View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716_low_5 (Length: 497)

Name: NF1716_low_5
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716_low_5
NF1716_low_5
[»] chr4 (20 HSPs)
chr4 (17-485)||(12717833-12718304)
chr4 (215-449)||(11197106-11197336)
chr4 (218-450)||(10396305-10396527)
chr4 (162-390)||(34946214-34946440)
chr4 (17-112)||(12714364-12714458)
chr4 (215-411)||(47680494-47680695)
chr4 (270-361)||(2917272-2917363)
chr4 (254-354)||(47680831-47680932)
chr4 (240-381)||(47681061-47681205)
chr4 (17-71)||(12694140-12694194)
chr4 (215-393)||(11307390-11307566)
chr4 (325-393)||(48635145-48635213)
chr4 (326-393)||(53468097-53468164)
chr4 (325-401)||(11196922-11196998)
chr4 (276-376)||(11307696-11307796)
chr4 (30-66)||(12698289-12698325)
chr4 (17-52)||(12690676-12690711)
chr4 (324-413)||(10396120-10396207)
chr4 (271-345)||(32864613-32864687)
chr4 (331-376)||(16559303-16559348)
[»] chr7 (11 HSPs)
chr7 (215-449)||(21416189-21416419)
chr7 (215-446)||(27597863-27598092)
chr7 (215-303)||(23568901-23568990)
chr7 (239-393)||(23578104-23578258)
chr7 (256-368)||(8802413-8802526)
chr7 (263-361)||(11776196-11776294)
chr7 (332-393)||(2463442-2463503)
chr7 (326-361)||(21416563-21416598)
chr7 (335-393)||(11776447-11776505)
chr7 (331-393)||(27597696-27597757)
chr7 (291-371)||(2463112-2463193)
[»] chr3 (11 HSPs)
chr3 (226-412)||(16143327-16143513)
chr3 (213-411)||(40195904-40196101)
chr3 (263-354)||(16869651-16869744)
chr3 (272-393)||(43978675-43978796)
chr3 (254-342)||(32201242-32201330)
chr3 (240-354)||(32200943-32201058)
chr3 (257-381)||(23162107-23162231)
chr3 (263-375)||(54017666-54017779)
chr3 (325-449)||(53595950-53596070)
chr3 (325-449)||(53596265-53596385)
chr3 (333-413)||(16871041-16871119)
[»] chr6 (5 HSPs)
chr6 (215-393)||(7301400-7301579)
chr6 (215-413)||(11637803-11638000)
chr6 (333-449)||(21130105-21130217)
chr6 (333-413)||(22605337-22605415)
chr6 (257-329)||(15092272-15092344)
[»] chr5 (12 HSPs)
chr5 (217-443)||(13112875-13113096)
chr5 (217-443)||(13042879-13043100)
chr5 (215-449)||(13112418-13112647)
chr5 (212-385)||(36389102-36389272)
chr5 (236-413)||(13042441-13042615)
chr5 (256-412)||(14168854-14169009)
chr5 (295-401)||(13042672-13042776)
chr5 (295-401)||(13112670-13112774)
chr5 (256-361)||(41341376-41341482)
chr5 (333-376)||(34103552-34103595)
chr5 (332-447)||(13112245-13112356)
chr5 (331-376)||(33036258-33036303)
[»] chr1 (7 HSPs)
chr1 (215-372)||(34665930-34666088)
chr1 (243-376)||(31973452-31973585)
chr1 (218-314)||(47159161-47159258)
chr1 (324-393)||(12466272-12466341)
chr1 (333-393)||(25294887-25294947)
chr1 (332-411)||(27686608-27686685)
chr1 (270-352)||(43834430-43834512)
[»] chr8 (6 HSPs)
chr8 (215-298)||(3671046-3671129)
chr8 (256-393)||(5981542-5981680)
chr8 (243-411)||(2954309-2954475)
chr8 (244-344)||(23753048-23753147)
chr8 (333-413)||(5981815-5981893)
chr8 (333-382)||(12156769-12156818)
[»] chr2 (8 HSPs)
chr2 (215-413)||(28226537-28226731)
chr2 (215-279)||(13792227-13792292)
chr2 (270-381)||(11727758-11727869)
chr2 (325-449)||(28226327-28226447)
chr2 (217-279)||(13792417-13792481)
chr2 (215-344)||(35414293-35414420)
chr2 (270-345)||(44981910-44981986)
chr2 (323-393)||(13792594-13792664)
[»] scaffold0548 (1 HSPs)
scaffold0548 (276-376)||(4186-4286)
[»] scaffold0160 (1 HSPs)
scaffold0160 (337-411)||(27532-27604)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 12718304 - 12717833
Alignment:
Q  17 aaatgaaactcatataccccacgtcaattacaacttgagagatgattttaacatcttatatatctgcaaaaaattaatatcttctataattctctattct 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  12718304 aaatgaaactcata--ccccacgtcaattacaacttgagagatgattttaacatcgtatatatccgcacaaaattaatatcttctataattctctattct 12718207  T
Q  117 tttccggttttgaaagtattctagctgttagaatatctcctgtaat-ctcttagttggttctagacgtttagctcagtgccgttctaagcgcttttagtc 215  Q
    ||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||| ||||| | |||||||| ||||||    
T  12718206 tttccggttttgaaagtattctagcggttagaatatcttctataattctcttagttggttctagacgtttagctcattgccgctttaagcgctcttagtc 12718107  T
Q  216 tccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttg 315  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12718106 tccccaataaattggtattagagcctagttaggcttgctgggggagtgggagcaggatcctagtatggatcatcctagtgatgtgggttagtcacacttg 12718007  T
Q  316 aggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaa 415  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||    
T  12718006 aggaggaaattgttagaaatcaagtgtgagagataatgttccacattgattagaaatggagcaaacgttgaatatatata--agaggaaacctataaaaa 12717909  T
Q  416 tccataattttagggttttgggtaagagtgtggtca--------acttttaacaggtcctagatgtataaccctttgc 485  Q
    | |  | | |||||||||||||||||||||||||||         ||||| |||||||||||||||||||||| ||||    
T  12717908 ttc--agtcttagggttttgggtaagagtgtggtcatgtctctctcttttgacaggtcctagatgtataacccattgc 12717833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 449
Target Start/End: Original strand, 11197106 - 11197336
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 314  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||    
T  11197106 ctcccaaacaaactggtatcagagcctagttaggcttgctgggggagtgggagcgggatcctggtgtggatcatcctagtgatgtgggtgagtaacactt 11197205  T
Q  315 gaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaa 414  Q
    ||   | | ||||||| ||| |||||||||| |||||||   ||||| || ||||||||||| |||| |||   ||||||||||||||| ||||||  ||    
T  11197206 gattgggagattgttaaaaaccaagtgtgagtgattatgcctcacatcgactagaaatggaggaaacgttg--gatatataagagaggagacccat--aa 11197301  T
Q  415 atccataattttagggttttgggtaagagtgtggt 449  Q
    | ||||    |||||||||||||||||||||||||    
T  11197302 acccattgccttagggttttgggtaagagtgtggt 11197336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 218 - 450
