View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_low_16 (Length: 256)
Name: NF1716_low_16
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 19586413 - 19586661
Alignment:
| Q |
1 |
cccctcagccgcagccgcaagaatcagaacccaagtcatttgatgaaatagaagattctcaagcacagtcatggtttcaagatatatttcctggtaaaga |
100 |
Q |
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| T |
19586413 |
cccctcagccgcagccgcaagaatcagaacccaagtcatttgatgaaatagaagattctcaagcacagtcatggtttcaagatatatttcctggtaaaga |
19586512 |
T |
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| Q |
101 |
ttttccaccatgtcttcaaccgcagcaagaaatttatcaagattcttccaaacttccacaactcaaagaaggtcgtaagggaaaacctctaccatggcat |
200 |
Q |
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| T |
19586513 |
ttttccaccatgtcttcaaccgcagcaagaaaattatcaagattcttccaaacttccacaactcgaagaaggtcgtaagggaaaacctcgaccatggcat |
19586612 |
T |
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| Q |
201 |
gagtcaccagaacgattaatatttcttcaattatatcctaattttgctt |
249 |
Q |
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| T |
19586613 |
gagtcaccagaacgattaatatttcttcaattatatcctaattttgctt |
19586661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 19579954 - 19579864
Alignment:
| Q |
4 |
ctcagccgcagccgcaagaatcagaacccaagtcatttgatgaaatagaagattctcaagcacagtcatggtttcaagatatatttcctggt |
95 |
Q |
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| T |
19579954 |
ctcagccgcagccgcaagaatcagaacccaattcttttgatgaaataaaagattctcaa-cacagtcatggtttcaagaaatatttcctggt |
19579864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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