View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_low_14 (Length: 271)
Name: NF1716_low_14
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 19587267 - 19587019
Alignment:
| Q |
11 |
taattctccaaagtccaaattgcaaaagagttc-agcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaat |
109 |
Q |
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| T |
19587267 |
taatactccaaagtccaaattgcaaaagagttccagcttcacataaatatatttgggcacctgaaacaagaatcaaactattgcatatgagtactttaat |
19587168 |
T |
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| Q |
110 |
taaaatagtatata--ctaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatgcatgg |
207 |
Q |
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| T |
19587167 |
taaaatagtatatatactaattaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataatgtaaatttcaagaactcatgcatgg |
19587068 |
T |
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| Q |
208 |
agattaattaaactttaactatcaccttaataacatgaaattaaattct |
256 |
Q |
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| T |
19587067 |
agattaattaaactttaactatcaccttaataacatgaaattaaattct |
19587019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 19582207 - 19582396
Alignment:
| Q |
43 |
cagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaacactgc |
142 |
Q |
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| T |
19582207 |
cagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaacactga |
19582293 |
T |
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| Q |
143 |
at---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataact----catgcatggagattaattaaactttaactatcacctt |
235 |
Q |
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| T |
19582294 |
ataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactatcacctt |
19582393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 19591378 - 19591189
Alignment:
| Q |
43 |
cagcttcacataaatatatttgggcacctgaaacaagaatcatactattgcatatgagtactttaattaaaatagtatatactaatgaatgaaacactgc |
142 |
Q |
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| T |
19591378 |
cagcttcacacaaatatatttggggacctgaaacaagaatcataatattt-----------tttaattaaaatagcata--ctaatgaatgaaacactga |
19591292 |
T |
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| Q |
143 |
at---gagttaatattctttgtaaccaatttgattccaataatgtaaatttcaataactcatg----catggagattaattaaactttaactatcacctt |
235 |
Q |
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| T |
19591291 |
ataatgagttaatattctttgttaccaatttgatcccaataacgtaaatttcaataactcatgcatgcatggagattaattaaactttaactatcacctt |
19591192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 20789423 - 20789355
Alignment:
| Q |
122 |
tactaatgaatgaaacactgcatgagttaatattctttgtaaccaatttgattccaataatgtaaattt |
190 |
Q |
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| T |
20789423 |
tactaataaatgaaacactgcatgagttaatattctttgtaaccaatttgatcccaataacgtaaattt |
20789355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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