Target Start/End: Original strand, 10396305 - 10396527
Alignment:
Q  218 cccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgag 317  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||||  ||||| |||||||    
T  10396305 cccaacaaactggcattagagcctagttaggctttctgggggagtggga------tcctagtgtggatcatcctagtgatgtgggcgagtcatacttgag 10396398  T
Q  318 gagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatc 417  Q
    | | | |||||| ||||||||||||||| ||||||||  || ||||| ||||||||||| |||  |||   ||||||||||||||| ||||||  ||| |    
T  10396399 ggggagattgttggaaatcaagtgtgagtgattatgtctcatattgactagaaatggaggaaatgttg--gatatataagagaggagacccat--aaacc 10396494  T
Q  418 cataattttagggttttgggtaagagtgtggtc 450  Q
    |||    |||||||||||| |||||||||||||    
T  10396495 cattgccttagggttttggataagagtgtggtc 10396527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 162 - 390
Target Start/End: Complemental strand, 34946440 - 34946214
Alignment:
Q  162 tctcttagttggttctagacgtttagctcagtgccgttctaagcgcttt-tagtctccccaacaaactggtattagagtctagttaggcttgctggggga 260  Q
    ||||||||| ||| |||||||||||||  | ||||| || ||||||||  ||| |||||||||||   ||||| |||| || |||||| |||||||||||    
T  34946440 tctcttagtgggtcctagacgtttagcctattgccgctccaagcgcttcgtagactccccaacaa---ggtatcagagcctggttaggtttgctggggga 34946344  T
Q  261 gtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccaca 360  Q
    ||||||   ||||| |||| ||||||||||||||||||||||| |||||||||||||  | | |||||| ||||||||||||||| ||| |||| |||||    
T  34946343 gtgggactgggatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttggaaatcaagtgtgagtgataatgtcccaca 34946244  T
Q  361 ttgattagaaatggagcaaacattgaatat 390  Q
    |  | | |||||||||||||| ||||||||    
T  34946243 tcaacttgaaatggagcaaacgttgaatat 34946214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 12714458 - 12714364
Alignment:
Q  17 aaatgaaactcatataccccacgtcaattacaacttgagagatgattttaacatcttatatatctgcaaaaaattaatatcttctataattctcta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||| |  |||||||||    
T  12714458 aaatgaaactcatataccccacgtcaattacaacttgagagatgattttaacatcgtatatatccacaaaaaa-taatatcttttgcaattctcta 12714364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 411
Target Start/End: Original strand, 47680494 - 47680695
Alignment:
Q  215 ctccccaacaaactggtattagagtc-tagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagt------gatgtgggttagt 307  Q
    ||||||||||| ||| |||||||| | ||||||||||   ||| |||| ||||| |||||||||||| ||||||| |||||      ||| ||||| | |    
T  47680494 ctccccaacaa-ctgatattagagccctagttaggctcagtggtggagcgggagtaggatcctagtgaggatcatgctagtactagtgatatgggtgact 47680592  T
Q  308 cacacttgaggagaaaattgttagaaa-tcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaac 406  Q
    ||||||||||| ||| |||||| |||| | ||||||||| |||||||| |||||| ||||| |||||||| |||||||||||||||||  ||||||| ||    
T  47680593 cacacttgaggggaagattgttggaaaattaagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaatatatat--gagaggagac 47680690  T
Q  407 ccata 411  Q
    |||||    
T  47680691 ccata 47680695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 2917363 - 2917272
Alignment:
Q  270 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacat 361  Q
    |||||| ||||||||| | ||||||||||||||| |||||||||||||| ||| |||||| ||||||||  ||||| ||| |||| ||||||    
T  2917363 ggatccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttggaaatcaatcgtgagtgataatgtcccacat 2917272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 47680831 - 47680932
Alignment:
Q  254 tgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattat 352  Q
    |||||||| |||||  ||||||||||| ||||||  |||||||||||||| | |||||||||||| | | ||||||  ||||||||||||||| ||||||    
T  47680831 tgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacacttgagggggagattgttgggaaatcaagtgtgagtgattat 47680930  T
Q  353 gt 354  Q
    ||    
T  47680931 gt 47680932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 381
Target Start/End: Original strand, 47681061 - 47681205
Alignment:
Q  240 ctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagt--cacacttgaggagaaaattgtt-agaaatc 336  Q
    |||||||||||   |||||||| |||||  ||||||||||| ||||||  |||||||||||||| | |  ||||||||||| | | ||||||  |||||     
T  47681061 ctagttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactaacacacttgagggggagattgttgggaaata 47681160  T
Q  337 aagtgtgagagattatgttccacattgattagaaatggagcaaac 381  Q
    ||||||||| |||||||| || ||| |||||||||||||| ||||    
T  47681161 aagtgtgagtgattatgtcccgcatcgattagaaatggaggaaac 47681205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 12694194 - 12694140
Alignment:
Q  17 aaatgaaactcatataccccacgtcaattacaacttgagagatgattttaacatc 71  Q
    ||||||||||||||||||| |||| |||||||||||||||||| | |||||||||    
T  12694194 aaatgaaactcatataccctacgttaattacaacttgagagataactttaacatc 12694140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 11307566 - 11307390
Alignment:
Q  215 ctccccaacaaactggtattagag-tctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacact 313  Q
    ||||||||||||||||||| | || ||| |||||||||| |||||| | |||||  || |||||||||||||||  ||||||||||| || | |||| |     
T  11307566 ctccccaacaaactggtatcatagctctggttaggcttgatgggggtgcgggagtgggttcctagtgtggatcaggctagtgatgtgtgtgattcactcg 11307467  T
Q  314 tgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
     | ||||   ||||| |||||||||||||||  || |||||  |||||  | ||||||||||| |||| ||| |||||||    
T  11307466 aggggag---attgtcagaaatcaagtgtgactgactatgtctcacatcaactagaaatggaggaaaccttggatatata 11307390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 48635213 - 48635145
Alignment:
Q  325 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||||  ||||||||||| |||||||| |||||||||||| |||||||| ||| |||||| |||||    
