View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1716_low_17 (Length: 246)
Name: NF1716_low_17
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 722941 - 723166
Alignment:
| Q |
1 |
tttacttatcatctcaatgcacataaggaaggccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaatagttgtcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
722941 |
tttacttatcatctcaatgcacataaggaaggccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaatagttgtcga |
723040 |
T |
|
| Q |
101 |
tcaatgttgtgaaacaagttgaactcttctttagtcacaatcactttgaaacctaggtctggatttggtagaatttgtggtatagtagaagacattggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
723041 |
tcaatgttgtgaaacaagttgaactcttctttagtcacaatcactttgaaacctaggtctggatttggtagaatttgtggtatagtagaagacattggta |
723140 |
T |
|
| Q |
201 |
attagatgattgtggtggtggtagtg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
723141 |
attagatgattgtggtggtggtagtg |
723166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 17616233 - 17616083
Alignment:
| Q |
32 |
gccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaatagttgtcgatcaatgttgtgaaacaagttgaactcttctt |
131 |
Q |
| |
|
||||||||| | || |||||| ||||||||||||| || ||| |||||| |||| ||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17616233 |
gccattacacttattgattcaaagatttcacgacctagtcccacaaccaatcgaaggaactactgtcgatcaatgttgtgaaataagttgaactcttctt |
17616134 |
T |
|
| Q |
132 |
tagtcacaatcactttgaaacctaggtctggatttggtagaatttgtggta |
182 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||| ||||||| |||||| |
|
|
| T |
17616133 |
gagtcagaatcactttggaacctaggttatgatttgttagaattagtggta |
17616083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 18331606 - 18331730
Alignment:
| Q |
20 |
cacataaggaaggccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaatagttgtcgatcaatgttgtgaaacaagt |
119 |
Q |
| |
|
||||| ||||||||||||||||| || || | |||||| |||||| | ||| | | | ||||||| |||| ||||||||||||| ||| |||||||| |
|
|
| T |
18331606 |
cacatgaggaaggccattacatttattgactgagagatctcacgatcaagcgcgaccagcaaacgagtgaagagttgtcgatcaacactgtaaaacaagt |
18331705 |
T |
|
| Q |
120 |
tgaactcttctttagtcacaatcac |
144 |
Q |
| |
|
| || |||||||| ||||||||||| |
|
|
| T |
18331706 |
taaattcttctttggtcacaatcac |
18331730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University