View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1716_low_9 (Length: 350)

Name: NF1716_low_9
Description: NF1716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1716_low_9
NF1716_low_9
[»] chr8 (4 HSPs)
chr8 (12-335)||(28994185-28994508)
chr8 (222-333)||(31263652-31263763)
chr8 (86-154)||(9493613-9493681)
chr8 (116-154)||(36116053-36116091)
[»] chr3 (3 HSPs)
chr3 (12-132)||(44497520-44497640)
chr3 (28-132)||(29829940-29830044)
chr3 (21-97)||(2063998-2064074)
[»] chr6 (1 HSPs)
chr6 (28-132)||(1606197-1606301)
[»] chr2 (6 HSPs)
chr2 (153-317)||(4222496-4222660)
chr2 (21-154)||(19862408-19862541)
chr2 (21-58)||(19866977-19867014)
chr2 (21-58)||(19871878-19871915)
chr2 (21-58)||(19876779-19876816)
chr2 (21-58)||(36585660-36585697)
[»] chr1 (4 HSPs)
chr1 (25-132)||(22049282-22049389)
chr1 (116-154)||(50442485-50442523)
chr1 (113-154)||(51788873-51788914)
chr1 (22-58)||(48580683-48580719)
[»] chr5 (3 HSPs)
chr5 (88-156)||(39384269-39384337)
chr5 (88-154)||(39289001-39289067)
chr5 (233-317)||(41731110-41731194)
[»] chr7 (1 HSPs)
chr7 (116-156)||(8291333-8291373)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 335
Target Start/End: Original strand, 28994185 - 28994508
Alignment:
Q  12 aacctgtggcccgaaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994185 aacctgtggcccgaaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaagg 28994284  T
Q  112 tttgggcccgaaccctcccgaacccgtccgatgtccacccctaatcatcattgtgtggcgggatgcggcgaggtcgaaacagcccaaaatctgttaattt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994285 tttgggcccgaaccctcccgaacccgtccgatgtccacccctaatcatcattgtgtggcgggatgcggcgaggtcgaaacagcccaaaatctgttaattt 28994384  T
Q  212 cctgtccgatttttgcaggaatttggggacatattcggtcctagttgggaatagtttcagcagagccttttcgagtgacagagcatttttatcagtttgt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994385 cctgtccgatttttgcaggaatttggggacatattcggtcctagttgggaatagtttcagcagagccttttcgagtgacagagcatttttatcagtttgt 28994484  T
Q  312 ttactcagcaggtgagttgcgtgt 335  Q
    ||||||||||||||||||||||||    
T  28994485 ttactcagcaggtgagttgcgtgt 28994508  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 31263763 - 31263652
Alignment:
Q  222 ttttgcaggaatttggggacatattcggtcctagttgggaatagtttcagcagagccttttcgagtgacagagcatttttatcagtttgtttactcagca 321  Q
    |||||||| | ||||||||||||||||||||| ||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  31263763 ttttgcagcagtttggggacatattcggtcctggttgggaatagcttcagccgaacctttttgagtgacagagcatttttatcagtttgtttactcagca 31263664  T
Q  322 ggtgagttgcgt 333  Q
    |||| |||||||    
T  31263663 ggtgggttgcgt 31263652  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 9493681 - 9493613
Alignment:
Q  86 aaccgcgggttggtatgggttgaaggtttgggcccgaaccctcccgaacccgtccgatgtccaccccta 154  Q
    |||||||||||||  ||||| |  | ||||| ||||||||| |||||||||| ||||||||||||||||    
T  9493681 aaccgcgggttgggctgggtgggtgctttggacccgaacccgcccgaacccgcccgatgtccaccccta 9493613  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 36116053 - 36116091
Alignment:
Q  116 ggcccgaaccctcccgaacccgtccgatgtccaccccta 154  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  36116053 ggcccgaacccgcccgaacccgcccgatgtccaccccta 36116091  T

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Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 44497520 - 44497640
Alignment:
Q  12 aacctgtggcccgaaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaagg 111  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44497520 aacccgtgacccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaagg 44497619  T
Q  112 tttgggcccgaaccctcccga 132  Q
    ||||||||||||||| |||||    
T  44497620 tttgggcccgaacccgcccga 44497640  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 29829940 - 29830044
Alignment:
Q  28 gacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaaggtttgggcccgaaccct 127  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  29829940 gacccgaacccgtacaaaccgaagaagaaaaatgggtggaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccg 29830039  T
Q  128 cccga 132  Q
    |||||    
T  29830040 cccga 29830044  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 2064074 - 2063998
Alignment:
Q  21 cccgaaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttg 97  Q
    |||||||||||| ||||||| |||||||||||||||||    ||  ||||||||   ||||||||||||||||||||    
T  2064074 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagtttaaatgggtctgtacacacaaaccgcgggttg 2063998  T

