View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1717-Insertion-7 (Length: 870)
Name: NF1717-Insertion-7
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1717-Insertion-7 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0504 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 414 - 870
Target Start/End: Original strand, 54632233 - 54632689
Alignment:
| Q |
414 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632233 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
54632332 |
T |
|
| Q |
514 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttaccgacccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaag |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632333 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttaccgacccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaag |
54632432 |
T |
|
| Q |
614 |
caatatgagatagttttggtcaatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaa |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632433 |
caatatgagatagttttggtcaatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaa |
54632532 |
T |
|
| Q |
714 |
atttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatctttatacttatttgaaaatcagtgactttgggcaattctaattctgaattctgatg |
813 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632533 |
atttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatg |
54632632 |
T |
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| Q |
814 |
tcgtaccgagcatattgaaatggccatagccggttttggccatcatttaccatttac |
870 |
Q |
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| T |
54632633 |
tcgtaccgagcatattgaaatggccatagccagttttggccatcatttaccatttac |
54632689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 54631801 - 54632201
Alignment:
| Q |
8 |
aaggataaggagaaggagacgttarctgtttttgatgtgttgaaatttcttgcgaagacttctgttaaagaagatgatggtcttactttgttggaaactt |
107 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631801 |
aaggagaaggagaaggagacgttaactgtttttgatgtgttgaaatttcttgcgaagacttctgttaaagaagatgatggtcttactttgttggaaactt |
54631900 |
T |
|
| Q |
108 |
taaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactcttcaagttctaggtgaataa-------------ct |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |
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| T |
54631901 |
taaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatgaaatctgaactcttcaacttctaggtgaagaagttcttttcttgact |
54632000 |
T |
|
| Q |
195 |
gactttttgaggacattgacagtgctttcatggaaaattctcaatagtatatgttgtccttctactacttaattgtattttgatattaacctatgatgat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632001 |
gactttttgaggacattgacagtgctttcatggaaaattctcaatagtatatgttgtccttctactacttaattgtattttgatattaacctatgatgat |
54632100 |
T |
|
| Q |
295 |
attttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgtaactgtggttcagaacttaacctgttatgttaacaatctccttgc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632101 |
attttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgtaactgtggttcagaacttaacctgttatgttaacaatctccttgc |
54632200 |
T |
|
| Q |
395 |
t |
395 |
Q |
| |
|
| |
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|
| T |
54632201 |
t |
54632201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 268 - 367
Target Start/End: Complemental strand, 52125432 - 52125333
Alignment:
| Q |
268 |
tgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgta-actgtggttcagaact |
366 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||||||||| |||||||| ||| | ||||||| |||||| |
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| T |
52125432 |
tgtattttgatgttaacggatgatgatattttatggtaggattcta-attctatcatgttttgaatgttatctatcactagtagaatgtggtttagaact |
52125334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 3e-81; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 561 - 868
Target Start/End: Complemental strand, 45313231 - 45312931
Alignment:
| Q |
561 |
acccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaagcaatatgagatagttttggtcaatgccatgcgtactcgtattaacaa |
660 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | || || ||||||||| |
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| T |
45313231 |
acccactgatgaatataaaataaagagatggttaacaatcaggtaagccaaagcaatatgagatggttttgttcaatgccatccatagtcatattaacaa |
45313132 |
T |
|
| Q |
661 |
tcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatcttt |
760 |
Q |
| |
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||||| |||||||||||||||| ||| |||| |||||||||||||||||||| |||||||||| ||||||| || |||| ||||||||||| | |
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|
| T |
45313131 |
tcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtg--------tgtaggtttcaaatctat |
