View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17169_low_9 (Length: 381)
Name: NF17169_low_9
Description: NF17169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17169_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 3382681 - 3383032
Alignment:
| Q |
13 |
aaaatccccaaaataagataaatgtttaattttcatataagttgaattttgattgtggtgttgaatttcaattaagctgtttagattgcgatgcacactt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3382681 |
aaaatccccaaaataagataaatgtttaattttcatataagttgaattttgattgtggtgttgaacttcaattaagctgtttagattgcgatgcacactt |
3382780 |
T |
|
| Q |
113 |
tttgttttccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttgaactttcaatcattgatatgtcattag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3382781 |
tttgttttccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttgaactttcaatcattgatatgtcattag |
3382880 |
T |
|
| Q |
213 |
acaattaatgactagaaattggcacaatggattgattttaatttcagaattttggatgaagttttttattagaattcataaataacttgagatcgaatat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3382881 |
acaattaatgactagaaattggcacaatgaattgattttgatttcagaattttggatgaagttttttattagaattcataaataacttctgatcgaatat |
3382980 |
T |
|
| Q |
313 |
catggttaactagcggtttgttcgactgcaacaaataatgaaataagtttca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3382981 |
catggttaactagcggtttgttcgactgcaacaaataatgaaataaatttca |
3383032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 36487927 - 36487749
Alignment:
| Q |
13 |
aaaatccccaaaataagataaa---tgtttaattttcatataagttgaattttgattgtggtgttgaatttcaattaagctgtttagattgcgatgcaca |
109 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||| ||||||| ||| ||| |
|
|
| T |
36487927 |
aaaatccccaaaataagatacaagctgtttacctttcatataaattcaatttcgattgcggtgttgaatttcaattaagctgttcagattgcaatgtaca |
36487828 |
T |
|
| Q |
110 |
ctttttgttttccacgtgaactccatttatttggtaacaatattaagggataattcataccaatttttggttgttgaac |
188 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | | || ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
36487827 |
atttttgttttccacatgaactccatttatttggcagcgatgttaagggataattcatatcaatttttgtttgttgaac |
36487749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 36487732 - 36487695
Alignment:
| Q |
178 |
ggttgttgaactttcaatcattgatatgtcattagaca |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
36487732 |
ggttgttgaactttcaatcattaatatgccattagaca |
36487695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University