View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1717-Insertion-10 (Length: 739)
Name: NF1717-Insertion-10
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-10 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 701; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 7 - 739
Target Start/End: Original strand, 34669888 - 34670620
Alignment:
| Q |
7 |
acaactgacactggaccccttctatcggtgattaatagcattacgtttatgttaataatatgataattacatcaaactatcaaaaaagctaaccatatct |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34669888 |
acaactgacactgaaccccttctatcggtgattaatagcattacgtttatgttaataatatgataattacatcaaactatcaaaaaagctaaccatatct |
34669987 |
T |
|
| Q |
107 |
taggactttcatttgcaaacccaaaatgcatatatacctgcaatgcaacttgcacccatatcatccagatctcttctcgcatcaaacttcaagtctgaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34669988 |
taggactttcatttgcaaacccaaaatgcatatatacctgcaatgcaacttgcacccatatcatccaaatctcttctcgcatcaaacttcaagtctgaac |
34670087 |
T |
|
| Q |
207 |
caacagaaatccacctgcataagatcaatggaacatgaaaataggaattaaaagatcaactgcaagttgaaattacaaacatgtgtgcatgcatagtaaa |
306 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34670088 |
caacagaaatccacctgagtaagatcaatggaacatgaaaataggaattaaaagatcaactgcaagttgaaattacaaacatgtatgcatgcatagtaaa |
34670187 |
T |
|
| Q |
307 |
gcacattgaaaagtgaatgtttatctaaattcataaaagcatgcccatgattacatgtacaaattgtgacctaaacttacaaggcttttctccttccatg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34670188 |
gcacattgaaaagtgaatgtttatctaaattcataaaagcatgcccatgattacatgtacaaattgtgacctaaacttacagggcttttctccttccatg |
34670287 |
T |
|
| Q |
407 |
gtgccagttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaagaaagaatcctgccctagcaccactgggaatgtgt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34670288 |
gtgccagttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaagaaagaatcctgccctagcaccactgggaatgtgt |
34670387 |
T |
|
| Q |
507 |
tgaaggtgtctctaccatgcaaagaagcatcacacatatgaaaattaaattgtaattctatataattatttattatcgatattccatcatgtggtgagag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34670388 |
tgaaggtgtctctaccatgcaaagaagcatcacacatatgaaaattaaattgtaattctatataattatttattatcgatattcaatcatgtggtgagag |
34670487 |
T |
|
| Q |
607 |
aaacctgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttcccaatcattcttaatcattgggtcataagtaggctcggg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34670488 |
aaacctgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttccaaatcattcttaatcattgggtcataagtaggctcggg |
34670587 |
T |
|
| Q |
707 |
tggctgcactgcagacaaagaagatgtctctac |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
34670588 |
tggctgcactgcagacaaagaagatgtctctac |
34670620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 736
Target Start/End: Original strand, 34631566 - 34632286
Alignment:
| Q |
16 |
actggaccccttctatcggtgattaatagcattacgtttatgttaataatatgataattacatcaaactatcaaaaaagctaaccatatcttaggacttt |
115 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||| | ||||||||||| ||||||||||||||||||||| |||| ||| ||| |||||| |||||||| |
|
|
| T |
34631566 |
actgaaccccttctatccctgattaataccatttcttttatgttaatggtatgataattacatcaaactaccaaagaagttaatcatatcataggacttc |
34631665 |
T |
|
| Q |
116 |
catttgcaaacccaaaatgcatatatacctgcaatgcaacttgcacccatatcatccagatctcttctcgcatcaaacttcaagtctgaaccaacagaaa |
215 |
Q |
| |
|
||| || |||||||| || ||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
34631666 |
agtttacagacccaaaaagc----atacctgaaatgcaacttgcacccatatcatccaaatctctcctggcatcaaacttcaagtctgagccaacagaaa |
34631761 |
T |
|
| Q |
216 |
tccacctgcataagatcaatggaacatgaaaataggaattaaaagatcaactgcaagttgaaattacaaac----atgtgtgcatgcatagtaaagcaca |
311 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||| |||||||| | |||||||| |
|
|
| T |
34631762 |
tccacctgcgtaagatcattggaacatgaaaataggaattaaaagacccactccaagttgaaattacaaacgagtatgcatgcatgcacaataaagcacg |
34631861 |
T |
|
| Q |
312 |
ttgaaaagtgaatgtttatctaaattcataaaagcatgcccatgattacatgtacaaattgtgacctaaacttacaaggcttttctccttccatggtgcc |
411 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
34631862 |
