View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-19 (Length: 349)
Name: NF1717-Insertion-19
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-19 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 45269872 - 45270199
Alignment:
| Q |
8 |
ctctgtagcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacattagttta |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45269872 |
ctctatagcaggagaaccttttaatttattatgagcccaaacgatggattctataagttcttgccaataaccacgcccgatgaatagaaacattagttta |
45269971 |
T |
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| Q |
108 |
attttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatat |
207 |
Q |
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| T |
45269972 |
attttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatat |
45270071 |
T |
|
| Q |
208 |
actggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggca |
307 |
Q |
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| T |
45270072 |
actggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggca |
45270171 |
T |
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| Q |
308 |
tactctgcaaagtaacacgtgttttcat |
335 |
Q |
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| T |
45270172 |
tactctgcaaagtaacacgtgttttcat |
45270199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 45273442 - 45273744
Alignment:
| Q |
16 |
caggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacattagtttaattttcaa |
115 |
Q |
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| T |
45273442 |
caggagcaacttttaatttattatgagcccaaacgatggattcaataagtttatgccaataaccacggccgctgaatagaaacattagtttaattttcaa |
45273541 |
T |
|
| Q |
116 |
gctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcgg |
215 |
Q |
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| T |
45273542 |
gctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttg------------ggtccagcttggagccatataccagctg |
45273629 |
T |
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| Q |
216 |
tgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgc |
315 |
Q |
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| T |
45273630 |
tgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgc |
45273729 |
T |
|
| Q |
316 |
aaagtaacacgtgtt |
330 |
Q |
| |
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| T |
45273730 |
atagtaacatgtgtt |
45273744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 103 - 330
Target Start/End: Original strand, 45281773 - 45281988
Alignment:
| Q |
103 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | |||| |
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| T |
45281773 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagc |
45281860 |
T |
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| Q |
203 |
catatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgt |
302 |
Q |
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| T |
45281861 |
catataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgt |
45281960 |
T |
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| Q |
303 |
tggcatactctgcaaagtaacacgtgtt |
330 |
Q |
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| T |
45281961 |
ttgcatactctgcatagtaacatgtgtt |
45281988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 103 - 334
Target Start/End: Original strand, 45293113 - 45293332
Alignment:
| Q |
103 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagc |
202 |
Q |
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|||||||||||||||||||||||||||||| | |||||||| |||| | ||||||||| |||| ||||||||| ||||| | |||| |
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| T |
45293113 |
gtttaattttcaagctttgaagccaaggtaattaggaacattaagaccagtcaaccattcggctgcggacttgggt------------ccagcttggagc |
45293200 |
T |
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| Q |
203 |
catatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgt |
302 |
Q |
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| T |
45293201 |
cataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgt |
45293300 |
T |
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| Q |
303 |
tggcatactctgcaaagtaacacgtgttttca |
334 |
Q |
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| T |
45293301 |
tggcgtactctgcatagtaacatgtgttttca |
45293332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 103 - 334
Target Start/End: Original strand, 45302073 - 45302292
Alignment:
| Q |
103 |
gtttaattttcaagctttgaagccaaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagc |
202 |
Q |
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| T |
45302073 |
gtttaattttcaagctttgaagccaaggtaattaggaacattaagaccagtcaaccattcggctgcggacttgggt------------ccagcttggagc |
45302160 |
T |
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| Q |
203 |
catatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgt |
302 |
Q |
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|||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
45302161 |
cataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattggcaccaggtccagtgt |
45302260 |
T |
|
| Q |
303 |
tggcatactctgcaaagtaacacgtgttttca |
334 |
Q |
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|||| ||||||||| ||||||| ||||||||| |
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| T |
45302261 |
tggcgtactctgcatagtaacatgtgttttca |
45302292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 13218295 - 13218205
Alignment:
| Q |
12 |
gtagcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacatta |
102 |
Q |
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| T |
13218295 |
gtagcaggagcaacttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacatta |
13218205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 54180853 - 54180929
Alignment:
| Q |
26 |
ttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacatta |
102 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
54180853 |
ttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacatta |
54180929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 239414 - 239504
Alignment:
| Q |
12 |
gtagcaggagaaccttttaatttattatgagcccaaacgatggattctataaattcttgccaataaccacgcccgatgaatagaaacatta |
102 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||| ||| |||||| |||||||| |
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| T |
239414 |
gtagcaggagcaacttttaatttgttatgagcccaaacgatagattcaatgagttcttgccaataaccacggccgctgaataaaaacatta |
239504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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