View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717-Insertion-1 (Length: 824)

Name: NF1717-Insertion-1
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717-Insertion-1
NF1717-Insertion-1
[»] chr4 (2 HSPs)
chr4 (334-824)||(26350019-26350522)
chr4 (8-279)||(26350577-26350851)


Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 334 - 824
Target Start/End: Complemental strand, 26350522 - 26350019
Alignment:
Q  334 cattcatagatctatttgtgctcatatgttggtgaaattattttcttttgttagatttaatttaatctccttcaacctttttgattttcttctgtaaatt 433  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26350522 cattcatagatctatttgtgctcttatgttggtgaaattattttcttttgttagatttaatttaatctccttcaacctttttgattttcttctgtaaatt 26350423  T
Q  434 gaactgaattagttaactttgttgttgcagtggattagtgttggtacaagtcaatggtacaattgaaatgaatgaatttgaatgagaaagaaagtagaac 533  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26350422 gagctgaattagttaactttgttgttgcagtggattagtgttggtacaagtcaatggtacaattgaaatgaatgaatttgaatgagaaagaaagtagaac 26350323  T
Q  534 tgtctcgcgatggag------------gttaatggaaacggaccaagtgaaaatggatactctattgctaggcacacacactcttatcaaccctcgataa 621  Q
    |||||||||||||||            ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26350322 tgtctcgcgatggagaattcgtataaggttaatggaaatggaccaagtgaaaatggatactctattgctaagcacacacactcttatcaaccctcgataa 26350223  T
Q  622 agggttcgttaccgtggttagacataagggtgttttatgtaagggtttgcaagtgtgagcttgataattccactcctgagattctcacacttaaccatgt 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26350222 agggttcgttaccgtggttagacataagggtgttttatgtaagggtttgcaagtgtgagcttgataattccactcctgagattctcacacttaaccatgt 26350123  T
Q  722 tcctttaaatcccgatacccttcttgaagttaatggcgttcgtagtggtttatattctgatgggatttcaacccttctc-aaagggatagggtggataga 820  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  26350122 tcctttaaatcccgatacccttcttgaagttaacggcgttcgtagtggtttatactctgatgggatttcaacccttctcaaaagggatagggtggataga 26350023  T
Q  821 aaat 824  Q
    ||||    
T  26350022 aaat 26350019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 26350851 - 26350577
Alignment:
Q  8 gttatgttggaagagtttctagattcatcttatcctctttttgtctctttttcagctctggtaattgtttcattttctactcataactttattatccann 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26350851 gttatgttggaagagtttctagattcatcttatcctctttttgtctctttttcagctctggtaattgtttcattttctactcataactttattatccatt 26350752  T
Q  108 nnnnnnctttaattcttacatttgcaaattcatcttgaatttcattttggattattgaagattcaatcctatttcttgtttgta---nnnnnnnnnnnnn 204  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  26350751 ttttttctttaattcttacatttgcaaattcatcttgaatttcattttggattattgaagattcaatcctatttcttgtttgtatttttttttttttttt 26350652  T
Q  205 nnaatttgattgagtaaggttagtttctttctcctcagaaagtagaacttatcttgttttattgtatctgtgagc 279  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26350651 ttaatttgattgagtaaggttagtttctttctcctcagaaagtagaacttatcttgttttattgtatctgtgagc 26350577  T

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