View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_high_13 (Length: 295)
Name: NF1716_high_13
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 179916 - 180200
Alignment:
| Q |
7 |
cttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgtcaagtcactaccctgct |
106 |
Q |
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| T |
179916 |
cttccaacaccaaatcatatcttattctaaatgcctcaatcacgttcaaattgtctagcaaaaattttcgtgcttggaaacgtcaagtcactaccctgct |
180015 |
T |
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| Q |
107 |
tgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaatagtgtctatgctcccaatcctgaatacaca |
205 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
180016 |
tgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaacggtgtctatgctcccaatcctgaatacaca |
180115 |
T |
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| Q |
206 |
aagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
290 |
Q |
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| T |
180116 |
aagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacaaaggctgacatcatctcctttgcttcctatg |
180200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 1700300 - 1700584
Alignment:
| Q |
7 |
cttccaacaccaaatcatatcttattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgtcaagtcactaccctgct |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1700300 |
cttccaacaccaaatcatctcttattctaaatgcctcaatcacgttcaaactgtctcgcaaaaatttccgtgcttggaaacgtcaagtcactaccctgct |
1700399 |
T |
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| Q |
107 |
tgctggtatcgaagt-atgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaatagtgtctatgctcccaatcctgaatacaca |
205 |
Q |
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| T |
1700400 |
tgctggtatcgaagttatgggtcacatagacggaaccacaccaattcaaacagaaactattatcaacaacggtgtctctgctcccaatcctgattacaca |
1700499 |
T |
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| Q |
206 |
aagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1700500 |
aagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacagcatctcctttgcttcctatg |
1700584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 5399261 - 5399353
Alignment:
| Q |
198 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
290 |
Q |
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|||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||| |||||||| || |||| || || ||||| ||||||| |
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| T |
5399261 |
aatacacaaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatg |
5399353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 3540258 - 3540350
Alignment:
| Q |
198 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
290 |
Q |
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|||||||||| ||||||||| |||| || || ||||||||||||||| |||||| |||||||| || |||| || || ||||| ||||||| |
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| T |
3540258 |
aatacacaaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatg |
3540350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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