View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717-Insertion-8 (Length: 772)

Name: NF1717-Insertion-8
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717-Insertion-8
NF1717-Insertion-8
[»] chr4 (8 HSPs)
chr4 (338-762)||(10111424-10111845)
chr4 (8-345)||(10111061-10111399)
chr4 (713-772)||(13698392-13698451)
chr4 (713-772)||(21301987-21302046)
chr4 (713-772)||(40002123-40002182)
chr4 (713-772)||(54346257-54346316)
chr4 (707-772)||(36357189-36357254)
chr4 (713-772)||(8982439-8982498)
[»] chr5 (5 HSPs)
chr5 (713-772)||(13584871-13584930)
chr5 (713-772)||(17507956-17508015)
chr5 (713-772)||(24773511-24773570)
chr5 (713-772)||(41856473-41856532)
chr5 (713-772)||(42022866-42022925)
[»] chr8 (4 HSPs)
chr8 (707-772)||(19433322-19433387)
chr8 (707-772)||(19569472-19569537)
chr8 (713-772)||(21646236-21646295)
chr8 (713-772)||(32013580-32013639)
[»] scaffold0517 (1 HSPs)
scaffold0517 (713-772)||(1445-1504)
[»] scaffold0166 (1 HSPs)
scaffold0166 (713-772)||(15895-15954)
[»] scaffold0165 (1 HSPs)
scaffold0165 (713-772)||(14867-14926)
[»] scaffold0014 (1 HSPs)
scaffold0014 (713-772)||(29427-29486)
[»] chr7 (4 HSPs)
chr7 (713-772)||(33241057-33241116)
chr7 (713-772)||(47996854-47996913)
chr7 (713-757)||(17498791-17498835)
chr7 (713-757)||(17554379-17554423)
[»] chr6 (3 HSPs)
chr6 (713-772)||(22700400-22700459)
chr6 (707-772)||(10491015-10491080)
chr6 (707-762)||(17285009-17285064)
[»] chr3 (5 HSPs)
chr3 (713-772)||(3479101-3479160)
chr3 (713-772)||(15765173-15765232)
chr3 (713-772)||(17361959-17362018)
chr3 (713-772)||(17366601-17366660)
chr3 (713-772)||(20092804-20092863)
[»] chr2 (3 HSPs)
chr2 (713-772)||(42725602-42725661)
chr2 (713-772)||(44756754-44756813)
chr2 (713-772)||(40035913-40035972)
[»] chr1 (3 HSPs)
chr1 (713-772)||(5727999-5728058)
chr1 (713-772)||(27714325-27714384)
chr1 (713-772)||(37406570-37406629)
[»] scaffold0011 (1 HSPs)
scaffold0011 (715-764)||(4922-4971)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 338 - 762
Target Start/End: Original strand, 10111424 - 10111845
Alignment:
Q  338 cacagttatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgctaagctaggttaaaatgaagaatctcaagccaataattt 437  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10111424 cacaattatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgccaagctaggttaaaatgaagaatctcaagccaatcattt 10111523  T
Q  438 gtaaaagattttgtgcttgctttgtgttgaactaataaagcatcggaatttgaggataca-tactcttggtcgttgtttatgatttggttgcaaggtatt 536  Q
    |||||| | |||||| ||||||||| |||||||||   |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  10111524 gtaaaaaactttgtgtttgctttgtcttgaactaa---agcatcggaatttgaggatataatactcttggtcgttgtttatgatttggttgcaaggtatt 10111620  T
Q  537 catttattgcttatcattgtgttggtaagttgaaatttcttatgtaacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 636  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111621 catttattgcttatcattgtgttggcaagttgaaatttcttatgtcacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 10111720  T
Q  637 taattaaagaccttagtaaacctttttgtaaaagatttgatttgtttgcctttgaaggagagaaatgtcatcttaattttgggtactctgtttagcacat 736  Q
    |||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||||    
T  10111721 taattaaagacagcagtaaacc-ttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagtttttggtactctgtttagcacat 10111819  T
Q  737 agctaacaatcaataaaatttccccc 762  Q
    |||||||| ||||| |||||| ||||    
T  10111820 agctaacagtcaatgaaattttcccc 10111845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 10111061 - 10111399
Alignment:
Q  8 agggtttcacccatgacatcgatgatgggaaggcctgatcgctaggttgaaaggttataaattgttatggnnnnnnnnnnnnnnnnnnnnnncaataaaa 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||    
T  10111061 agggtttcacccatgacatcaatgatgggaaggcctgatcgctaggttgaaaggttataaattgttatggtttttttacactttttgtttttcaataaaa 10111160  T
Q  108 aatgcacaattactttgtcaatttt-gtatcggcaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgattaattaa 206  Q
    ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111161 aattcacaattactttgtcaatttttgtatcgacaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgattaattaa 10111260  T
Q  207 tctatggtgtgttgtatggtgtaatgctacctattattacctagtttatgtttatggaatttacttgcaattatatatttttcataggtatgtctctatt 306  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  10111261 tctatggtgtattgtatggtgtaatgctacctattattacctagtttatgtttatgtaatttacttgcaattatatatttttcatatatatgtctctatt 10111360  T
Q  307 gttcaaatttttgttgttctattgatcaacacacagtta 345  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10111361 gttcaaatttttgttgttctattgatcaacacacagtta 10111399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 13698392 - 13698451
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  13698392 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 13698451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 21302046 - 21301987
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  21302046 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 21301987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 40002123 - 40002182
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  40002123 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 40002182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 54346257 - 54346316
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  54346257 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 54346316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 707 - 772
Target Start/End: Original strand, 36357189 - 36357254
Alignment:
Q  707 tcttaattttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  36357189 tctttattttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 36357254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 8982498 - 8982439
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| |||||||    
T  8982498 ttttgggtactctgtttagaacatagcaaacagtcaataaaatttctccccaccaatgag 8982439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 13584930 - 13584871
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  13584930 ttttgggtactctgtttagcacatagctaacagtcaataaaatttccccccaccaatgag 13584871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 17507956 - 17508015
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  17507956 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 17508015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 24773570 - 24773511
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  24773570 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 24773511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 41856473 - 41856532
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  41856473 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 41856532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 42022866 - 42022925
