View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-27 (Length: 107)
Name: NF1717-Insertion-27
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-27 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 42055953 - 42056052
Alignment:
| Q |
8 |
gcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattacca |
107 |
Q |
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| T |
42055953 |
gcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattacca |
42056052 |
T |
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Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 42072155 - 42072254
Alignment:
| Q |
8 |
gcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattacca |
107 |
Q |
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| T |
42072155 |
gcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattacca |
42072254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-45
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 42081103 - 42081202
Alignment:
| Q |
8 |
gcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattacca |
107 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42081103 |
gcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattacca |
42081202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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