T  48635213 ttgttagatttcaagtgtgagtgattatgtcccacattgattataaatggaggaaatattgaacatata 48635145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 53468164 - 53468097
Alignment:
Q  326 tgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    |||| ||||||||||||||| ||| ||||  ||||| ||||||||||||||||||  |||||||||||    
T  53468164 tgttggaaatcaagtgtgagtgataatgtctcacatcgattagaaatggagcaaatgttgaatatata 53468097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 11196922 - 11196998
Alignment:
Q  325 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagag 401  Q
    |||||||||||||||  ||||  ||||||| ||||||  | ||||||||||| |||| ||| |||||||||||||||    
T  11196922 ttgttagaaatcaagcttgagtaattatgtcccacatcaactagaaatggaggaaacgttggatatatataagagag 11196998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 11307796 - 11307696
Alignment:
Q  276 tagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatgga 375  Q
    ||||||||||||  |||||||||||| | | ||||| |||||| ||| ||||| |||||| ||||||||| |||| |||  ||||| || || |||||||    
T  11307796 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgtcagaaattaagtgtgagtgattgtgtctcacatcgactataaatgga 11307697  T
Q  376 g 376  Q
    |    
T  11307696 g 11307696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 12698325 - 12698289
Alignment:
Q  30 ataccccacgtcaattacaacttgagagatgatttta 66  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12698325 ataccccacgtcaattacaacttgatagatgatttta 12698289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 12690676 - 12690711
Alignment:
Q  17 aaatgaaactcatataccccacgtcaattacaactt 52  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12690676 aaatgaaactcctataccccacgtcaattacaactt 12690711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 10396120 - 10396207
Alignment:
Q  324 attgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    |||||| ||||||||||||||| ||||||||  ||||| ||  |||||||||| |||  ||||  ||||||||||||| | |||||||||    
T  10396120 attgttggaaatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttga--atatataagagagaagacccataaa 10396207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 32864613 - 32864687
Alignment:
Q  271 gatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgag 345  Q
    |||||||||||||||||  |||| ||||||| | | ||||| |||||| |||||||||| |||  ||||||||||    
T  32864613 gatcctagtgtggatcagactagcgatgtggatgactcacaattgaggggaaaattgttggaatgcaagtgtgag 32864687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 16559303 - 16559348
Alignment:
Q  331 gaaatcaagtgtgagagattatgttccacattgattagaaatggag 376  Q
    ||||||||||||||| ||||||||| ||||| |||||| |||||||    
T  16559303 gaaatcaagtgtgagcgattatgttacacatcgattaggaatggag 16559348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 215 - 449
Target Start/End: Complemental strand, 21416419 - 21416189
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 314  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  21416419 ctccccaacaaattggtatcagagcctagttaggcttgctgggggagtgggagcgggatcctagtgtggatcatcctagtgatgtgggtgagtcacactt 21416320  T
Q  315 gaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaa 414  Q
     ||| | ||||| |||| ||||||||||||| |||||||| ||||||  | |||| ||||| |||| ||||   ||||||||||||||| ||||||  ||    
T  21416319 cagggggaaatttttaggaatcaagtgtgagtgattatgtcccacatcaactagacatggaacaaaaattg--gatatataagagaggagacccat--aa 21416224  T
Q  415 atccataattttagggttttgggtaagagtgtggt 449  Q
    | ||||    |||||||||||||||||||||||||    
T  21416223 acccattgccttagggttttgggtaagagtgtggt 21416189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 215 - 446
Target Start/End: Original strand, 27597863 - 27598092
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcagg--atcctagtgtggatcatcctagtgatgtgggttagtcacac 312  Q
    |||||||| |||||||||| |||| ||  ||||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||| ||||||||    
T  27597863 ctccccaataaactggtatcagagcctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgtgggtgagtcacac 27597962  T
Q  313 ttga-ggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 411  Q
    |||| ||||| | | ||| ||||||||||||||| ||| ||||  ||||| || || |||| |||||||| ||| |||||||  |||||||| |||||||    
T  27597963 ttgaaggagaga-tcgttggaaatcaagtgtgagtgataatgtctcacatcgactataaattgagcaaacgttggatatata--agagaggagacccata 27598059  T
Q  412 aaaatccataattttagggttttgggtaagagtgt 446  Q
    ||   ||||  | ||||||||||| ||||||||||    
T  27598060 aac--ccattgtcttagggttttgcgtaagagtgt 27598092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 23568990 - 23568901
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggctt-gctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggt 303  Q
    ||||||||||||||||||| | || || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23568990 ctccccaacaaactggtatcatagcctggttaggctttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggt 23568901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 393
Target Start/End: Complemental strand, 23578258 - 23578104
Alignment:
Q  239 tctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaa 338  Q
    ||||||||||||   ||||| ||||||||| ||||||||| ||| ||||  |||||||| ||||| | ||| |||||||| | | |||||| |   |||     
T  23578258 tctagttaggctcagtggggtagtgggagcgggatcctagcgtgaatcaggctagtgatatgggtcactcaaacttgaggcggagattgttgggtttcat 23578159  T
Q  339 gtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||| ||||| || |||||| || ||||||||||| |||| ||| |||||||    
T  23578158 gtgtgagtgattaagtcccacatcgagtagaaatggagaaaacgttggatatata 23578104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 368
Target Start/End: Original strand, 8802413 - 8802526
Alignment:
Q  256 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattatgt 354  Q
