View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716_low_12 (Length: 327)

Name: NF1716_low_12
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716_low_12
NF1716_low_12
[»] chr7 (4 HSPs)
chr7 (11-311)||(2476011-2476313)
chr7 (22-178)||(26572326-26572483)
chr7 (118-178)||(45957085-45957145)
chr7 (35-167)||(984604-984736)
[»] chr1 (3 HSPs)
chr1 (31-309)||(15244635-15244914)
chr1 (19-309)||(47899781-47900074)
chr1 (118-173)||(6243090-6243145)
[»] chr4 (4 HSPs)
chr4 (86-238)||(12109523-12109675)
chr4 (40-173)||(7354520-7354653)
chr4 (40-178)||(40088232-40088370)
chr4 (118-175)||(7354391-7354448)
[»] chr3 (1 HSPs)
chr3 (31-178)||(862821-862968)
[»] chr8 (2 HSPs)
chr8 (118-165)||(19452190-19452236)
chr8 (118-165)||(19528840-19528886)
[»] chr6 (1 HSPs)
chr6 (31-178)||(14275094-14275241)
[»] chr2 (1 HSPs)
chr2 (136-311)||(27466778-27466956)
[»] chr5 (2 HSPs)
chr5 (141-178)||(16511559-16511596)
chr5 (97-178)||(17469301-17469382)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 2476313 - 2476011
Alignment:
Q  11 cagagatcgaaa-gggtatga-aatggaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcac 108  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||    
T  2476313 cagagatcgaaaagggtatgagaatggaaaatgtttgtttgatatgagttacgtcgctatgtactgaaagatgatgggaacaagagagattgttttgcac 2476214  T
Q  109 aagtgataaatcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaaggcttagcgtgtactacttaagtgaaaaacgttg 208  Q
    |||||||| ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||| ||| | ||| ||||    
T  2476213 aagtgatacatcttggaagagcctagaagcgctgtaatctaattaggactcttgtcataagcaaaaggcttagcaggtactacttcagtaataaatgttg 2476114  T
Q  209 atgatctaaccttacaatgttatgtgttaatatcatgctactgtactgaaatgacgtcttcatgtgcttcacatgaaggctgagtgaaatacatcctagt 308  Q
    ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  2476113 atgatctaaccttacaatgttatgtgttaatattatgcgaccgtactgaaatgacgtcttcatgtgcttaacatgaaggctgagtgaaatacattctagt 2476014  T
Q  309 gac 311  Q
    |||    
T  2476013 gac 2476011  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 26572483 - 26572326
Alignment:
Q  22 agggtatga-aatggaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatc 120  Q
    ||||||||| |||| |||||||||| ||||||||||||| ||| ||||| || ||||| | |||| |||||| |||| |  ||||||| ||   || ||     
T  26572483 agggtatgagaatgaaaaatgtttgtttgatatgagttaagtccctatgaaccgaaaggtgatggtaacaagagagactaatttgcacgaggactagata 26572384  T
Q  121 ttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||| | ||||||||||    
T  26572383 ttggaagagcctgaaagtgctgagatctaactaggactcttgtcacaggcaaaaggct 26572326  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 45957085 - 45957145
Alignment:
Q  118 atcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||| || |||||||    
T  45957085 atcttggaagagcctggaagcgttgagatctaaccaggactcttgtcatatgccaaaggct 45957145  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 984604 - 984736
Alignment:
Q  35 gaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatcttggaagagcctgg 134  Q
    ||||||||||| ||||||||||||| ||| ||||| ||  |||| | |||||||  || |||| | |||||||| |||  || |||||| |  | ||||     
T  984604 gaaaatgtttgtttgatatgagttacgtccctatgaaccaaaagttgatgggaatgagagagactattttgcacgagtattatatcttgaagaatcctga 984703  T
Q  135 aagcgctgagatctaattaggactcttgtcata 167  Q
    |||||||||||||||| || | |||||| ||||    
T  984704 aagcgctgagatctaactaaggctcttgccata 984736  T

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Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 309
Target Start/End: Original strand, 15244635 - 15244914
Alignment:
Q  31 aatggaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatcttggaagagc 130  Q
    ||||||||||||||| ||||||||||||| ||| || ||||||||||| | | ||||||||| |||| ||||||| ||||||  || |||||||||||      
