View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_high_15 (Length: 270)
Name: NF1716_high_15
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 44298656 - 44298886
Alignment:
| Q |
18 |
caaccacccaaacccattccttcaaagagttgatggaagcaaagtgcagcaatgagaggccttatggtgcaatggttctctgaagcacccaatgacaaac |
117 |
Q |
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| T |
44298656 |
caaccacccaaacccattccttcaaagagttgatggaagcaaagtgcagcaatgagaggccttatggtgcaatggttctctgaagcacccaatgacaaac |
44298755 |
T |
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| Q |
118 |
caatcactacagagtgcaccacaattcctaactccaaaaccttaatccaattccacacaacttacattaattaatataacaacaacatcatcttattaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| |
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| T |
44298756 |
caatcactacagagtgcaccacaattcctaactccaaaaccttaatccaattccacacaacttacattaattaatataacaatgataaaat----ttaac |
44298851 |
T |
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| Q |
218 |
aatacgaaagaaattgattaacctgagccacaaca |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44298852 |
aatacgaaagaaattgattaacctgagccacaaca |
44298886 |
T |
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