttgtttggtgagtctagttctcacaatttggtttctt 24137025  T
Q  401 ctcctccctttgcttct 417  Q
    |||| ||||||| ||||    
T  24137026 ctcc-ccctttgattct 24137041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 11335537 - 11335415
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 161  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |  | ||||||||| |||||||||||||| |||||||||||||| || |      
T  11335537 ttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtt--tgtttgtttggcgggtcaagtgctcacaatttgtttgtttggtggg-- 11335443  T
Q  162 aggtgctcacactttagttgtttggtga 189  Q
    | || |||||||||| ||||||||||||    
T  11335442 aagtactcacactttggttgtttggtga 11335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 24137046 - 24137114
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggttt 274  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  24137046 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggttt 24137114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 9511782 - 9511899
Alignment:
Q  179 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc--- 275  Q
    ||||||||||| |   |||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||   | ||||||||||| ||||       
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttctta 9511881  T
Q  276 tcccccttttgattcttt 293  Q
    ||||||||||||||||||    
T  9511882 tcccccttttgattcttt 9511899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 11335469 - 11335361
Alignment:
Q  195 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattct 291  Q
    ||||||||| |||| |||||||||| |   ||| |||||| ||||||||||||||||||    |||||||||||||||||||   |||||||||||||||    
T  11335469 gtgctcacaatttgtttgtttggtggga--agtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattct 11335372  T
Q  292 tttgattgatt 302  Q
    |||||||||||    
T  11335371 tttgattgatt 11335361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 11335430 - 11335372
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccctttgcttct 417  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  11335430 tttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattct 11335372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 24136919 - 24136964
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtttcttc 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  24136919 caatttggttgtttggtgagtcgagtgctcacaattttgtttcttc 24136964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 24136876 - 24136928
Alignment:
Q  344 cttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    |||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  24136876 cttttgattcttcaatttggttgtttggtgagccgacttctcacaatttggtt 24136928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 9511777 - 9511856
Alignment:
Q  143 tttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 222  Q
    |||||||||||| ||||||  ||||||||||||  |||||||||||| |   ||||||||| ||||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagt 9511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 24136725 - 24136772
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattgg 109  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  24136725 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattgg 24136772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 24137075 - 24137127
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctcccttt 411  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  24137075 atttggttgtttggtgagttgagtgctcacaatttggttt-ttctccccccttt 24137127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 9511777 - 9511845
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtt 273  Q
    |||| |||||||||||||| ||| |||||| || |||||||||||||||   |||||||||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 396
Target Start/End: Original strand, 9511811 - 9511845
Alignment:
Q  362 ggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    |||||||||||||||||||||||||||||||||||    
T  9511811 ggttgtttggtgagtcgagtgctcacaatttggtt 9511845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 11335425 - 11335371
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattctt 355  Q
    |||||||||| ||  | |||||| |||||||||||||||||||||||||||||||    
T  11335425 ttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt 11335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 24136808 - 24136855
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgag 252  Q
    |||| ||||| |||||||| |||||||||||| |||||||||||||||    
T  24136808 tttgcttgttgggtgagtcgagttctcacattatggttgtttggtgag 24136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 42530736 - 42530835
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattgatt 302  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   ||||||||||||||| |||||||||    
T  42530736 tttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattcttctgattgatt 42530834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 50295478 - 50295636
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggatattatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 161  Q
    ||||||||||||||||||| | |||||  ||||||||| ||||||| |||  | ||||||| |||||||||||||||| |||||| ||||||  ||||||    
T  50295478 ttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgat--tgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtc 50295575  T
Q  162 aggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagt 222  Q
      ||||||||||||  |||||||||||| ||  || |||  |||||| |||||||||||||    
T  50295576 gagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagt 50295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 46692099 - 46692012
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||||||||| ||  |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  46692099 ttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattcttcaatttggtggtttggtgagtctagttctcaca 46692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 46692141 - 46692045
Alignment:
Q  198 ctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 292  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||   ||||||||||||||||   ||||| ||||||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtttcttctctcccttttgattctt 46692045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 290
Target Start/End: Original strand, 50295527 - 50295677
Alignment:
Q  144 ttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggttg 243  Q
    ||||||||||  || |||| ||||||||| ||| ||||||| |||| |   |||||||||||| |||||||||||||||  |||||||  | |||| |||    
T  50295527 ttgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattg 50295626  T