    |||||| |||||| |||||||||| |||||||  |||||||||||| | | ||||||||||||  || ||||||  | |||| |||||||| ||||||||    
T  8802413 ggggagcgggagcgggatcctagtatggatcaggctagtgatgtggctgattcacacttgagggaaagattgttgggtaatctagtgtgagtgattatgt 8802512  T
Q  355 tccacattgattag 368  Q
     |||||| ||||||    
T  8802513 cccacatcgattag 8802526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 361
Target Start/End: Complemental strand, 11776294 - 11776196
Alignment:
Q  263 gggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacat 361  Q
    |||||| ||||||||| ||||||||  |||||||||||||| | ||| |||||||| | | |||||| | | ||||||||||  |||||||| ||||||    
T  11776294 gggagcgggatcctagcgtggatcaggctagtgatgtgggtgactcatacttgagggggagattgttgggattcaagtgtgaatgattatgtcccacat 11776196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 2463442 - 2463503
Alignment:
Q  332 aaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| ||| |||| |||||||    
T  2463442 aaatcaagtgtgagtaattatgtcccacattggttagaaatggaggaaatattggatatata 2463503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 21416598 - 21416563
Alignment:
Q  326 tgttagaaatcaagtgtgagagattatgttccacat 361  Q
    |||||||||||||||||||| |||||||||||||||    
T  21416598 tgttagaaatcaagtgtgagtgattatgttccacat 21416563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 11776505 - 11776447
Alignment:
Q  335 tcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||||||| |||||||| ||||||  | ||| ||||||| ||||||||||||||||    
T  11776505 tcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatata 11776447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 27597696 - 27597757
Alignment:
Q  331 gaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||| ||||||||| ||| || |||||||| ||||||||||||||||||| ||| |||||||    
T  27597696 gaaattaagtgtgagtgat-atattccacatcgattagaaatggagcaaacgttggatatata 27597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 2463112 - 2463193
Alignment:
Q  291 tagtgatgtgggttagtcacacttgaggagaaaattgttag-aaatcaagtgtgagagattatgttccacattgattagaaa 371  Q
    ||||||||||||| | |||||||| ||||||| |||||| | |||| ||||||||| ||||||||  ||||| || ||||||    
T  2463112 tagtgatgtgggtgactcacactttaggagaagattgttggaaaattaagtgtgagtgattatgtctcacatcgactagaaa 2463193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 16143327 - 16143513
Alignment:
Q  226 actggtattagagtctagttaggcttgctgg--gggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaa 323  Q
    |||||||| |||| || ||||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| | |     
T  16143327 actggtatcagagcctggttaggcttgctggacgggagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggag 16143426  T
Q  324 attgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataa 412  Q
    |||||| ||||||||||||||| ||| |||||||||||    |||||||||||||||  ||| ||||  |||||||| || ||||||||    
T  16143427 attgttggaaatcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatat--ataagagacgagacccataa 16143513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 213 - 411
Target Start/End: Complemental strand, 40196101 - 40195904
Alignment:
Q  213 gtctccccaacaaactggtattagag-tctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcaca 311  Q
    ||||||||||||| ||||||| |||| ||| |||||||||| ||||| || |||||| ||||||||||||||||||  |||||||||||||| | |||||    
T  40196101 gtctccccaacaa-ctggtatcagagctctggttaggcttggtggggtagcgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcaca 40196003  T
Q  312 cttgaggagaaaattgtt-agaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccat 410  Q
    ||||||| | | ||||||  ||||||||||||||| ||||||||| ||||| || ||| ||||||| |||| |||   ||||||||||||||| ||||||    
T  40196002 cttgagggggagattgttgggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaacgttg--gatatataagagaggagacccat 40195905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 16869744 - 16869651
Alignment:
Q  263 gggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtta--gaaatcaagtgtgagagattatgt 354  Q
    ||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||| | | |||||  | ||||||||||||| ||||||||    
T  16869744 gggagcaagatcctagtgtggatcatgctagtgatgtgggtgattcacacttgaggaggagaatgttagggtaatcaagtgtgagtgattatgt 16869651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 43978796 - 43978675
Alignment:
Q  272 atcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaa-tcaagtgtgagagattatgttccacattgattagaa 370  Q
    ||||||||||||||||  |||||||||||| | | |||||||||||| | | |||||| |||| ||||||||||| |||||||| |||||| || ||| |    
T  43978796 atcctagtgtggatcaaactagtgatgtgg-tgattcacacttgagggggagattgttggaaaatcaagtgtgagtgattatgtcccacatcgactagga 43978698  T
Q  371 atggagcaaacattgaatatata 393  Q
    |||||| |||||||| |||||||    
T  43978697 atggaggaaacattggatatata 43978675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 32201242 - 32201330
Alignment:
Q  254 tgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgt 342  Q
    ||||| ||||||||| |||||||||||| | ||   |||||||||||||| |||||||||||||| | | |||||||||||||||||||    
T  32201242 tggggaagtgggagcgggatcctagtgtaggtccaactagtgatgtgggtgagtcacacttgagggggagattgttagaaatcaagtgt 32201330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 32200943 - 32201058
Alignment:
Q  240 ctagttaggcttgctgggggagtgggagcag-gatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaa 338  Q
    ||||||||||| | ||||||||| ||||||| ||||||| ||| |||||| |||||||||||||| |||||| ||| ||| | | |||||| | ||||||    
T  32200943 ctagttaggctcgatgggggagtaggagcagagatcctaatgtagatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttgggaatcaa 32201042  T
Q  339 gtgtgagagattatgt 354  Q
     |||||| ||||||||    
T  32201043 atgtgagtgattatgt 32201058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 381