45313040 |
T |
|
| Q |
761 |
atacttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgtcgtaccgagcatattgaaatggccata--gccggttttggccatca |
858 |
Q |
| |
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||| |||||||||||||||||| ||| || |||||| |||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||| |
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| T |
45313039 |
atatgtatttgaaaatcagtgac-ttgagctattctagttctgaattctgatgttgtacttagcatattgaaatggccatatttccagttttggccatca |
45312941 |
T |
|
| Q |
859 |
tttaccattt |
868 |
Q |
| |
|
|||||||||| |
|
|
| T |
45312940 |
tttaccattt |
45312931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 414 - 559
Target Start/End: Complemental strand, 45313418 - 45313279
Alignment:
| Q |
414 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
513 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
45313418 |
tctatcatgtctaacttagatattccttctttgtttatcttctaatt------ttatgtttatcacgtctaataatggcattagagtaaatcatccttaa |
45313325 |
T |
|
| Q |
514 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45313324 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
45313279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 45313595 - 45313481
Alignment:
| Q |
272 |
ttttgatattaacctatgatgatat------tttatggtaggattat----agtttctatcatcttttgaatgttgactatcacttgtaactgtggttca |
361 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
45313595 |
ttttgatattaacctatgatgatatgatatttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttca |
45313496 |
T |
|
| Q |
362 |
gaacttaacctgtta |
376 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
45313495 |
gaacttaacttgtta |
45313481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 39487232 - 39487130
Alignment:
| Q |
75 |
aagaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactctt |
174 |
Q |
| |
|
||||||||| || ||||||| || | |||||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| ||| |||| |
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|
| T |
39487232 |
aagaagatggtgttcttactgtggtcgaaactgggaagcgtgctggtattacttttcctcgtccaagctggtggccggacgatatgaaatccgaaatctt |
39487133 |
T |
|
| Q |
175 |
caa |
177 |
Q |
| |
|
||| |
|
|
| T |
39487132 |
caa |
39487130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 463 - 531
Target Start/End: Complemental strand, 45310405 - 45310338
Alignment:
| Q |
463 |
aatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaaagcacttaaatatttctt |
531 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||||||| || ||||||||| || |||||||| |
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|
| T |
45310405 |
aatgttatgtttatcacgtgtaataatggcaataaagtaaatcagcc-taaagcactaaattatttctt |
45310338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 7958 - 8059
Alignment:
| Q |
76 |
agaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatggaatctgaactcttc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||||| || |||||| | ||||||||| |||||||||||||| |
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|
| T |
7958 |
agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttggtggtcggacgatatgaaatctgaactcttc |
8057 |
T |
|
| Q |
176 |
aa |
177 |
Q |
| |
|
|| |
|
|
| T |
8058 |
aa |
8059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 8226 - 8267
Alignment:
| Q |
326 |
ttttgaatgttgactatcacttgtaactgtggttcagaactt |
367 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||||| |
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|
| T |
8226 |
ttttgaatgttgtctaacatttgtaactgtggttcagaactt |
8267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 18189389 - 18189535
Alignment:
| Q |
34 |
tgtttttgatgtgttgaaatttcttgcgaagacttctgttaaa---gaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaattt |
130 |
Q |
| |
|
|||||||||||| ||||||||||| || |||| |||| |||| ||||||||||||||||||||| |||||||| |||||||| ||||| |||| || |
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|
| T |
18189389 |
tgtttttgatgtattgaaatttctcgcagagacatctgataaaaaagaagatgatggtcttactttgctggaaactctaaagcgttctggtgttaattta |
18189488 |
T |
|
| Q |
131 |
cctcgtccgagctggtggcccgacgatatggaatctgaactcttcaa |
177 |
Q |
| |
|
|||||||| || |||||||| || |||||| ||||| |||||||||| |
|
|
| T |
18189489 |
cctcgtccaagttggtggccggaggatatgaaatctcaactcttcaa |
18189535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 18189720 - 18189767
Alignment:
| Q |
320 |
atcatcttttgaatgttgactatcacttgtaactgtggttcagaactt |
367 |
Q |
| |
|
||||| |||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
18189720 |
atcatgttttgaatgttggctaacatttgtaactgtggttcagaactt |
18189767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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