View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716_high_4 (Length: 530)

Name: NF1716_high_4
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716_high_4
NF1716_high_4
[»] chr1 (3 HSPs)
chr1 (1-513)||(46337362-46337874)
chr1 (44-95)||(20053948-20053999)
chr1 (47-96)||(50002574-50002623)
[»] chr5 (3 HSPs)
chr5 (51-90)||(30719678-30719717)
chr5 (49-102)||(24182107-24182160)
chr5 (323-363)||(38061702-38061742)
[»] scaffold0065 (1 HSPs)
scaffold0065 (47-97)||(62973-63023)
[»] scaffold0002 (1 HSPs)
scaffold0002 (47-95)||(154532-154580)
[»] chr8 (1 HSPs)
chr8 (47-95)||(21315978-21316026)
[»] chr7 (3 HSPs)
chr7 (47-95)||(2193486-2193534)
chr7 (48-96)||(7646646-7646694)
chr7 (47-95)||(13122372-13122420)
[»] chr4 (1 HSPs)
chr4 (47-95)||(24629298-24629346)
[»] chr3 (1 HSPs)
chr3 (47-95)||(13150422-13150470)


Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 46337874 - 46337362
Alignment:
Q  1 tcatctcagaagtttctcaaaaagtgtgttagtaagaatatggcatgctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagtaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337874 tcatctcagaagtttctcaaaaagtgtgttagtaagaatatggcatgctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagtaatt 46337775  T
Q  101 tggacgttacataaatcacacttgattagttgggaagtttgtttcttacctnnnnnnntgtaggccttgggattagaagtcaacattaaatgaatgaact 200  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||| ||| |||||||||||||    
T  46337774 tgggcgttacataaatcacacttgattaattgggaagtttgtttcttacctaaaaaaatgtaggccttgggattagaagtcatcatcaaatgaatgaact 46337675  T
Q  201 tgtccaaatgtaaatgctttggaatataatcaaaagacatgatgatctcttttaccctacctgtacaatacatatgttaaaaataatgatttgcatgtta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337674 tgtccaaatgtaaatgctttggaatataatcaaaagacatgatgatctcttttaccctacctgtacaatacatatgttaaaaataatgatttgcatgtta 46337575  T
Q  301 aattaaaatcaactcttaactctatgactctcctttatggaaagatttaacaagtatttgggatcagtttcaaaatcatattgtgtagcagttgtgatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337574 aattaaaatcaactcttaactctatgactctcctttatggaaagatttaacaagtatttgggatcagtttcaaaatcatattgtgtagcagttgtgatat 46337475  T
Q  401 ttgaatcatattagcttttggatggttaagtggaatccttgtagagcttctctcatgttaacttatattcgaccttcgattgataatgccctaattatta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46337474 ttgaatcatattagcttttggatggttaagtggaatccttgtagagcttctctcatgttaacttatattcgaccttcgattgataataccctaattatta 46337375  T
Q  501 tggacactctgat 513  Q
    |||||||||||||    
T  46337374 tggacactctgat 46337362  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 20053999 - 20053948
Alignment:
Q  44 catgctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    |||||||||||||||||| ||  |||||||||| | ||||||||||||||||    
T  20053999 catgctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaag 20053948  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 50002623 - 50002574
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagt 96  Q
    ||||||||||||||| ||  |||||||||| | |||||||||||||||||    
T  50002623 gctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaagt 50002574  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 30719717 - 30719678
Alignment:
Q  51 aaaagactcgtattaatttgtggggttaatcgacaatcct 90  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  30719717 aaaagactcgtattaatttgtggggtcaatcgccaatcct 30719678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 24182160 - 24182107
Alignment:
Q  49 tgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagtaatttg 102  Q
    |||||||| |||| ||  |||||||||||| ||||||||||||||||| |||||    
T  24182160 tgaaaagattcgtgttggtttgtggggttagtcgacaatcctgaaagtcatttg 24182107  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 38061702 - 38061742
Alignment:
Q  323 tatgactctcctttatggaaagatttaacaagtatttggga 363  Q
    ||||| |||||||||||||||| ||||||| ||||||||||    
T  38061702 tatgattctcctttatggaaagctttaacatgtatttggga 38061742  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 63023 - 62973
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagta 97  Q
    ||||||||||||||||||  |||||||||| | ||| ||||||||||||||    
T  63023 gctgaaaagactcgtattggtttgtggggtcagtcggcaatcctgaaagta 62973  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 154532 - 154580
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    ||||||||||||||| || ||||||||||| | |||||||| |||||||    
T  154532 gctgaaaagactcgtgttgatttgtggggtcagtcgacaatgctgaaag 154580  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 21316026 - 21315978
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    ||||||||||||||| ||  |||||||||| ||||||||||||| ||||    
T  21316026 gctgaaaagactcgtgttggtttgtggggtcaatcgacaatcctaaaag 21315978  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 2193486 - 2193534
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    ||||||||||||||| || ||||||||||| | ||| ||||||||||||    
T  2193486 gctgaaaagactcgtgttgatttgtggggtcagtcggcaatcctgaaag 2193534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 7646646 - 7646694
Alignment:
Q  48 ctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagt 96  Q
    |||||||||||||| ||  |||||||||||| ||||||||||| |||||    
T  7646646 ctgaaaagactcgtgttggtttgtggggttagtcgacaatcctaaaagt 7646694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13122420 - 13122372
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    ||||||||||||||| ||  |||||||||| ||||| ||||||||||||    
T  13122420 gctgaaaagactcgtgttggtttgtggggtcaatcggcaatcctgaaag 13122372  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 24629346 - 24629298
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    ||||||||||||||| ||| |||||||||| | ||| ||||||||||||    
T  24629346 gctgaaaagactcgtgttagtttgtggggtcagtcggcaatcctgaaag 24629298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13150470 - 13150422
Alignment:
Q  47 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 95  Q
    ||||||||||||||| || ||||||||||| | |||||||| |||||||    
T  13150470 gctgaaaagactcgtgttgatttgtggggtcagtcgacaatgctgaaag 13150422  T

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