View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-18 (Length: 424)
Name: NF1717-Insertion-18
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 15799004 - 15798588
Alignment:
| Q |
8 |
tgactgtactgacaatatgaagtttgtccaaatggaaggtctaaccttggactagattaagagtggcagaaatataacccaagacagaagatgctaactt |
107 |
Q |
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| T |
15799004 |
tgactgcactgacaatatgaagtttgtccaaatggaaggtctaaccttggacttgattaagagtggcagaaatataacccaagacagaagatgctaactt |
15798905 |
T |
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| Q |
108 |
ttggtatgcttttcagcacgcccgtgtatttaataacagccttttctcatctctttgtaacggtttcatacttggtctttacttttccctctgagattgg |
207 |
Q |
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| T |
15798904 |
ttggtatgcttttcggcacgcccgtgtatttaataacagccttttctcatctctttgtaacggtttcatacttggtctttacttttccctctgagattgg |
15798805 |
T |
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| Q |
208 |
aaaccagaaccttacttaaagtgaagtgctggattcgaattagtgacagttgccacattatgtattgacgccgccttggcttctgattgtggccgctact |
307 |
Q |
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| T |
15798804 |
gaaccagaaccttacttaaagtgaagtgctggattcgaattagtgacagttgccacattatgtattgacgccgccttggcttctgattgtggccgctaca |
15798705 |
T |
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| Q |
308 |
ttcttaagtcaactcccccaccctcctccaaattcaactcacttcttagtgatccacattcttttctagaattgttttcgaaacaaccctcttatgtttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15798704 |
ttcttaagtcaactcccccaccctcctccaaattcaactcacttcttagtgatccacgttcttttctagaattgttttcgaaacaaccctcttatgtttt |
15798605 |
T |
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| Q |
408 |
tcctatgcttccaacaa |
424 |
Q |
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| T |
15798604 |
tcctatgtttccaacaa |
15798588 |
T |
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