T  15244635 aatggaaaatgtttgtttgatatgagttacgtccctgtgtactgaaaggtgacgggaacaagagagactgttttgtacaagtactagatcttggaagaat 15244734  T
Q  131 ctggaagcgctgagatctaattaggactcttgtcataagcaaaaggcttagcgtgtactacttaagtgaaaaacgttgatgatctaaccttacaatgtta 230  Q
    ||||||| | |||||||||| |||||||||||||||| | |||||||| | | ||||||||||  ||| |||| |||| ||| |||||||  ||||| |     
T  15244735 ctggaagtgttgagatctaactaggactcttgtcataggaaaaaggctcaacatgtactacttcggtggaaaatgttgctgacctaacctagcaatg-tg 15244833  T
Q  231 tgtgttaatatcatgctactgta--ctgaaatgacgtcttcatgtgcttcacatgaaggctgagtgaaatacatcctagtg 309  Q
    |||||||| || |||  | ||||  |||| | ||| ||||||||||||| ||||||||| || |||||| || ||||||||    
T  15244834 tgtgttaagattatgtgattgtactctgagaagacatcttcatgtgcttaacatgaaggatgggtgaaacacctcctagtg 15244914  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 47900074 - 47899781
Alignment:
Q  19 gaaagggtatga-aatggaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataa 117  Q
    ||||| |||||| |||||||| | |||| | |||| |||||| |||  |||| |||||||| | ||||||||||| |||| | |||||||  ||   ||     
T  47900074 gaaagagtatgagaatggaaattttttgttagatacgagttatgtccttatgaactgaaaggtgatgggaacaagagagactattttgcatgagcattat 47899975  T
Q  118 atcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaaggcttagcgtgtactacttaagtgaaaaacgttgatgatctaa 217  Q
    ||||||||||||  ||| ||| ||||||||||| ||||||||||||||||   |||| ||| | | ||||||||||  ||| |||| |||||||| ||||    
T  47899974 atcttggaagaggttgggagctctgagatctaactaggactcttgtcatagaaaaaatgctcaacatgtactacttcggtggaaaatgttgatgacctaa 47899875  T
Q  218 ccttacaatgttatgtgttaatatcatgctactgtactgaaat--gacgtcttcatgtgcttcacatgaaggctgagtgaaatacatcctagtg 309  Q
    |||  ||||||||| |||||| || | |  | |||||| ||||  ||| |||||| |||||| |||| |||| || |||||| || ||||||||    
T  47899874 cctagcaatgttatatgttaagattaggtgattgtactcaaataagacttcttcacgtgcttaacataaaggttgggtgaaacacctcctagtg 47899781  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 6243090 - 6243145
Alignment:
Q  118 atcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaa 173  Q
    |||||||||||| ||| |||| || |||||||| |||||||||||||||| |||||    
T  6243090 atcttggaagagtctgaaagcactaagatctaactaggactcttgtcatatgcaaa 6243145  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 12109675 - 12109523
Alignment:
Q  86 gaacaagggagattgttttgcacaagtgataaatcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaaggcttagcgtg 185  Q
    ||||||| ||||||||||||||| |||  |  ||||| |||||||||  ||||| |||||||||| |||||||||||||||| |||||||||| | | ||    
T  12109675 gaacaagagagattgttttgcacgagtacttgatcttagaagagcctataagcgttgagatctaactaggactcttgtcataggcaaaaggctcaacatg 12109576  T
Q  186 tactacttaagtgaaaaacgttgatgatctaaccttacaatgttatgtgttaa 238  Q
    |||| |||  ||| |||| | |||||| |||||||  |||||||  |||||||    
T  12109575 tactgcttcggtggaaaatggtgatgacctaacctaccaatgttgcgtgttaa 12109523  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 7354653 - 7354520
Alignment:
Q  40 tgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatcttggaagagcctggaagcg 139  Q
    |||||| || |||||||||| ||| ||| |||  || |||| | | ||||||| |||||||||||| ||||    || || ||| |||||| |||||| |    
T  7354653 tgtttgttttatatgagttacgtccctaagtatcgagagatgacgagaacaagagagattgttttgaacaaaaactagatattgaaagagcttggaagtg 7354554  T
Q  140 ctgagatctaattaggactcttgtcataagcaaa 173  Q
     | ||||||||||||||||||||||||| |||||    
T  7354553 gtaagatctaattaggactcttgtcataggcaaa 7354520  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 40088370 - 40088232
Alignment:
Q  40 tgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatcttggaagagcctgg-aagc 138  Q
    |||||| || ||||||||||| || ||||| ||| |||| | | |||||||||||||| |  ||||||  |||  || |||||||| ||||||   ||||    
T  40088370 tgtttgtttaatatgagttag-tctctatgcactaaaaggtgaagggaacaagggagactactttgcatgagtactagatcttggaggagccttttaagc 40088272  T