ttgaaaagtgaatgtttatctcaattcttaaaagcatgcccatgattacatgcacaaattgtgacttaaacttacagggtttttctccttccatggtgcc |
34631961 |
T |
|
| Q |
412 |
agttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaagaaagaatcctgccctagcaccactgggaatgtgttgaag |
511 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34631962 |
agttctcccagattagcccagcgactgttcgacctttacctacaccagctccatctccaataaagaatcctgccctaggaccactgggaacatgttgaag |
34632061 |
T |
|
| Q |
512 |
gtgtctctaccatgcaaagaagcatcacacatatgaaaattaaattgtaattctatataattatttattatcgatattccatcatgtggtgagagaaacc |
611 |
Q |
| |
|
|||||||||||||| ||| || ||||| |||||||||| ||||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
34632062 |
gtgtctctaccatggaaacaaacatcatacatatgaaagttaaattgtaattatttataattatttactatcgatattcaatcatgtggtgagagaaacc |
34632161 |
T |
|
| Q |
612 |
tgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttcccaatcattcttaatcattgggtcataagtaggctcgggtggct |
711 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
34632162 |
tgacaagcataaaccaatgtctcgatctgcaagcatgacaaagcctttgaacgttccaaatcattcttaatctttggatcataagtaggctcgggtggct |
34632261 |
T |
|
| Q |
712 |
gcactgcagacaaagaagatgtctc |
736 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
34632262 |
gcactgcagacaaggaagatgtctc |
34632286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 689; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 7 - 739
Target Start/End: Original strand, 26963686 - 26964418
Alignment:
| Q |
7 |
acaactgacactggaccccttctatcggtgattaatagcattacgtttatgttaataatatgataattacatcaaactatcaaaaaagctaaccatatct |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26963686 |
acaactgacactgaaccccttctatcggtgattaatagcattaagtttatgttaataatatgataattacatcaaactatcaaaaaagctaaccatatct |
26963785 |
T |
|
| Q |
107 |
taggactttcatttgcaaacccaaaatgcatatatacctgcaatgcaacttgcacccatatcatccagatctcttctcgcatcaaacttcaagtctgaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26963786 |
taggactttcatttgcaaacccaaaacacatatatacctgcaatgcaacttgcacccatatcatccaaatctcttctcgcatcaaacttcaagtctgaac |
26963885 |
T |
|
| Q |
207 |
caacagaaatccacctgcataagatcaatggaacatgaaaataggaattaaaagatcaactgcaagttgaaattacaaacatgtgtgcatgcatagtaaa |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26963886 |
caacagaaatccacctgcgtaagatcaatggaacatgaaaatttgaattaaaagatcaactgcaagttgaaattacaaacatgtatgcatgcatagtaaa |
26963985 |
T |
|
| Q |
307 |
gcacattgaaaagtgaatgtttatctaaattcataaaagcatgcccatgattacatgtacaaattgtgacctaaacttacaaggcttttctccttccatg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26963986 |
gcacattgaaaagtgaatgtttatctaaattcataaaagcatgcccatgattacatgtacaaattgtgacctaaacttacaaggcttttctccttccatg |
26964085 |
T |
|
| Q |
407 |
gtgccagttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaagaaagaatcctgccctagcaccactgggaatgtgt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26964086 |
gtgccagttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaagaaagaatcctgccctagcaccactgggaatgtgt |
26964185 |
T |
|
| Q |
507 |
tgaaggtgtctctaccatgcaaagaagcatcacacatatgaaaattaaattgtaattctatataattatttattatcgatattccatcatgtggtgagag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26964186 |
tgaaggtgtctctaccatgcaaagaagcatcacacatatgaaaattaaattgtaattctatataattatttattatcgatattcaatcatgtggtgagag |
26964285 |
T |
|
| Q |
607 |
aaacctgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttcccaatcattcttaatcattgggtcataagtaggctcggg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26964286 |
aaacctgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttccaaatcattcttaatcattgggtcataagtaggctcggg |
26964385 |
T |
|
| Q |
707 |
tggctgcactgcagacaaagaagatgtctctac |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
26964386 |
tggctgcactgcagacaaagaagatgtctctac |
26964418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 739
Target Start/End: Original strand, 26855519 - 26856251
Alignment:
| Q |
7 |
acaactgacactggaccccttctatcggtgattaatagcattacgtttatgttaataatatgataattacatcaaactatcaaaaaagctaaccatatct |
106 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||| |||| | |||||||||| ||||||||||||||||||||| |||| ||| ||| ||||| |
|
|
| T |
26855519 |