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  42022866 ttttgggtactgtgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 42022925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 707 - 772
Target Start/End: Original strand, 19433322 - 19433387
Alignment:
Q  707 tcttaattttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  19433322 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgag 19433387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 707 - 772
Target Start/End: Original strand, 19569472 - 19569537
Alignment:
Q  707 tcttaattttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  19569472 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgag 19569537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 21646295 - 21646236
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  21646295 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 21646236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 32013580 - 32013639
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  32013580 ttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 32013639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 1445 - 1504
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  1445 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 1504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 15954 - 15895
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  15954 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 15895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 14867 - 14926
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  14867 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 14926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 29427 - 29486
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  29427 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 29486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 33241057 - 33241116
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  33241057 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 33241116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 47996854 - 47996913
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  47996854 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 47996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 713 - 757
Target Start/End: Original strand, 17498791 - 17498835
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaattt 757  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||    
T  17498791 ttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17498835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 713 - 757
Target Start/End: Complemental strand, 17554423 - 17554379
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaattt 757  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||    
T  17554423 ttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 22700459 - 22700400
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  22700459 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 22700400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 707 - 772
Target Start/End: Original strand, 10491015 - 10491080
Alignment:
Q  707 tcttaattttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||| |||||||| |||  |||||||||||||||||| ||||||||||||||||||| |||||||    
T  10491015 tcttagttttgggtgctccatttagcacatagctaacagtcaataaaatttccccccaccaatgag 10491080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 707 - 762
Target Start/End: Complemental strand, 17285064 - 17285009
Alignment:
Q  707 tcttaattttgggtactctgtttagcacatagctaacaatcaataaaatttccccc 762  Q
    ||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  17285064 tcttagttttgggcagtctgtttagcacatagctaacagtcaataaaatttccccc 17285009  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 3479160 - 3479101
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  3479160 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 3479101  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 15765232 - 15765173
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  15765232 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 15765173  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 17361959 - 17362018
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  17361959 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 17362018  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 17366601 - 17366660
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  17366601 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 17366660  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 20092863 - 20092804
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  20092863 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 20092804  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 42725661 - 42725602
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  42725661 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 42725602  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 44756813 - 44756754
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  44756813 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 44756754  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 40035972 - 40035913
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    |||||||||||||||||||||||| |  |||||||||||||||||| ||| | |||||||    
T  40035972 ttttgggtactctgtttagcacatggaaaacaatcaataaaatttctcccgaccaatgag 40035913  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 5727999 - 5728058
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  5727999 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 5728058  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Original strand, 27714325 - 27714384
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  27714325 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 27714384  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 772
Target Start/End: Complemental strand, 37406629 - 37406570
Alignment:
Q  713 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgag 772  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  37406629 ttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgag 37406570  T

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Target: scaffold0011 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 715 - 764
Target Start/End: Original strand, 4922 - 4971
Alignment:
Q  715 ttgggtactctgtttagcacatagctaacaatcaataaaatttcccccca 764  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  4922 ttgggtactccgtttagcacatagctaacagtcaataaaatttcccccca 4971  T

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