View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717-Insertion-30 (Length: 902)

Name: NF1717-Insertion-30
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717-Insertion-30
NF1717-Insertion-30
[»] chr7 (1 HSPs)
chr7 (8-902)||(44038200-44039094)


Alignment Details
Target: chr7 (Bit Score: 765; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 8 - 902
Target Start/End: Complemental strand, 44039094 - 44038200
Alignment:
Q  8 tgaactagagaaagcacgctcatgctctttcgaaggttgaaagctcttttaaatccgaagattctggtttgcgtttgtaaccctctgtatttgttattcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44039094 tgaactagagaaagcacgctcatgctctttcgaaggttgaaagctcttttaaatccgaagattctggtttgcgtttgtaaccctctgtatttgttattcg 44038995  T
Q  108 aacacataaatcaaagctaaaacattgaccaatttttagttttgtccaactttgattattccagaataattgtaggaaacttctaaacataaaatagaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44038994 aacacataaatcaaagctaaaacattgaccaatttttagttttctccaactttgattattccagaataattgtaggaaacttctaaacataaaatagaca 44038895  T
Q  208 attgtgttatttatgaatgtgtttaaacgtcggatccaagaagagaaaaatgataaaagggagataataaataatataaatatacggtattgatgtcgga 307  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  44038894 attgtgttatttatgaatgagtttaaacgtcggatccaagaagagaaaaatgattaaagggagataaaaaataatataaatatacggtattgatgtcgga 44038795  T
Q  308 ttttgtgtaagaaaattttctcttaagataatggaaacactttcacctaataatagttttacctaataggcatgccaacctcaagctactgcaaggggaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44038794 ttttgtgtaagaaaattttctcttaagataatggaaacactttcacctaataatagttttacctaataggcatgccaacctcaatctactgcaaggggaa 44038695  T
Q  408 gcaccggactacaccattacaaatgatatgatttacattacaggtctaaatcgcgataacttaaagcattttagttgctttaagggaaatttagcgaaat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44038694 gcaccggactacaccattacaaatgatatgatttacattacaggtctaaatcgcgataacttaaagcattttagttgcgttaagggaaatttagcgaaat 44038595  T
Q  508 g-aattcaaatccagattctttgtacaaatgtagagacatatttcttagttaggtaaaaccatatgatgataaaactcttactcaaaacttatagacatt 606  Q
    | ||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44038594 gaaattcaaatccgggttctttgtgcaaatgtagagacagatttcttagttaggtaaaaccatatgatgataaaactcttactcaaaacttataaacatt 44038495  T
Q  607 tttatggttaaatttaaacactgtacaactaattaagctggaaggtattcataccatcttagtgtgtgtttagtcaaatatttctggttgcttgacctct 706  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44038494 tttatggttaaattcaaacactgtacaactaattaagctggaaggtattcataccatcttagtgtctgtttagtcaaatatttctggttgcttgacctct 44038395  T
Q  707 ttttctaattatcattgaaaattattttacnnnnnnnnnnggtgctaatttagtctattaatttattggtataattgtatttttcgtnnnnnnntattta 806  Q
    |||||||| |||||||||||||||||||||          |||||||||||||||||||||||| ||||||||||||||||||||||       ||||||    
T  44038394 ttttctaa-tatcattgaaaattattttacttttttttttggtgctaatttagtctattaattttttggtataattgtatttttcgtcccctcctattta 44038296  T
Q  807 tcatgttcacagaaaaataatcaatgcatttgacaattcaaagagagtcttataaaaggaataaagagaaactcaaacgaattttatatttaacga 902  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44038295 tcatttccacagaaaaataatcaatgcatttgacaattcaaagagagtcttataaaaggaataaagagaaactcaaacgaattttatatttaacga 44038200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University