View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1716_low_8 (Length: 394)
Name: NF1716_low_8
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1716_low_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 47559348 - 47558965
Alignment:
| Q |
11 |
cataggaattgaagtccaatactaagtggatgaaacaagcccatttgagtccacttgagttccaggagtgaaggaggaggaagaagacgactttggttgt |
110 |
Q |
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| T |
47559348 |
cataggaattgaagtccaatacgaagtggatgaaacaagcccatttgagtccacttgagttccaggagtgaaggaggaggaagaagacgactttggttgt |
47559249 |
T |
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| Q |
111 |
ggccgtagtatcaccactcaccagagatagcaacaacctttgttactgattgaaattgaaatcgaactccaaaaattcaaagatgctccgaatatggata |
210 |
Q |
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| T |
47559248 |
ggccgtagtatcaccactcaccagagatagcaacaacctttgttactgattgaaattgaaatcgaactccaaaaattcaaagatgctccgaatatggata |
47559149 |
T |
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| Q |
211 |
cgtggaagaacatcaaagacagagaatccggaaaattgcgtccaaattccttcgctaatcgcataaaatcaaatcgaatttcacaactcgagttatcaaa |
310 |
Q |
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| T |
47559148 |
cgtggaagaacatcaaagacagagaatccggaaaattgcgtccaaattccttcgctaatcgcataaaatcaaatcgaatttcacaactcgagttatcaaa |
47559049 |
T |
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| Q |
311 |
tcacaaagaactcgtttcccctcacaaaggttccattaattcccttcaaattgatttaactgaaggaagatatttgttatctgc |
394 |
Q |
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| T |
47559048 |
tcacaaagaactcgtttcccctcacaaaggttccattaattcccttcaaattgatttaactgaaggaagatatttgttatctgc |
47558965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 44869353 - 44869385
Alignment:
| Q |
362 |
tgatttaactgaaggaagatatttgttatctgc |
394 |
Q |
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| T |
44869353 |
tgatttaacagaaggaagatatttgttatctgc |
44869385 |
T |
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