View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1717-Insertion-15 (Length: 557)
Name: NF1717-Insertion-15
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 49204978 - 49205354
Alignment:
| Q |
8 |
atctctgcctccttagcccagaagttgcgtaccttcgcttccatgaacaaacttcacacccttttccccaatacatgtagcattaaagtgtgctaccacg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
49204978 |
atctctgcctccttagcccagaagttgcgtaccttggcttccatgaaccaacttcacacccttttccccagtacgtgtagcattaaagtgtgcttccacg |
49205077 |
T |
|
| Q |
108 |
ggaaacaccgcaattttaactcattcttggttagtttgatataaagctacattatatcctcgttaacaatggttttcataccttcgatattttctcaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| || |
|
|
| T |
49205078 |
ggaaacaccgcaattttaactcattcttggttagtttgatataaagctacattgtatcctcgttaacaatggctttcataccttcgatattttatcagca |
49205177 |
T |
|
| Q |
208 |
acaaatcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaacatacacctttttcattaagacctaa |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49205178 |
acaaatcaataaaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaacatacacctttttcattaagacctaa |
49205277 |
T |
|
| Q |
308 |
ctccgtccaggcctcaattttataaccattaaaaggtaacacactacaaatcaaggacagggtgtaggattagtgga |
384 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49205278 |
ctccgtccaggcctcaactttataaccattaaaaggtaacacactacaaatcaaggacagggtgtaggattagtgga |
49205354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 8333136 - 8333067
Alignment:
| Q |
213 |
tcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaac |
282 |
Q |
| |
|
|||||| |||||| ||| | ||||||||||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
8333136 |
tcaatataagaggtctcaacttcaaaatcttgtgcacccaccatctcctagagtttatctttgtaggaac |
8333067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 270
Target Start/End: Complemental strand, 32191801 - 32191640
Alignment:
| Q |
109 |
gaaacaccgcaattttaactcattcttggttagtttgatataa-agctacattatatcctcgttaacaatggttttcataccttcgatattttc-tcaac |
206 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||| | ||| | ||| ||||| |||||||| | ||||||||||| ||||| || ||||| |
|
|
| T |
32191801 |
gaaacaccacaatttaaactcatcactggttagtttgatatcacagc-atattgcatccttcttaacaatagatttcatacctttgatatgctcctcaac |
32191703 |
T |
|
| Q |
207 |
aacaaatcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttat |
270 |
Q |
| |
|
|| | |||||| |||| |||||||||||||||| ||| |||||||||||| || |||||||| |
|
|
| T |
32191702 |
aatag-tcaatataagatgactctatttcaaaattgtgttcaccctccatcttcacgagtttat |
32191640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University