View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-23 (Length: 263)
Name: NF1717-Insertion-23
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-23 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 42949971 - 42950215
Alignment:
| Q |
7 |
accagatgctatgataaaacctaagttttgttttgaagaaggataataactaagttataattactcaagttccttcacggtcagtgtgctcaaggcatca |
106 |
Q |
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| T |
42949971 |
accagatgctaggataatacctaagttttgttttgaagaaggataataactaagttataattactcaagttccttcacagtcagtgtgctcaaggcatca |
42950070 |
T |
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| Q |
107 |
cccatcagctgcttaagtatatgatgatagttatgggcaatagttagattaacatggaaaacttcattgtcgccaagtaaattatatttgtatggaaact |
206 |
Q |
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| T |
42950071 |
cccatcagctgcttaagtatatgatgatagttatgggcaatagttagattaacatggaaaacttcattgtcaccaagtaaattatatttgtatggaaact |
42950170 |
T |
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| Q |
207 |
atctatatattcataatctatgaatttaaataatggtatggtata |
251 |
Q |
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| T |
42950171 |
atctatatattcataatctatcaatttaaataatggtatggtata |
42950215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 2851834 - 2851962
Alignment:
| Q |
134 |
tagttatgggcaatagttagattaacatggaaaacttcattgtcgccaagtaaattatatttgtatggaaactatctatatattcataatctatgaat-t |
232 |
Q |
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| T |
2851834 |
tagttatgggaaatagttagattaacacggagaacttcattgtcaccaagtaaattatatttgtatggaaacta--tatatattcatagtctaccaatct |
2851931 |
T |
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| Q |
233 |
taaataatggtatggtataattggtggcatg |
263 |
Q |
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| T |
2851932 |
aaaataatggtatggaatagttagtggcatg |
2851962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 2903866 - 2903994
Alignment:
| Q |
134 |
tagttatgggcaatagttagattaacatggaaaacttcattgtcgccaagtaaattatatttgtatggaaactatctatatattcataatctatgaat-t |
232 |
Q |
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| T |
2903866 |
tagttatgggaaatagttagattaacacggagaacttcattgtcaccaagtaaattatatttgtatggaaacta--tatatattcatagtctaccaatct |
2903963 |
T |
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| Q |
233 |
taaataatggtatggtataattggtggcatg |
263 |
Q |
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| T |
2903964 |
aaaataatggtatggaatagttagtggcatg |
2903994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 2851782 - 2851830
Alignment:
| Q |
109 |
catcagctgcttaagtatatgatgatagttatgggcaatagttagatta |
157 |
Q |
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| T |
2851782 |
catcaactgcttaagtatatgatgatagttatgggcaatagttagatta |
2851830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 2903814 - 2903862
Alignment:
| Q |
109 |
catcagctgcttaagtatatgatgatagttatgggcaatagttagatta |
157 |
Q |
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| T |
2903814 |
catcaactgcttaagtatatgatgatagttatgggcaatagttagatta |
2903862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 2851726 - 2851772
Alignment:
| Q |
37 |
ttttgaagaaggataataactaagttataattactcaagttccttca |
83 |
Q |
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| T |
2851726 |
ttttgaaaaaggataataaccaagttataattactcaagttctttca |
2851772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 2903758 - 2903804
Alignment:
| Q |
37 |
ttttgaagaaggataataactaagttataattactcaagttccttca |
83 |
Q |
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| T |
2903758 |
ttttgaaaaaggataataaccaagttataattactcaagttctttca |
2903804 |
T |
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