View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_low_18 (Length: 243)
Name: NF1716_low_18
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 8240266 - 8240428
Alignment:
| Q |
35 |
ccctccaaatctctgagctttttgaatccggtggtaaacactccctaagcatatcatggagaggatttggagaaggttggtatttatttgtaacctcaat |
134 |
Q |
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| T |
8240266 |
ccctccaaatctctgagctttttgaatccggtggtaaacactccctaagcatatcatggagaggatttggagaaggttggtatttatttgtaacctcaat |
8240365 |
T |
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| Q |
135 |
attttatttgtaatgttttttgttggataggacaagcaaacctatttatattattgactatta |
197 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
8240366 |
attttatttgtattgttttttgttggataggacaagcaaacctatttatactgttgactatta |
8240428 |
T |
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