Target Start/End: Original strand, 23162107 - 23162231
Alignment:
Q  257 gggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttc 356  Q
    ||||| ||||||  ||| |||||||||||||  ||||| |||||||| | |||||||||||| |  | | || |||||| ||||||||| |||||||| |    
T  23162107 gggagcgggagcgagattctagtgtggatcaggctagtaatgtgggtgactcacacttgaggggggattggtgagaaataaagtgtgagtgattatgtcc 23162206  T
Q  357 cacattgattagaaatggagcaaac 381  Q
    ||||| |||||| ||||||| ||||    
T  23162207 cacatcgattaggaatggaggaaac 23162231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 54017779 - 54017666
Alignment:
Q  263 gggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattatgttccacat 361  Q
    |||||| ||| ||||||||||||||  |||||||||||||| | |||||||||||| | | ||||||  | ||||||||||||| ||||||||  |||||    
T  54017779 gggagcgggaccctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtgattatgtctcacat 54017680  T
Q  362 tgattagaaatgga 375  Q
     || ||| ||||||    
T  54017679 cgactaggaatgga 54017666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 449
Target Start/End: Original strand, 53595950 - 53596070
Alignment:
Q  325 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataatt 424  Q
    ||||| ||||||||||| ||| |||||||| ||||||||| ||||||| ||| |||  |||   ||||||||||||||| ||||||  ||| || | |      
T  53595950 ttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttg--gatatataagagaggagacccat--aaacccgttacc 53596045  T
Q  425 ttagggttttgggtaagagtgtggt 449  Q
    ||| |||||||||||||||||||||    
T  53596046 ttaaggttttgggtaagagtgtggt 53596070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 449
Target Start/End: Original strand, 53596265 - 53596385
Alignment:
Q  325 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataatt 424  Q
    ||||| ||||||||||| ||| |||||||| ||||||||| ||||||| ||| |||  |||   ||||||||||||||| ||||||  ||| || | |      
T  53596265 ttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttg--gatatataagagaggagacccat--aaacccgttacc 53596360  T
Q  425 ttagggttttgggtaagagtgtggt 449  Q
    ||| |||||||||||||||||||||    
T  53596361 ttaaggttttgggtaagagtgtggt 53596385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 16871119 - 16871041
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    ||||||||||||| |||||||| |||||| |||| | ||||||| |||||  ||  |||||||||||||| ||||||||||    
T  16871119 aatcaagtgtgagtgattatgtcccacatcgatttggaatggaggaaacaaaga--atatataagagagggaacccataaa 16871041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 7301579 - 7301400
Alignment:
Q  215 ctccccaacaaactggtattagagtc-tagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacact 313  Q
    |||||||||||||| |||| |||| | | |||||||| | ||||||||||||||| |||||||| |||||||||  |||||||||||||| ||||||| |    
T  7301579 ctccccaacaaactagtatcagagccatggttaggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcacagt 7301480  T
Q  314 tgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||| | ||||||  |||| ||||||||| |||||||| |||||| || ||||||||||| |||| ||| |||||||    
T  7301479 tgaggaggatattgttgaaaattaagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatata 7301400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 413
Target Start/End: Complemental strand, 11638000 - 11637803
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctggggg-agtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacact 313  Q
    |||||||| |||| ||||| |||| ||  ||||||||| |||||| |||| |||  |||||||  |||||||||| ||||| |||||| | |||||||||    
T  11638000 ctccccaagaaacaggtatcagagcctgattaggcttgttggggggagtgagagtgggatccttatgtggatcattctagtcatgtggttgagtcacact 11637901  T
Q  314 tgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    ||||| ||| ||||||  |||||||||||||| ||| |||| | |||| || ||||| || |||||||||||||||  |||||||||||| |||||||||    
T  11637900 tgaggggaagattgttgaaaatcaagtgtgagtgataatgtccaacatcgactagaagtgaagcaaacattgaata--tataagagaggatacccataaa 11637803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 21130217 - 21130105
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggtt 432  Q
    ||||||||||||| |||||||| |||||| || ||| ||||||| |||||   || |||||||||||||| ||||||||||  |||||    ||| ||||    
T  21130217 aatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaa--aagatatataagagagggaacccataaa--tccattgccttaaggtt 21130122  T
Q  433 ttgggtaagagtgtggt 449  Q
    |||| ||||||||||||    
T  21130121 ttggataagagtgtggt 21130105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 22605415 - 22605337
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    ||||||||||||| ||||||||||||||| || ||| ||||||| |||||   |  ||||||||||| |||||||||||||    
T  22605415 aatcaagtgtgagtgattatgttccacatcgactaggaatggaggaaaca--aaggatatataagagtggaaacccataaa 22605337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 15092272 - 15092344
Alignment:
Q  257 gggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt 329  Q
    ||||| |||||  ||||||||||||||||||  ||||| |||| ||| | |||||||||||| ||| ||||||    
T  15092272 gggagcgggagtgggatcctagtgtggatcagactagtaatgttggtgactcacacttgaggggaagattgtt 15092344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 217 - 443
Target Start/End: Original strand, 13112875 - 13113096
Alignment:
Q  217 ccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttga 316  Q
    ||||||||||||||||| |||| ||  ||||||||||||||| |||| |||| |||||| ||| |||||| || ||||||| || || ||||||||||||    
T  13112875 ccccaacaaactggtatcagagccttcttaggcttgctggggaagtgagagcgggatcccagt-tggatcttcttagtgatatgagtgagtcacacttga 13112973  T
Q  317 ggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaat 416  Q
    || | | |||||| ||||||||| ||||| ||| || | |||||| || ||||||| ||||||||||||   ||||||||||||||| ||||||  |||     
