View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-26 (Length: 99)
Name: NF1717-Insertion-26
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-26 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0274 (Bit Score: 83; Significance: 7e-40; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 5991 - 6081
Alignment:
| Q |
9 |
atacaataacaataaattagtgataccatgccatgagtctccaatacaaactccccgctaagcaaagtatgaacaacaccgcgtagacctc |
99 |
Q |
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| T |
5991 |
atacaataacaatacattagtgataccatgccatgagtctccaatacaaactccccgctaagcaaagtatgaacaacaccgcatagacctc |
6081 |
T |
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Target: scaffold0271 (Bit Score: 83; Significance: 7e-40; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 83; E-Value: 7e-40
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 3300 - 3210
Alignment:
| Q |
9 |
atacaataacaataaattagtgataccatgccatgagtctccaatacaaactccccgctaagcaaagtatgaacaacaccgcgtagacctc |
99 |
Q |
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| T |
3300 |
atacaataacaatacattagtgataccatgccatgagtctccaatacaaactccccgctaagcaaagtatgaacaacaccgcatagacctc |
3210 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 41418230 - 41418279
Alignment:
| Q |
39 |
ccatgagtctccaatacaaactccccgctaagcaaagtatgaacaacacc |
88 |
Q |
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| T |
41418230 |
ccatgagtctccaatccaaattacccgctaagcaaagtataaacagcacc |
41418279 |
T |
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