Q  244 tttggtgagtttggtgctcacaatttggtttct----cccccttttgattc 290  Q
    |||||||||||  || |||| ||||||||||||    ||||||||||||||    
T  50295627 tttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 46692105 - 46692060
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctc 403  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  46692105 atttagttgtttggtgagtcgagtgctcacaatttggtttcttctc 46692060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 42530722 - 42530773
Alignment:
Q  345 ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  42530722 ttttgattctttaatttggttgtttggtgagtcgagttctcacactttggtt 42530773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 50295620 - 50295677
Alignment:
Q  297 ttgattgtttggtgggtgaagtgctcataatttggtttcttct-cccccttttgattc 353  Q
    |||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||    
T  50295620 ttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 46692041 - 46691970
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgttt-ggtgagtttggtgctcacaatttggtttct 276  Q
    |||||| |||||||||||||||||||||||||| |||||||| |||||||   ||| ||||||||||||||||    
T  46692041 tttggtggtttggtgagtctagttctcacattt-ggttgttttggtgagtcgagtgttcacaatttggtttct 46691970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 2593599 - 2593560
Alignment:
Q  133 gtgctcataatttgtttgtttgatgagtcaggtgctcaca 172  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2593599 gtgctcataatttgtttgtttgatgagtcaagtgctcaca 2593560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 42530767 - 42530811
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  42530767 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 42530811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 46692012 - 46691967
Alignment:
Q  358 atttggttgttt-ggtgagtcgagtgctcacaatttggtttcttct 402  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||    
T  46692012 atttggttgttttggtgagtcgagtgttcacaatttggtttcttct 46691967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 50295554 - 50295586
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||||||||||||| ||||||||||||||||||    
T  50295554 caatttggttgtttcgtgagtcgagtgctcaca 50295586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 50295619 - 50295671
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctcccttt 411  Q
    |||| |||||||||||||  ||| |||| ||||||||||||||||| ||||||    
T  50295619 tttgattgtttggtgagttaagtactcataatttggtttcttctccccccttt 50295671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 20242015 - 20242093
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20242015 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20242093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 20251052 - 20250974
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||    
T  20251052 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtggtttggtgagtcgagttctcacactttggtt 20250974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 20242107 - 20242177
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  20242107 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttggtgagtagagttctcaca 20242177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 20241964 - 20242052
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20241964 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 20251103 - 20251015
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251103 tttgcttgtttggtgagtcgagttctcacattttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20251015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 20241882 - 20242010
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 159  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20241882 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20241980  T
Q  160 tcaggtgctcacactttagttgtttggtga 189  Q
    ||  || |||||| ||| ||||||||||||    
T  20241981 tcgagttctcacattttggttgtttggtga 20242010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 20242056 - 20242144
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20242056 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 20251011 - 20250923
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||  | ||||||||||||||||||||   |||||||||||||||    
T  20251011 tttggtggtttggtgagtcgagttctcacactttggttgtttggtgagcgt-gtgctcacaatttggtttcttctccccttttgattctt 20250923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 20251185 - 20251057
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 159  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| | |   |  ||||||||||||||| ||  ||||||||||| ||||||| ||||    
T  20251185 ttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttggtgag 20251087  T
Q  160 tcaggtgctcacactttagttgtttggtga 189  Q
    ||  || |||||| ||| ||||||||||||    
T  20251086 tcgagttctcacattttggttgtttggtga 20251057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 20242148 - 20242237
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggt---ttctcccccttttgattctt 292  Q
    ||||||||||||||||||  |||||||||| ||||||||| ||||||||   ||||||||||||||||   ||||||||||||||||||||    
T  20242148 tttggttgtttggtgagtagagttctcaca-tttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattctt 20242237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 20242199 - 20242247
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 365  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20242199 gtgctcacaatttggtttcttctcccccttttgattcttcaatttggtt 20242247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 20250960 - 20250913
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattcttcaatttggtt 365  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20250960 gtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggtt 20250913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 20242177 - 20242236
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcctccctttgcttct 417  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||| || |||| ||||    
T  20242177 atttggttgtctggtgagtagtgtgctcacaatttggtttcttctcccccttttgattct 20242236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 20241995 - 20242039
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20241995 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20242039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 20242087 - 20242131
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20242087 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20242131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 20250980 - 20250936