T  13112974 gggggagattgttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattg--gatatataagagaggagacccat--aaac 13113069  T
Q  417 ccataattttagggttttgggtaagag 443  Q
    |||| || ||||| |||||||||||||    
T  13113070 ccatcatcttaggattttgggtaagag 13113096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 217 - 443
Target Start/End: Original strand, 13042879 - 13043100
Alignment:
Q  217 ccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttga 316  Q
    ||||||||||||||||| |||| ||  ||||||||||||||| |||| | || |||||| ||| |||||| || ||||||| || || ||||||||||||    
T  13042879 ccccaacaaactggtatcagagccttcttaggcttgctggggaagtgagtgcgggatcccagt-tggatcttcttagtgatatgagtgagtcacacttga 13042977  T
Q  317 ggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaat 416  Q
    || | | |||||| ||||||||| ||||| ||| || | |||||| || ||||||| ||||||||||||   ||||||||||||||| ||||||  |||     
T  13042978 gggggagattgttggaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattg--gatatataagagaggagacccat--aaac 13043073  T
Q  417 ccataattttagggttttgggtaagag 443  Q
    |||| || ||||| |||||||||||||    
T  13043074 ccatcatcttaggattttgggtaagag 13043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 215 - 449
Target Start/End: Original strand, 13112418 - 13112647
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 314  Q
    ||||||||||||||| |||| |||||| |||||||||| ||||||||||||||  | ||| || |||||  | |||||||||||||| | ||||||||||    
T  13112418 ctccccaacaaactgatatttgagtctggttaggcttgttgggggagtgggagtggaatcatattgtgggccttcctagtgatgtggatgagtcacactt 13112517  T
Q  315 gaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaa 414  Q
    || |||    ||||| ||||||||||||||| ||| || | |||||| || ||||||| |||||||||||  | ||||||||||||||| ||||||  ||    
T  13112518 ga-gagggggttgttggaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacatt--agatatataagagaggagacccat--aa 13112612  T
Q  415 atccataattttagggttttgggtaagagtgtggt 449  Q
    | ||||  | ||| |||||||| ||||||||||||    
T  13112613 acccattgtcttaaggttttggataagagtgtggt 13112647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 385
Target Start/End: Complemental strand, 36389272 - 36389102
Alignment:
Q  212 agtctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcaca 311  Q
    ||||||| |||||||||||||| |||   || ||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||  ||||| |    
T  36389272 agtctcctcaacaaactggtatcagaacataattaggcttgctgggggagtgggagcggaatcctagt-tggatcgtcctagtgatgtggg--agtcaaa 36389176  T
Q  312 cttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattg 385  Q
    ||||||| | |  ||||| | ||||||||| ||| ||| |||| ||||||  | ||||||||||||||||||||    
T  36389175 cttgagggggagtttgttgggaatcaagtgcgagtgataatgtcccacatcaactagaaatggagcaaacattg 36389102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 236 - 413
Target Start/End: Original strand, 13042441 - 13042615
Alignment:
Q  236 gagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaat 335  Q
    |||||| |||||||||| ||||||||||||||  | ||| || |||||  | |||||||||||||||| |||||||||||| |||    ||||| |||||    
T  13042441 gagtctggttaggcttgttgggggagtgggagtggaatcatattgtgggccttcctagtgatgtgggtgagtcacacttga-gagggggttgttggaaat 13042539  T
Q  336 caagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    |||||||||| ||| || | |||||| || ||||||| |||||||||||  | ||||||||||||||| |||||||||    
T  13042540 caagtgtgagtgataatatcccacatcgactagaaatagagcaaacatt--agatatataagagaggagacccataaa 13042615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 412
Target Start/End: Original strand, 14168854 - 14169009
Alignment:
Q  256 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttaga-aatcaagtgtgagagattatgt 354  Q
    |||||| |||| |||||| |||||||||||||| |||||||||||| | | ||| |||||||| | | |||||| || |||||||||| || ||||||||    
T  14168854 ggggagcgggaacaggattctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattgttggataatcaagtgtaagggattatgt 14168953  T
Q  355 tccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataa 412  Q
     |||||| || ||| ||||||| |||||   |  |||||||||||||| |||||||||    
T  14168954 cccacatcgactaggaatggaggaaaca--aaggatatataagagagggaacccataa 14169009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 295 - 401
Target Start/End: Original strand, 13042672 - 13042776
Alignment:
Q  295 gatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatat 394  Q
    ||||||||| |||||||||||||| |   | |||| ||||||||||||||| |||||||| ||||||  | |||||||||||||||||||  | ||||||    
T  13042672 gatgtgggtgagtcacacttgagggggggactgttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacatt--agatatat 13042769  T
Q  395 aagagag 401  Q
    |||||||    
T  13042770 aagagag 13042776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 295 - 401
Target Start/End: Original strand, 13112670 - 13112774
Alignment:
Q  295 gatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatat 394  Q
    ||||||||| |||||||||||||| |   | |||| ||||||||||||||| |||||||| ||||||  | |||||||||||||||||||  | ||||||    
T  13112670 gatgtgggtgagtcacacttgagggggggactgttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacatt--agatatat 13112767  T
Q  395 aagagag 401  Q
    |||||||    
T  13112768 aagagag 13112774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 361
Target Start/End: Original strand, 41341376 - 41341482
Alignment:
Q  256 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattatgt 354  Q
    |||||| | |||| ||||||||||||||||||  |||||||||||||| | |||||||||||| | | ||| ||  | ||||||||||||| ||||||||    
T  41341376 ggggagcgagagcgggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgggtaatcaagtgtgagtgattatgt 41341475  T
Q  355 tccacat 361  Q
     ||||||    
T  41341476 cccacat 41341482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 34103552 - 34103595