Q  139 gctgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    | |||||||||| |||||||||||||||| || |||||||    
T  40088271 gttgagatctaactaggactcttgtcataggccaaaggct 40088232  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 7354448 - 7354391
Alignment:
Q  118 atcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaag 175  Q
    ||||||||||||  |||||||| | |||||||| || ||||||||||||| |||||||    
T  7354448 atcttggaagagtttggaagcggtaagatctaactaagactcttgtcataggcaaaag 7354391  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 862821 - 862968
Alignment:
Q  31 aatggaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatcttggaagagc 130  Q
    ||||||||||||||| ||||||||||||| ||  ||||| || ||||| | ||| ||| ||  ||| ||  ||||||| |||  || |||||||| ||||    
T  862821 aatggaaaatgtttgtttgatatgagttacgttcctatgaaccgaaaggtgatgagaaaaaaagaggttactttgcacgagtactagatcttggaggagc 862920  T
Q  131 ctggaagcgctgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    ||||||||||| ||||| || |||||||||||| ||| ||||||||||    
T  862921 ctggaagcgctaagatccaactaggactcttgtgataggcaaaaggct 862968  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 19452236 - 19452190
Alignment:
Q  118 atcttggaagagcctggaagcgctgagatctaattaggactcttgtca 165  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  19452236 atcttggaagagtctg-aagcgctgagatctaattaggactcttgtca 19452190  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 19528840 - 19528886
Alignment:
Q  118 atcttggaagagcctggaagcgctgagatctaattaggactcttgtca 165  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  19528840 atcttggaagagtctg-aagcgctgagatctaattaggactcttgtca 19528886  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 14275094 - 14275241
Alignment:
Q  31 aatggaaaatgtttgattgatatgagttaggtcgctatgtactgaaagattatgggaacaagggagattgttttgcacaagtgataaatcttggaagagc 130  Q
    |||| |||||||||| |||||| |||||| ||| ||||||| | |||  | | ||||||||| | || | |||||||| |||  || |||||||| || |    
T  14275094 aatgaaaaatgtttgtttgataagagttacgtccctatgtattaaaaagtgacgggaacaagagcgactattttgcacgagtactagatcttggaggaac 14275193  T
Q  131 ctggaagcgctgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    || |||||||| |||||||| | | ||||||||||||  |||||||||    
T  14275194 ctagaagcgctaagatctaacttgcactcttgtcatagacaaaaggct 14275241  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 311
Target Start/End: Complemental strand, 27466956 - 27466778
Alignment:
Q  136 agcgctgagatctaattaggactcttgtcataagcaaaaggcttagcgt-gtactacttaagtgaaaaacgttgatgatctaaccttacaatgttatgtg 234  Q
    |||| |||||||||| |||||||||||||||| |||||| ||| ||| | ||| |||||  ||   ||  ||||||||||||||||  |||||||  |||    
T  27466956 agcgttgagatctaactaggactcttgtcatatgcaaaaagctcagcatagtattacttcggttcgaactgttgatgatctaacctagcaatgttgcgtg 27466857  T
Q  235 ttaatatcatgctactgtact--gaaatgacgtcttcatgtgcttcacatgaaggctgagtgaaatacatcctagtgac 311  Q
    |||| || |||   |||||||  || | ||| |||||| ||| || ||||||||||||||||||| || ||||||||||    
T  27466856 ttaagattatgtgtctgtactccgagaggacatcttcacgtgtttaacatgaaggctgagtgaaacacctcctagtgac 27466778  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 16511559 - 16511596
Alignment:
Q  141 tgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    ||||||||||||||||||||||||||| || |||||||    
T  16511559 tgagatctaattaggactcttgtcataggccaaaggct 16511596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 17469301 - 17469382
Alignment:
Q  97 attgttttgcacaagtgataaatcttggaagagcctggaagcgctgagatctaattaggactcttgtcataagcaaaaggct 178  Q
    |||||||||||  |||  || ||||||| ||||| ||||||| || |||||||| |||||||||| ||||| | ||||||||    
T  17469301 attgttttgcatgagtactagatcttgggagagcttggaagcactaagatctaactaggactcttttcataggaaaaaggct 17469382  T

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