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20250980 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20250936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 20251072 - 20251028
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  20251072 tttggttgtttggtgag-cgtgtgctcacaatttggtttcttctcc 20251028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 303
Target Start/End: Original strand, 20242331 - 20242361
Alignment:
Q  273 ttctcccccttttgattcttttgattgattg 303  Q
    |||||||||||||||||||||||||||||||    
T  20242331 ttctcccccttttgattcttttgattgattg 20242361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 303
Target Start/End: Complemental strand, 20250829 - 20250799
Alignment:
Q  273 ttctcccccttttgattcttttgattgattg 303  Q
    |||||||||||||||||||||||||||||||    
T  20250829 ttctcccccttttgattcttttgattgattg 20250799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 21862276 - 21862371
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc-ttttgattcttcaatttggttgtttggtgagtcgagtgctcacaatttggt 395  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  21862276 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattcttcaatttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 28063679 - 28063589
Alignment:
Q  296 attgattgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    |||| |||||||||| || | ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||    
T  28063679 attggttgtttggtgagtcaggtgctcacaatttggtttcttctccc--ttttgattcttcaatttggttgtttggtgagtctagttctcaca 28063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 13167536 - 13167597
Alignment:
Q  316 agtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 377  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13167536 agtgctcacagtttggtttcttctcccccttctgattcttcaatttggttgtttggtgagtc 13167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21862241 - 21862311
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct 276  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||   ||||||||||||||||||||    
T  21862241 tttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttct 21862311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 21862270 - 21862316
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21862270 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 21862316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 21862043 - 21862137
Alignment:
Q  197 gctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattc 290  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||||||||| ||||  | ||||||||||||||||||||   |||||||||||||    
T  21862043 gctcacaatttgcttgtttggtgagtcgaattctcacattttggttgtttgttgagcgt-gtgctcacaatttggtttcttctccccttttgattc 21862137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 21862102 - 21862173
Alignment:
Q  317 gtgctcataatttggtttcttctcccccttttgattc-ttcaatttggttgtttggtgagtcgagtgctcaca 388  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||    
T  21862102 gtgctcacaatttggtttcttctcccc-ttttgattcgttcaatttggttgtttggtgagtctagttctcaca 21862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 21862144 - 21862213
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttc 275  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||  ||||||||||    
T  21862144 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtttc 21862213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 28063618 - 28063528
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct---cccccttttgattcttt 293  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||   | ||| ||||||| |||||   |||||||||||||||||    
T  28063618 tttggttgtttggtgagtctagttctcaca-tttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattcttt 28063528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 28063678 - 28063622
Alignment:
Q  237 ttggttgtttggtgagtttggtgctcacaatttggtttc-tcccccttttgattctt 292  Q
    |||||||||||||||||  |||||||||||||||||||| || ||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctcccttttgattctt 28063622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 28063678 - 28063634
Alignment:
Q  360 ttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  28063678 ttggttgtttggtgagtcaggtgctcacaatttggtttcttctcc 28063634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 21862179 - 21862259
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctccccc----ttttgattcttcaatttggttgtttggtgagtc 377  Q
    |||||||||| ||  ||||||||  |||||||||| ||||||||    || ||||||||||||||||||||||||||||||    
T  21862179 ttgtttggtgagtcgagtgctcaatatttggtttcctctcccccccccttctgattcttcaatttggttgtttggtgagtc 21862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 13167445 - 13167502
Alignment:
Q  318 tgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagt 376  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  13167445 tgctcacaatttggtgtcttctcccc-ttttggttcttcaatttggttgtgtggtgagt 13167502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 21862173 - 21862219
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||    
T  21862173 atttggttgtttggtgagtcgagtgctcaatatttggtttcctctcc 21862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 10741529 - 10741569
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttct 399  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  10741529 tttggttgttcggtgagtcgagtactcacaatttggtttct 10741569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 13167527 - 13167561
Alignment:
Q  370 ggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||||| |||||||||||||||    
T  13167527 ggtgagtcgagtgctcacagtttggtttcttctcc 13167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 13167367 - 13167412
Alignment:
Q  116 tttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtc 161  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  13167367 tttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtc 13167412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 21862082 - 21862126
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    |||||||||||| |||| || |||||||||||||||||||||||||    
T  21862082 tttggttgtttgttgag-cgtgtgctcacaatttggtttcttctcc 21862126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 28063813 - 28063772
Alignment:
Q  68 ttgtttggttgttaggtgagtcaagatagtgctcacaattgg 109  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  28063813 ttgtttggttgttaggtgagttaagattgtgctcacatttgg 28063772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 13097907 - 13097975
Alignment:
Q  117 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttg 185  Q
    ||||||| || ||| |||||||| || ||||||||||| |||| || ||||||||| ||| ||||||||    