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggag 376  Q
    ||||||||||||| ||||||||||||||| || |||||||||||    
T  34103552 aatcaagtgtgagtgattatgttccacatcgaatagaaatggag 34103595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 447
Target Start/End: Original strand, 13112245 - 13112356
Alignment:
Q  332 aaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggt 431  Q
    ||||||||||||||  || ||||  |||||||||||||| ||||||||| |||  | ||||||||| ||||| ||||  ||||| ||||  | |||| ||    
T  13112245 aaatcaagtgtgagtaataatgtctcacattgattagaattggagcaaaaatt--agatatataagtgaggagaccc--aaaaacccatcgtcttagagt 13112340  T
Q  432 tttgggtaagagtgtg 447  Q
    ||| ||||||||||||    
T  13112341 ttttggtaagagtgtg 13112356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 33036303 - 33036258
Alignment:
Q  331 gaaatcaagtgtgagagattatgttccacattgattagaaatggag 376  Q
    ||||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  33036303 gaaattaagtgtgagggattatgtttcacatcgattagaaatggag 33036258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 215 - 372
Target Start/End: Complemental strand, 34666088 - 34665930
Alignment:
Q  215 ctccccaacaaactggtattagagtc-tagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacact 313  Q
    ||||||||||||||||||| |||||| | |||||||| |||||||  |||||||| ||||||||||||||||||  ||||||||||| || | |||||||    
T  34666088 ctccccaacaaactggtatcagagtcctggttaggctcgctggggtggtgggagcgggatcctagtgtggatcacactagtgatgtgagtaaatcacact 34665989  T
Q  314 tgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaat 372  Q
    |||||   | |||||| ||||||| ||||||| |||||| | |||||| || |||||||    
T  34665988 tgagggagagattgttggaaatcatgtgtgagtgattatatcccacatcgactagaaat 34665930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 376
Target Start/End: Complemental strand, 31973585 - 31973452
Alignment:
Q  243 gttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgt 342  Q
    |||||||| | ||| ||||||||||| ||||||||||||||||||  ||||||||||| || |||||||||||||| | | |||||| ||||||||||||    
T  31973585 gttaggctcgatggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagattgttggaaatcaagtgt 31973486  T
Q  343 gagagattatgttccacattgattagaaatggag 376  Q
    ||| ||||||||  ||||  || |||||||||||    
T  31973485 gagtgattatgtctcacaccgactagaaatggag 31973452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 47159258 - 47159161
Alignment:
Q  218 cccaacaaactggtattagagtc-tagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 314  Q
    ||||||||| |||||| |||||| | |||||||| | || | ||||| |||  |||||||||||||||||||||||||||||||| | ||||||||||    
T  47159258 cccaacaaattggtatcagagtcctggttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 47159161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 12466272 - 12466341
Alignment:
Q  324 attgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||||||||||||||| || |||||||| ||||||  | ||||||||||| |||| ||| |||||||    
T  12466272 attgttagaaatcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatata 12466341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 25294947 - 25294887
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||||||||| |||||||| ||||||||  ||| ||||||| |||||||| |||||||    
T  25294947 aatcaagtgtgagtgattatgtcccacattggctaggaatggaggaaacattggatatata 25294887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 27686685 - 27686608
Alignment:
Q  332 aaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 411  Q
    |||| ||||||||| ||||||||||||||| || ||| ||||||| |||||||  | ||||||||||||| |||| ||||    
T  27686685 aaattaagtgtgagtgattatgttccacatcgactaggaatggaggaaacatt--agatatataagagagaaaactcata 27686608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 43834430 - 43834512
Alignment:
Q  270 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattat 352  Q
    ||||||||||||||||||  ||||||||||| || | |||||||||||| | | |||||| |   ||||||||||| ||||||    
T  43834430 ggatcctagtgtggatcaggctagtgatgtgagtgactcacacttgaggtggagattgttgggtttcaagtgtgagtgattat 43834512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 3671129 - 3671046
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatg 298  Q
    |||||||||||| |||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3671129 ctccccaacaaattggtatcagagtctggctaggcttgctgggggagtgggagcgggatcctagtgtggatcgtcctagtgatg 3671046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 256 - 393
Target Start/End: Complemental strand, 5981680 - 5981542
Alignment:
Q  256 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattg-ttagaaatcaagtgtgagagattatgt 354  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||| | |||| ||||||| | | |||| || ||||||||||||||| ||||||||    
T  5981680 ggggagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagattgtttggaaatcaagtgtgagtgattatgt 5981581  T
Q  355 tccacattgattagaaatggagcaaacattgaatatata 393  Q
     |||||| || ||| ||||||| |||| ||| |||||||    
T  5981580 cccacatcgactaggaatggagaaaacgttggatatata 5981542  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 243 - 411
Target Start/End: Complemental strand, 2954475 - 2954309
Alignment:
Q  243 gttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgt 342  Q
    |||||||| | |||||||||||||||| |||||||||||||||||  |||||||||||||| | |||||||||||| | | ||||||     ||||||||    
T  2954475 gttaggctcggtgggggagtgggagcaagatcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagattgttgagtttcaagtgt 2954376  T
Q  343 gagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 411  Q
    ||| |||||| | |||||| || ||| ||||||| |||  |||   ||||||||||||||| |||||||    
T  2954375 gagtgattatttcccacatcgactaggaatggagaaaatgttg--gatatataagagaggagacccata 2954309  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 23753147 - 23753048
Alignment:
Q  244 ttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtg 343  Q
    ||||| ||| ||| ||||||||||| |||| ||||| ||||||||| ||||||||||||| | |||||||||||| | | |||| | |||||||||||||    
T  23753147 ttaggtttgatggaggagtgggagcgggattctagt-tggatcatcgtagtgatgtgggtgaatcacacttgagggggagattgatggaaatcaagtgtg 23753049  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 5981893 - 5981815
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    ||||||||||||| |||||||| ||||||  ||||| ||||||| |||| |||   ||||||||||||||  |||||||||    
T  5981893 aatcaagtgtgagggattatgtcccacatcaattaggaatggaggaaacgttg--gatatataagagaggggacccataaa 5981815  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 12156818 - 12156769
Alignment:
Q  333 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaaca 382  Q
    ||||||||||||| |||||||| |||||| |||||| ||||||| |||||    
T  12156818 aatcaagtgtgagtgattatgtcccacatcgattaggaatggaggaaaca 12156769  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 413
Target Start/End: Original strand, 28226537 - 28226731
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 314  Q
    ||||||||||||||||||| |||| |||||||| ||||||||| |||||||||| |||||||||| || |||| ||||||||||  ||| |||||| |||    
T  28226537 ctccccaacaaactggtatcagagcctagttagacttgctgggagagtgggagcgggatcctagt-tgaatcaacctagtgatg-aggtgagtcacgctt 28226634  T
Q  315 gaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 413  Q
    |||| | | |||||| ||||||||||||||  ||| || |  ||||| ||  |||||||| ||||| ||||   ||||||||||||||| || ||||||    
T  28226635 gagggggagattgttggaaatcaagtgtgactgataatatcacacatcgacaagaaatggggcaaatattg--gatatataagagaggagactcataaa 28226731  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 13792292 - 13792227
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctg-ggggagtgggagcaggatcctagt 279  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  13792292 ctccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagt 13792227  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 381
Target Start/End: Complemental strand, 11727869 - 11727758
Alignment:
Q  270 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattaga 369  Q
    ||||||||||||||||||  |||||||||||||| | ||||||| |||  | | ||| ||  |||| |||||||||  ||||||||| ||||||| ||||    
T  11727869 ggatcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattattgaaaattaagtgtgagtaattatgttctacattgactaga 11727770  T
Q  370 aatggagcaaac 381  Q
    ||||||| ||||    
T  11727769 aatggagaaaac 11727758  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 449
Target Start/End: Original strand, 28226327 - 28226447
Alignment:
Q  325 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataatt 424  Q
    ||||| ||||||||||||||| | | |||| |||||| || ||||||||||| |||| |||   ||||||||||||||| ||||||||| |  |||  |     
T  28226327 ttgttggaaatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttg--gatatataagagaggagacccataaaca--cattgtc 28226422  T
Q  425 ttagggttttgggtaagagtgtggt 449  Q
    |||||||||| ||||||||||||||    
T  28226423 ttagggttttaggtaagagtgtggt 28226447  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 13792481 - 13792417
Alignment:
Q  217 ccccaacaaactggtattagagtctagttaggcttgct--gggggagtgggagcaggatcctagt 279  Q
    ||||||||||||||||| |||| |||||||||||||||  |||||||||| ||| ||||| ||||    
T  13792481 ccccaacaaactggtatcagagcctagttaggcttgctaggggggagtggaagcgggatcttagt 13792417  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 344
Target Start/End: Complemental strand, 35414420 - 35414293
Alignment:
Q  215 ctccccaacaaactggtattagagtctagttaggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 314  Q
    |||||||| ||  |||||| ||||||| ||||||||||||  ||||||| || | ||||||||||||||| | || ||||| | ||| | ||||||||||    
T  35414420 ctccccaataatttggtatcagagtcttgttaggcttgctaagggagtgtgaacgggatcctagtgtggaccgtcttagtggtttggatgagtcacactt 35414321  T
Q  315 gaggagaaaattgttagaaatcaagtgtga 344  Q
     | ||| |||||||| |||||||| |||||    
T  35414320 ca-gag-aaattgttggaaatcaaatgtga 35414293  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 44981986 - 44981910
Alignment:
Q  270 ggatcctagtgtggatcatc-ctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgag 345  Q
    ||||||||||||||||||   |||||||||||||| | |||||||||||| | |||||| | ||| |||||||||||    
T  44981986 ggatcctagtgtggatcaaggctagtgatgtgggtgactcacacttgagggggaaattgctggaattcaagtgtgag 44981910  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 13792664 - 13792594
Alignment:
Q  323 aattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 393  Q
    ||||||| ||||||||||||||| |||||||| ||||||  | ||||||||||| ||| |||  |||||||    
T  13792664 aattgttggaaatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatata 13792594  T

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Target: scaffold0548 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 4286 - 4186
Alignment:
Q  276 tagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatgga 375  Q
    ||||||||||||  |||||||||||| | | ||||| |||||| ||| ||||| |||||| ||||||||| |||| |||  ||||| || || |||||||    
T  4286 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgtcagaaattaagtgtgagtgattgtgtctcacatcgactataaatgga 4187  T
Q  376 g 376  Q
    |    
T  4186 g 4186  T

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Target: scaffold0160 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 27604 - 27532
Alignment:
Q  337 aagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 411  Q
    ||||||||| |||||||||| |||| || ||||||||||  |||||||||  ||| ||||||||||| |||||||    
T  27604 aagtgtgagtgattatgttctacatcgactagaaatggaagaaacattga--atacataagagaggagacccata 27532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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