View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717-Insertion-12 (Length: 683)

Name: NF1717-Insertion-12
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717-Insertion-12
NF1717-Insertion-12
[»] chr2 (1 HSPs)
chr2 (8-683)||(39937245-39937917)
[»] chr1 (1 HSPs)
chr1 (244-321)||(43661297-43661374)


Alignment Details
Target: chr2 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Complemental strand, 39937917 - 39937245
Alignment:
Q  8 atatatgtgtccttgaacaggcttattgcatcaaattaaactttacaatatagtttaatttaaatgaataagtgcaaggttttatnnnnnnnggtacgca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  39937917 atatatgtgtccttgaacaggcttattgcatcaaattaaactttacaatatagtttaatttaaatgaataagtgcaaggttttataaaaaa-ggtacgca 39937819  T
Q  108 atcgtgatctagatcccgataccaaggtttttggtgttaatgtgactgcaattgacgttgcactatcatatttgactacgattttccataatatcaagta 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39937818 atcgtgatctagatcccgataccaaggtttttgatgttaatgtgactgcaattgacgttgcactatcatatttgactacgattttccataatatcaagta 39937719  T
Q  208 gtgacacgagtgttacctcgactttaccttaaacctttgcatatgcgatcacacttaatcaataactcacattatataaggttcaagtatgtgaaatgga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39937718 gtgacacgagtgttacctcgactttaccttaaacctttgcatatgcgatcacacttaatcaataactcacattatataaggttcaagtatgtgaaatgga 39937619  T
Q  308 attactagttaagtggaagaatatgaagtgaactgaattgtaacttgtggcaggggcaatagcaagagctccaagatatataatcctaagaaatttggag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  39937618 attactagttaagtggaagaatatgaagtgaactgaattgtaacttgtggcaggggcaatagcaagaactccaagatata--atcctaagaaatttggag 39937521  T
Q  408 aaaaaacataatcctaagaaatttggagaaaaaacaaaatgttgtgaatttgtgtttaatatggacattaattagtaaaattgtctagctaagtggatta 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39937520 aaaaaacataatcctaagaaatttggagaaaaaacaaaatgttgtgaatttgtgtttaatatggacattaattagtaaaattgtttagctaagtggatta 39937421  T
Q  508 tatgattgtgaatttgtgattgtcttaccttggtctgcccattgggtattggagaatataattcaaaagggcaatgcatagagtagcacagaaagacatt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39937420 tatgattgtgaatttgtgattgtcttaccttggtctgcccattgggtattggagaatataattcaaaagggcaatgcatagagtagcacagaaagacatt 39937321  T
Q  608 atagcatattctttcccaacaaaagttaatttattggagaaaataacatttttgttattctgtaaagacattatag 683  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39937320 atagcatattctttccaaacaaaagttaatttattggagaaaataacatttttgttattctgtaaagacattatag 39937245  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 43661297 - 43661374
Alignment:
Q  244 ttgcatatgcgatcacacttaatcaataactcacattatataaggttcaagtatgtgaaatggaattactagttaagt 321  Q
    ||||||||| |||| || || |||||||| |||||||| |||||||||||  |||||||||  | |||||| ||||||    
T  43661297 ttgcatatgtgatcgcaattgatcaataagtcacattaaataaggttcaatcatgtgaaattaagttactaattaagt 43661374  T

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