View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_low_11 (Length: 339)
Name: NF1716_low_11
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 981373 - 981225
Alignment:
| Q |
1 |
tggaagtataaccttagaacaaaatatcttgtatcaaaaaagcttgaggaggagttacttcaaaatactcctcctgatgtggataatgtccagtggtcaa |
100 |
Q |
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| T |
981373 |
tggaagtataaccttagaacaaaataccttgcattaaaaaagcttaaggaggagttacttcaaaatactcctcctgatgtagataatgtccagtggtcaa |
981274 |
T |
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| Q |
101 |
aatttattgatcactaccaaagtgatagaatgaaggtattgcattacaa |
149 |
Q |
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| T |
981273 |
attttattgatcactaccaaagtgatagaatgaaggtatcacattacaa |
981225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 179 - 339
Target Start/End: Complemental strand, 981183 - 981023
Alignment:
| Q |
179 |
tatattgtgcattttctaaaaagtttaataggctgtgactaatttgttttctttgagaaatataggaaatatgtgnnnnnnntattgtgaaacgtaaaaa |
278 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| |
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| T |
981183 |
tatattgtgcattttctagaaagtttaataggctatgactaatttgttttctttgagaaatataagaaacaagtgaaaaaaatattgtgaaacgtaaaaa |
981084 |
T |
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| Q |
279 |
acttcagatcaaccacactggtggtactaagagcaaccaaaggagggcgtacgaaatggtt |
339 |
Q |
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| T |
981083 |
gcttcagatcaaccacactgatggtactaagagcaaccaaaggagggcatacgaaatggtt |
981023 |
T |
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