View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_high_10 (Length: 343)
Name: NF1716_high_10
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 4840749 - 4841063
Alignment:
| Q |
18 |
caaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacacaccnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4840749 |
caaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactcttatcatcacacaccttttt |
4840848 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnnnnaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840849 |
tttttataattttttttaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattatt |
4840948 |
T |
|
| Q |
218 |
aatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcgtttccgttataatagtccttatgaacatcaaattaagtttggta |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840949 |
aatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcgtttccgttataatagtccttatgaacatcaaattaagtttggta |
4841048 |
T |
|
| Q |
318 |
tttttcattattcat |
332 |
Q |
| |
|
||||||||||||||| |
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|
| T |
4841049 |
tttttcattattcat |
4841063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 38285828 - 38285691
Alignment:
| Q |
135 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
234 |
Q |
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|
||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
38285828 |
aataccatataatagcactttctataaaaagactaatatagatgtcacgttataatagcacgggtaacggaaatgctattattaatattatagtcaatct |
38285729 |
T |
|
| Q |
235 |
tttcatagcattttctctaaaagtgctattaaattagc |
272 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
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|
| T |
38285728 |
tttcatagcattttttctaaaagtgctattaaattagc |
38285691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 4834278 - 4834331
Alignment:
| Q |
280 |
ttataatagtccttatgaacatcaaa-ttaagtttggtatttttcattattcat |
332 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4834278 |
ttataatagtccttatgaacatcaaaattaagtttggtatttttcattattcat |
4834331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 14361141 - 14361396
Alignment:
| Q |
18 |
caaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacacaccnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |
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|
| T |
14361141 |
caaagatagcccttccccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactcctatcatcacactcctcttt |
14361240 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnnnnaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattatt |
217 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14361241 |
attttatcattttttttaataccatataacagcactttgtataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaaatgctattatt |
14361340 |
T |
|
| Q |
218 |
aatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcg |
273 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14361341 |
aatattagagtcaatcttttgatagcattttctctaaaagtgttattaaattagcg |
14361396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 13069986 - 13070239
Alignment:
| Q |
18 |
caaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacacaccnnnnn |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||| || |
|
|
| T |
13069986 |
caaagatagcccttccccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctattacacccctatcatcacactcctcttt |
13070085 |
T |
|
| Q |
118 |
nnnnnnnnnnnnnnnnnaataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
13070086 |
ttttattattttttt--aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcttgcgtaacggaaatgctattatt |
13070183 |
T |
|
| Q |
218 |
aatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070184 |
aatattagagtcaatcttttcatagcattttctctaaaagtgctattaaattagcg |
13070239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 135 - 273
Target Start/End: Complemental strand, 28157057 - 28156919
Alignment:
| Q |
135 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaagtgctattattaatattagagtcaatct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
28157057 |
aataccatataatagcactttctataaaagggctaatataggtgtcacgttataatagcatgcgtaacggaaatgctattattaatattatagtcaatct |
28156958 |
T |
|
| Q |
235 |
tttcatagcattttctctaaaagtgctattaaattagcg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28156957 |
tttcatagcattttctctaaaagtgctattaaattagcg |
28156919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 28157159 - 28157080
Alignment:
| Q |
18 |
caaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactc |
97 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28157159 |
caaagataaccctttcccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactc |
28157080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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