View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_high_19 (Length: 239)
Name: NF1716_high_19
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46337368 - 46337147
Alignment:
| Q |
1 |
ctctgataatgagaaaacaagcattgtgacatatatgttagccnnnnnnnggtgcctatagatattgatggcccaacttctatggggtgagaaggcacca |
100 |
Q |
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| T |
46337368 |
ctctgataatgagaaaacaagcattgtgacatatatgttagcctttttttggtgcctatagatattgatggcccaacttctatggggtgagaaggcacca |
46337269 |
T |
|
| Q |
101 |
acactcgtcaattcacgtaccaaagtaccaatgaccttcaacaaggaaactacaaacatttatgaggattgaataagatatgggcttggaagggtcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337268 |
acactcgtcaattcacgtaccaaagtaccaatgaccttcaacaaggaaactacaaacatttatgaggattgaataagatatgggcttggaagggtcctca |
46337169 |
T |
|
| Q |
201 |
caaaattcaaacattcatgtgt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
46337168 |
caaaattcaaacattcatgtgt |
46337147 |
T |
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