acaactgaaactgaaccccttctatccctgattaataccatttcttttatgttaacggtatgataattacatcaaactaccaaagaagttaattatatca |
26855618 |
T |
|
| Q |
107 |
taggactttcatttgcaaacccaaaatgcatatatacctgcaatgcaacttgcacccatatcatccagatctcttctcgcatcaaacttcaagtctgaac |
206 |
Q |
| |
|
|||||||| ||| || |||||||| || ||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||||||||| | |
|
|
| T |
26855619 |
taggacttcagtttacagacccaaaaagc----atacctggaatgcaacttgcacccatatcatccaaatctctcctggcatcaaacttcaagtctgagc |
26855714 |
T |
|
| Q |
207 |
caacagaaatccacctgcataagatcaatggaacatgaaaataggaattaaaagatcaactgcaagttgaaattacaaac----atgtgtgcatgcatag |
302 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||| |||||||| | |
|
|
| T |
26855715 |
caacagaaatccacctgcgtaagatcattggaacatgaaaataggaattaaaagacccactccaagttgaaattacaaacaagtatgtatgcatgcacaa |
26855814 |
T |
|
| Q |
303 |
taaagcacattgaaaagtgaatgtttatctaaattcataaaagcatgcccatgattacatgtacaaattgtgacctaaacttacaaggcttttctccttc |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
26855815 |
taaagcacgttgaaaagtgaatgtttatctcaattcttaaaagcatgcccatgattacaagcacaaattgtgacttaaacttacagggtttttctccttc |
26855914 |
T |
|
| Q |
403 |
catggtgccagttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaagaaagaatcctgccctagcaccactgggaat |
502 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26855915 |
catggtgccagttctcccagattagcccagcgactgttcgacctttacctacaccagctccatctccaataaagaatcctgccctaggaccactgggaac |
26856014 |
T |
|
| Q |
503 |
gtgttgaaggtgtctctaccatgcaaagaagcatcacacatatgaaaattaaattgtaattctatataattatttattatcgatattccatcatgtggtg |
602 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| |||||||||| ||||||||||||| | |||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
26856015 |
atgttgaaggtgtctctaccatggaaacaaacatcatacatatgaaagttaaattgtaattatttataattatttactatcgatattcaatcatgtggtg |
26856114 |
T |
|
| Q |
603 |
agagaaacctgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttcccaatcattcttaatcattgggtcataagtaggct |
702 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
26856115 |
agagaaacctgacaagcataaaccaatgtctcgatctgcaagcatgacaaagcctttgaacgttccaaatcattcttaatctttggatcataagtaggct |
26856214 |
T |
|
| Q |
703 |
cgggtggctgcactgcagacaaagaagatgtctctac |
739 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26856215 |
cgggtggctgcactgcagacaaggaagatgtctctac |
26856251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 373 - 519
Target Start/End: Original strand, 18471710 - 18471856
Alignment:
| Q |
373 |
tgacctaaacttacaaggcttttctccttccatggtgccagttctcccagattatcccagcaactgttcgacctttacctacaccagctccatctccaag |
472 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18471710 |
tgaccaaaacttacaatgcttttctccttccatggtgccagttctcccaaattagacctgcaattgttcgacctttacctacaccagctccgtctccaat |
18471809 |
T |
|
| Q |
473 |
aaagaatcctgccctagcaccactgggaatgtgttgaaggtgtctct |
519 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||| ||||||||||||| |
|
|
| T |
18471810 |
aaagaatcctgctctagctccactggggaggtgctgaaggtgtctct |
18471856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 605 - 736
Target Start/End: Original strand, 18471929 - 18472060
Alignment:
| Q |
605 |
agaaacctgacaagcatagaccaatgtctcaatctgcaagcatgacaaagcctttgaacgttcccaatcattcttaatcattgggtcataagtaggctcg |
704 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| || || ||| | |||| ||||| ||||| || |
|
|
| T |
18471929 |
agaaacctgacaagcatagaccaaggtctcaatttgcaagcatgacaaagcctttgaactttccagattatctttagtttttggatcataggtaggatcc |
18472028 |
T |
|
| Q |
705 |
ggtggctgcactgcagacaaagaagatgtctc |
736 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |
|
|
| T |
18472029 |
ggtggttgcactgcagacaaggaagatgtctc |
18472060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 18471446 - 18471523
Alignment:
| Q |
156 |
ttgcacccatatcatccagatctcttctcgcatcaaacttcaagtctgaaccaacagaaatccacctgcataagatca |
233 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18471446 |
ttgcacccgcatcatccaagtctcttctagcgtcaaacttcaagtctgaaccaacagaaatccacctgtgtaagatca |
18471523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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