T  13097907 ttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggttgtttg 13097975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 13167579 - 13167611
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattt 237  Q
    |||||||||||||||||||||||||| ||||||    
T  13167579 tttggttgtttggtgagtctagttcttacattt 13167611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 21862335 - 21862371
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggt 241  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  21862335 tttggttgtttggtgagtctaattctcacactttggt 21862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 2072519 - 2072369
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 159  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| ||||||||||||    
T  2072519 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttgattgtttggtgggtgggtgat-tgctcacaatttgattgtttgatgag 2072421  T
Q  160 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 211  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2072420 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2072369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 2076049 - 2075899
Alignment:
Q  62 ttcaatttgtttggttgttaggtgagtcaagatagtgctcacaattggat--attatttgtttggtgggtcaagtgctcataatttgtttgtttgatgag 159  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||| |  ||| |||| | ||||||| |  |||||| |||||| |||||||| |||    
T  2076049 ttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttaattgtttggtgggtgggtgat-tgctcacaatttggttgtttgacgag 2075951  T
Q  160 tcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 211  Q
    ||  ||||||| ||||| |||||||||||| ||| || |||||| |||||||    
T  2075950 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtt 2075899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 15630076 - 15630001
Alignment:
Q  301 ttgtttggtgggtgaagtgctcataatttggtttcttctcccccttttgattcttcaatttggttgtttggtgagtc 377  Q
    |||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15630076 ttgtttggtgagtcgagtgctcacaatttggtttcttctcccc-ttttgattcttcaatttggttgtttagtgagtc 15630001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 15629990 - 15629944
Alignment:
Q  358 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15629990 atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 15629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 15630019 - 15629924
Alignment:
Q  205 tttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattcttttgattg 299  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||||   ||||||||||||||||||||   |||||| |||||||| ||||||    
T  15630019 tttggttgtttagtgagtctaattctcacattt-ggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttatgattcttctgattg 15629924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 15630107 - 15630023
Alignment:
Q  210 ttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttct--cccccttttgattctt 292  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||   ||||||||||||||||||||   |||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctccccttttgattctt 15630023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 15630081 - 15630036
Alignment:
Q  359 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15630081 tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcc 15630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 19825164 - 19825091
Alignment:
Q  195 gtgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatt 268  Q
    ||||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||||||||  ||||||||||||    
T  19825164 gtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 2072446 - 2072364
Alignment:
Q  196 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 278  Q
    |||||||| |||| ||||||| |||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2072446 tgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2072364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 2075976 - 2075894
Alignment:
Q  196 tgctcacactttggttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctcc 278  Q
    |||||||| ||||||||||||  ||||| ||| |||| | |||||||||||||||||||  || |||||||||||||||||||    
T  2075976 tgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttctcc 2075894  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 19825223 - 19825094
Alignment:
Q  75 gttgttaggtgagtcaagatagtgctcacaattggata--ttatttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcaca 172  Q
    |||||| |||||||||||||| ||||||||||| | |   || |||| |||||| || ||||||||| |||||| |||||||  |||||  |||||||||    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagt-aagtgctcacaatttggttgtttggcgagtcgagtgctcaca 19825125  T
Q  173 ctttagttgtttggtgaattaggtgctcaca 203  Q
     ||| |||||||||||| ||| |||||||||    
T  19825124 atttggttgtttggtgagttaagtgctcaca 19825094  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 19825157 - 19825117
Alignment:
Q  356 caatttggttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19825157 caatttggttgtttggcgagtcgagtgctcacaatttggtt 19825117  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 15630107 - 15630044
Alignment:
Q  179 ttgtttggtgaattaggtgctcacactttggttgtttggtgagtctagttctcacattttggtt 242  Q
    ||||||||||| |   ||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  147 tttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggtt 211  Q
    |||||||| ||||||  ||||||||||||| |||||||||||| |   ||||||||| |||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Complemental strand, 15630107 - 15630075
Alignment:
Q  364 ttgtttggtgagtcgagtgctcacaatttggtt 396  Q
    ||||||||||||||||||||||||| |||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggtt 15630075  T

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Target: scaffold0499 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 7329 - 7233
Alignment:
Q  117 ttgtttggtgggtcaagtgctcataatttgtttgtttgatgagtcaggtgctcacactttagttgtttggtgaattaggtgctcacactttggttgtttg 216  Q
    |||||||||| ||| |||||||| || ||| ||||||| |||| ||  |||||||| |||||||   |||||| | ||||||||||| ||||||||||||    
T  7329 ttgtttggtgagtcgagtgctcacaaattgattgtttgttgagacaaatgctcacaatttagtt---tggtgagtcaggtgctcacaatttggttgtttg 7233  T

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Target: scaffold0499; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 389
Target Start/End: Complemental strand, 7333 - 7304
Alignment:
Q  360 ttggttgtttggtgagtcgagtgctcacaa 389  Q
    ||||||||||||||||||||||||||||||    
T  7333 ttggttgtttggtgagtcgagtgctcacaa 7304  T

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