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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 1606197 - 1606301
Alignment:
Q  28 gacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaaggtttgggcccgaaccct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  1606197 gacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccg 1606296  T
Q  128 cccga 132  Q
    |||||    
T  1606297 cccga 1606301  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 4222496 - 4222660
Alignment:
Q  153 taatcatcattgtgtggcgggatgcggcgaggtcgaaacagcccaaaatctgttaatttcctgtccgatttttgcaggaatttggggacatattcggtcc 252  Q
    |||||| ||||||||||||||||| ||||| |||||  |||  ||| || |||| |||||||||||| ||||||| |   | |||||||| |||||||||    
T  4222496 taatcaacattgtgtggcgggatgtggcgatgtcgagtcagttcaacatttgtttatttcctgtccgttttttgcggctgtgtggggacacattcggtcc 4222595  T
Q  253 tagttgggaatagtttcagcagagccttttcgagtgacagagcatttttatcagtttgtttactc 317  Q
    | |||||| ||||  ||||  ||||||| ||||||| || ||||||||||||| |||||||||||    
T  4222596 tggttggggatagcctcagtcgagccttctcgagtgtcaaagcatttttatcaatttgtttactc 4222660  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 19862408 - 19862541
Alignment:
Q  21 cccgaaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaaggtttgggccc 120  Q
    |||||||||||| ||||||| |||||||||||||||||    |   ||||||||   ||||||||||||||||||||   ||||| ||   ||  | |||    
T  19862408 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaaaccgcgggttgagctgggtcgagctttcagaccc 19862507  T
Q  121 gaaccctcccgaacccgtccgatgtccaccccta 154  Q
    |||||| |||||||||| ||| ||||||||||||    
T  19862508 gaacccgcccgaacccgcccgttgtccaccccta 19862541  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 19866977 - 19867014
Alignment:
Q  21 cccgaaagacccaaacccgtacaaaccgaagaagaaaa 58  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  19866977 cccgaaagacccgaacccgtgcaaaccgaagaagaaaa 19867014  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 19871878 - 19871915
Alignment:
Q  21 cccgaaagacccaaacccgtacaaaccgaagaagaaaa 58  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  19871878 cccgaaagacccgaacccgtgcaaaccgaagaagaaaa 19871915  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 19876779 - 19876816
Alignment:
Q  21 cccgaaagacccaaacccgtacaaaccgaagaagaaaa 58  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  19876779 cccgaaagacccgaacccgtgcaaaccgaagaagaaaa 19876816  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 36585660 - 36585697
Alignment:
Q  21 cccgaaagacccaaacccgtacaaaccgaagaagaaaa 58  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  36585660 cccgaaagacccgaacccgtgcaaaccgaagaagaaaa 36585697  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 22049282 - 22049389
Alignment:
Q  25 aaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttggtatgggttgaaggtttgggcccgaac 124  Q
    |||||||| |||  ||||||||||||||||| ||||||| ||||||||||  ||| |||||||| ||| ||||| || |||||| |||| ||||| ||||    
T  22049282 aaagacccgaacttgtacaaaccgaagaagagaaatgggcagaaatgggtctctatacacaaactgcgagttgggataggttgagggttcgggcctgaac 22049381  T
Q  125 cctcccga 132  Q
    || |||||    
T  22049382 ccgcccga 22049389  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 50442485 - 50442523
Alignment:
Q  116 ggcccgaaccctcccgaacccgtccgatgtccaccccta 154  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  50442485 ggcccgaacccgcccgaacccgcccgatgtccaccccta 50442523  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 51788873 - 51788914
Alignment:
Q  113 ttgggcccgaaccctcccgaacccgtccgatgtccaccccta 154  Q
    |||||||||||||| |||||||||| |||||| |||||||||    
T  51788873 ttgggcccgaacccgcccgaacccgcccgatgcccaccccta 51788914  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 48580719 - 48580683
Alignment:
Q  22 ccgaaagacccaaacccgtacaaaccgaagaagaaaa 58  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  48580719 ccgaaagacccgaacccgtgcaaaccgaagaagaaaa 48580683  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 39384269 - 39384337
Alignment:
Q  88 ccgcgggttggtatgggttgaaggtttgggcccgaaccctcccgaacccgtccgatgtccacccctaat 156  Q
    ||||||||| |  ||||| || ||||||||||||||||| |||||||||| ||||||||||||||||||    
T  39384269 ccgcgggttcggctgggtggagggtttgggcccgaacccgcccgaacccgcccgatgtccacccctaat 39384337  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 39289067 - 39289001
Alignment:
Q  88 ccgcgggttggtatgggttgaaggtttgggcccgaaccctcccgaacccgtccgatgtccaccccta 154  Q
    ||||||||| |  ||||| || ||||||||||||||||| |||||||||| ||||||||||||||||    
T  39289067 ccgcgggttcggctgggtggagggtttgggcccgaacccgcccgaacccgcccgatgtccaccccta 39289001  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 41731194 - 41731110
Alignment:
Q  233 tttggggacatattcggtcctagttgggaatagtttcagcagagccttttcgagtgacagagcatttttatcagtttgtttactc 317  Q
    |||||||  |||||||||||| |||||| |||  |||||  ||||| | ||||||| | ||||||||||||||||||||| ||||    
T  41731194 tttggggcaatattcggtcctcgttggggatatcttcagtcgagccctatcgagtgtcggagcatttttatcagtttgttcactc 41731110  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 8291373 - 8291333
Alignment:
Q  116 ggcccgaaccctcccgaacccgtccgatgtccacccctaat 156  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  8291373 ggcccgaacccgcccgaacccgcccgatgtccacccctaat 8291333  T

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