View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17169_low_8 (Length: 405)
Name: NF17169_low_8
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 3721074 - 3721294
Alignment:
| Q |
13 |
aaggacatttagaaagaacctccacgttgaatctcaaacaaaaatgtcactataaaagagagaaatgtacaaaactagatgattttatggctattacaca |
112 |
Q |
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| T |
3721074 |
aaggacatttagaaagaacctcgacgttgaatctcaaacaaaaatgtcactataaaagagagaaatgtacaaaactagatgattttatggctattacaca |
3721173 |
T |
|
| Q |
113 |
actgaaaattctcttgtaagttgtaacatactccaacaaactaaaagaccagaccacaacaacagaacaaactacaaacaactaaggcagtagaaatgct |
212 |
Q |
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| T |
3721174 |
actgaaaattctcttttaagttgtaacatactccaacaaactaaaagaccagacc---acaacagaacaaactacaaacaactaaggcagtagaaatgct |
3721270 |
T |
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| Q |
213 |
acaataagtttaacacttaaaatc |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
3721271 |
acaataagtttaacacttaaaatc |
3721294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 3360622 - 3360544
Alignment:
| Q |
41 |
gaatctcaaacaaaaatgtcactataaaagagagaaatgtacaaaactagatgattttatggctattacacaactgaaa |
119 |
Q |
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| T |
3360622 |
gaatctgaaacaaaaatgttatcataaaagagagagatgtacaaaagtagatgagtttatggctactacacaattgaaa |
3360544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 236 - 386
Target Start/End: Complemental strand, 25323248 - 25323098
Alignment:
| Q |
236 |
ctgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttt |
335 |
Q |
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| T |
25323248 |
ctgttaattattgcttttggactgcattacgtggctgatttatctttattccctattgtttcagttttttattttagtcaataagtggtacctacacttt |
25323149 |
T |
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| Q |
336 |
aggagaaagcagttgttgttatcccacgttcctaatttagtggtgatgtag |
386 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
25323148 |
aggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtag |
25323098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 386
Target Start/End: Original strand, 15537144 - 15537292
Alignment:
| Q |
237 |
tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttta |
336 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15537144 |
tgttaattattgcttttggactgcattgcgtggctgatttatctttattttctatt-tttcagttttttattttagtcaataagtggtacctacacttta |
15537242 |
T |
|
| Q |
337 |
ggagaaagcagttgttgttatcccacgttcctaatttagtggtgatgtag |
386 |
Q |
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| T |
15537243 |
ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtag |
15537292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 16937480 - 16937589
Alignment:
| Q |
235 |
tctgttaattatt-gctttt-ggactgcattacgtggctg--atttatctttattctctattgtttcagttttttattttagtcaataagtggtacctac |
330 |
Q |
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||||||||||||| |||||| |||||||||||||||||| ||||||| ||||| | | |||||||||||| | ||||||||||| |||||| ||||| |
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| T |
16937480 |
tctgttaattatttgctttttggactgcattacgtggcttttatttatccttattttattttgtttcagtttagtgttttagtcaattagtggttcctac |
16937579 |
T |
|
| Q |
331 |
actttaggag |
340 |
Q |
| |
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| |||||||| |
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|
| T |
16937580 |
attttaggag |
16937589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 18010865 - 18011015
Alignment:
| Q |
236 |
ctgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18010865 |
ctgttaattattgcttttggactgcattacgtggctgatttatctttattccctattgtttcagttttttattttagtcaataagtggtacctacacttt |
18010964 |
T |
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| Q |
336 |
aggagaaagcagttgttgttatcccacgttcctaatttagtggtgatgtag |
386 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
18010965 |
aggagaaagcagttgttgttatcccacgatcctagtttagtggtgatgtag |
18011015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 237 - 386
Target Start/End: Original strand, 18015088 - 18015227
Alignment:
| Q |
237 |
tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttta |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
18015088 |
tgttaattattgcttttggactgcattacgtggctgatttatctttattccctattgtttcagttttttattttagtcaataagtgg----------tta |
18015177 |
T |
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| Q |
337 |
ggagaaagcagttgttgttatcccacgttcctaatttagtggtgatgtag |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18015178 |
ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtag |
18015227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 386
Target Start/End: Complemental strand, 42040023 - 42039874
Alignment:
| Q |
237 |
tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattgtttcagttttttattttagtcaataagtggtacctacacttta |
336 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42040023 |
tgttaattattgcttttggactgcattacgtggctgatttatctttattctctattatttcagttttttattttagtcaataagtagtacctacacttta |
42039924 |
T |
|
| Q |
337 |
ggagaaagcagttgttgttatcccacgttcctaatttagtggtgatgtag |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
42039923 |
ggagaaagcagttgttgttatcccacgttcctagtttagtggtgatgtag |
42039874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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