View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-11 (Length: 730)
Name: NF1717-Insertion-11
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 134 - 641
Target Start/End: Complemental strand, 10034963 - 10034446
Alignment:
| Q |
134 |
cacaatttaaaacccttaatgtgtattatatacaactaataaatgtccattaacatttattttcctttcattctttacaaactaaccaaacagttgtttc |
233 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10034963 |
cacaatataaaatccttaatgtgtattatatacaactaataaatgtccatttacatttattttcctttcattctttacaaactaaccaaacagttgtttc |
10034864 |
T |
|
| Q |
234 |
aaaatgataggcattagattaatactaatccaataccattcattaatttaagtatttaatcaacggattaaaacataataatacttttggcatttgaaca |
333 |
Q |
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| T |
10034863 |
aaaatgataggcattagattaatactaatccaataccattcattaatttaagtatttaatcaacggattaaaacataataatacttttggcatttgaaca |
10034764 |
T |
|
| Q |
334 |
tcatgcactctcataatcaagttttctgttaattgcaaccttaactaagagaggaaaagaaataaacataaaaatattcttgtttcttcttggttttctc |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10034763 |
tcatgcactctcataatcaagttttctgttaattgcaaccttaattaagagaggaaaagaaataaacataaaaatattcttgtttcttcttggttttctc |
10034664 |
T |
|
| Q |
434 |
tatttttcataattttcctcctccttgtgattattttttatgatcat----------tgttatgcataataaataaaattaatacaaagaaaatgagaga |
523 |
Q |
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| T |
10034663 |
tatttttcataattttcctcctccttgtgattattttttatgatcattgttttccattgttatgcataataaataaaattaatacaaagaaaatgagaga |
10034564 |
T |
|
| Q |
524 |
gataataagcattcatattggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattcaacctgatggaaccatg |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10034563 |
gataataagcattcatattggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattcaacctgatggaaccatg |
10034464 |
T |
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| Q |
624 |
cccaggtttatatcctaa |
641 |
Q |
| |
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| T |
10034463 |
cccaggtttatatcctaa |
10034446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 10035342 - 10035222
Alignment:
| Q |
7 |
aaaaatgataagttataggctacttgaattaataagctattaattataaaatataa----gttcatgaaaaaatgttagttaacaaatgagtccttttta |
102 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||| | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
10035342 |
aaaaatgataagttataggctacttgaattgataagctattaattaaaaaaaaaaaaaaagttcatgaaaaaatgttagttaacaaatgagtccttttta |
10035243 |
T |
|
| Q |
103 |
gacatatgatttgattagcta |
123 |
Q |
| |
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| T |
10035242 |
gacatatgatttgataagcta |
10035222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 511 - 617
Target Start/End: Original strand, 33268381 - 33268487
Alignment:
| Q |
511 |
agaaaatgagagagataataagcattcatattggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattcaacc |
610 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
33268381 |
agaagatgagagagataataagtattcatattggacaagctggaattcaagtagggaattcatgttgggagctttattgtcttgagcatggaattcaacc |
33268480 |
T |
|
| Q |
611 |
tgatgga |
617 |
Q |
| |
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||||||| |
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| T |
33268481 |
tgatgga |
33268487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 613
Target Start/End: Complemental strand, 35670767 - 35670667
Alignment:
| Q |
513 |
aaaatgagagagataataagcattcatattggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattcaacctg |
612 |
Q |
| |
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||||||||||| || || || ||||| || || ||||| ||||| || || |||||||| || |||||||| || ||||| |||||||||||||| |||| |
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| T |
35670767 |
aaaatgagagaaattatcagtattcacatcggtcaagccggaatccaagtcggtaattcttgctgggagctttactgtctcgaacatggcattcagcctg |
35670668 |
T |
|
| Q |
613 |
a |
613 |
Q |
| |
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| |
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|
| T |
35670667 |
a |
35670667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 607
Target Start/End: Complemental strand, 40379434 - 40379367
Alignment:
| Q |
540 |
attggacaagctggaattcaggttggtaattcatgttgggagctatattgtcttgaacatggcattca |
607 |
Q |
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| T |
40379434 |
attggtcaagccggtattcaagtcggtaatgcttgttgggagctttattgccttgaacatggcattca |
40379367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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