View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-4 (Length: 813)
Name: NF1717-Insertion-4
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-4 |
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| [»] chr2 (8 HSPs) |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 417 - 813
Target Start/End: Original strand, 824782 - 825178
Alignment:
| Q |
417 |
taatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtactggatttggtagcaca |
516 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
824782 |
taatttaggtgaatcaaccacaacgcccttatgatgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcaca |
824881 |
T |
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| Q |
517 |
actgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgtttaagtttaagaatcgtatttggtttatannnnnnnggtagtacagcc |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
824882 |
actgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgtttaagtttaagaatcgtatttggtttatctttttttggtagtacagcc |
824981 |
T |
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| Q |
617 |
gcaatgtgctgatgttttgttttatttcacgtgtgctattaataggaggcaatgtggaatggaagaagaagacaatgaaagttgggtctattccgcaatg |
716 |
Q |
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| T |
824982 |
gcaatgtgctaatgttttgttttatttcacgtgtgctattaataggaggcaatgtggaatggaagaagaagatgatgaaagttgggtctattccgcaatg |
825081 |
T |
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| Q |
717 |
catgtcatcctaccttagaacttgcactatttggaacgtttcaggcctccaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaa |
813 |
Q |
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| T |
825082 |
catgtcatcataccttagaacttgcactatttggaacgtttcaggcctacaatgtgagcttttgttatcaaaatatattttgaaaaatgccaaaaaa |
825178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 824398 - 824782
Alignment:
| Q |
8 |
agacttacccaaattgacaagagcatatatgaatcaatgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaa |
107 |
Q |
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| T |
824398 |
agacttacccaaattgacaagagcatatatgaatcaatgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaa |
824497 |
T |
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| Q |
108 |
tccacattgtacccaacacattatgaatagtatgcatgttatctcgatatatgttgaattaacttttcatatcgaagaccttt----------------- |
190 |
Q |
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| T |
824498 |
tccacattgtacccaacacattataaatagtatgcatgttacctcgatatatgttgaattaacttttcatatcgaagaccttttcggtgtttcatacatg |
824597 |
T |
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| Q |
191 |
tcggtgtttaatacgttgggacatgtgattacatttgataattctgttttctctnnnnnnnttaccaatatctgtgttaacaagtcatatgatgtattag |
290 |
Q |
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| T |
824598 |
tcggtgtttaatacgttgggacatgtgattacatttgataattctgttttctctaaaaaaattaccaatatctgtgttaacaagtcatatgatgtattag |
824697 |
T |
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| Q |
291 |
tgtttcatagagttagattaaatgcataatacactgattgaatgggttggaaaacaaagca----aaaatgtgatttatctgcgt |
371 |
Q |
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| T |
824698 |
tgtttcatagagttagattaaatgcataatacactgattgaatgggatggaaaacaaagcaaattaaaatgtgatttatctgcgt |
824782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 391 - 568
Target Start/End: Complemental strand, 989950 - 989773
Alignment:
| Q |
391 |
ctgatttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctc |
490 |
Q |
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|||||||||| |||||||||| ||||||||||||| ||| | | |||||||||| || ||||||||| | |||||||||||||||||| |||||||| |
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| T |
989950 |
ctgatttgatagtgtgtctttgtacataatttaggcaaataagctgcagcgcccttgtgttgacattcccatgtttcataatttgacccacttggagctc |
989851 |
T |
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| Q |
491 |
cactatgtactggatttggtagcacaactgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgt |
568 |
Q |
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| T |
989850 |
tacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcaggtttgt |
989773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 1012268 - 1012172
Alignment:
| Q |
391 |
ctgatttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggag |
487 |
Q |
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| T |
1012268 |
ctgaattgatagtgtgtctttttacattatttaggtgaatcggctacagctcccttatgatgacatttatatctttcataatttgacccacttggag |
1012172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 514 - 596
Target Start/End: Original strand, 410248 - 410333
Alignment:
| Q |
514 |
acaactgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgt---ttaagtttaagaatcgtatttggtttat |
596 |
Q |
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| T |
410248 |
acaagtgctccaccattgccctaagcttcaaaatcttgaactttatcgggtttgtttgttaaatttaagaatcatatttgatttat |
410333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 596
Target Start/End: Original strand, 821147 - 821227
Alignment:
| Q |
519 |
tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttg---tttaagtttaagaatcgtatttggtttat |
596 |
Q |
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| T |
821147 |
tgctccaccattgccctaagcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcctatttgatttat |
821227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 394 - 477
Target Start/End: Original strand, 1043976 - 1044059
Alignment:
| Q |
394 |
atttgatggtgtgtctttctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgac |
477 |
Q |
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| T |
1043976 |
atttgatagtgcatctttctacataatttaggtgaatcagttgcagcgtccttatgatgacatttatatctttcgtaatttgac |
1044059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 570
Target Start/End: Complemental strand, 965532 - 965481
Alignment:
| Q |
519 |
tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgttt |
570 |
Q |
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| T |
965532 |
tgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgttt |
965481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 800
Target Start/End: Complemental strand, 5817 - 5746
Alignment:
| Q |
729 |
ccttagaacttgcactatttggaacgtttcaggcctccaatgtgagcttttgttatcaaaatatattttgaa |
800 |
Q |
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| T |
5817 |
ccttagaacttgcacttttggggacttctcaggcctacaatgtgagcttcagttagcaaaatatattttgaa |
5746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 6133 - 6057
Alignment:
| Q |
417 |
taatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgacccacctggagctccac |
493 |
Q |
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| T |
6133 |
taatttaggtgaatcagccacaaggatcttatggtgatatttctatctttcataatttgacccacttggaactccac |
6057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 570
Target Start/End: Complemental strand, 10116819 - 10116763
Alignment:
| Q |
514 |
acaactgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgttt |
570 |
Q |
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| T |
10116819 |
acaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgttt |
10116763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 32246796 - 32246865
Alignment:
| Q |
411 |
tctacataatttaggtgaatcaaccacagcgcccttatgatgacattcctacctttcataatttgaccca |
480 |
Q |
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| T |
32246796 |
tctacataattcaggcgaatcaacttcaacacccttacgatgatattcctatttttcataatttgaccca |
32246865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 596
Target Start/End: Original strand, 36199114 - 36199190
Alignment:
| Q |
519 |
tgctccaccacttccctaagcttcagaatcttgaactttatcgggtttgtttaagtttaagaatcgtatttggtttat |
596 |
Q |
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| T |
36199114 |
tgcttcaccactgccctaaacttcaaattcttgaactttaccaggtttg-ttaagattaagaattgtatttagtttat |
36199190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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