View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1717-Insertion-9 (Length: 730)

Name: NF1717-Insertion-9
Description: NF1717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1717-Insertion-9
NF1717-Insertion-9
[»] chr5 (31 HSPs)
chr5 (374-708)||(31643964-31644298)
chr5 (81-350)||(31644658-31644907)
chr5 (178-370)||(32891174-32891375)
chr5 (178-366)||(4391843-4392040)
chr5 (181-366)||(37093912-37094106)
chr5 (293-370)||(228023-228100)
chr5 (179-370)||(34286594-34286793)
chr5 (190-279)||(5481455-5481541)
chr5 (293-366)||(35672431-35672504)
chr5 (178-279)||(3456855-3456950)
chr5 (178-279)||(8692611-8692709)
chr5 (299-369)||(11739347-11739417)
chr5 (234-279)||(38614231-38614276)
chr5 (301-370)||(41326578-41326647)
chr5 (239-279)||(6614302-6614342)
chr5 (292-370)||(29223465-29223541)
chr5 (231-276)||(35672358-35672403)
chr5 (199-279)||(40925938-40926015)
chr5 (292-367)||(8692511-8692586)
chr5 (292-349)||(3456773-3456830)
chr5 (234-279)||(11739270-11739315)
chr5 (239-279)||(29223566-29223606)
chr5 (35-71)||(31644844-31644880)
chr5 (8-59)||(31644906-31644957)
chr5 (178-217)||(43141518-43141557)
chr5 (664-702)||(40843413-40843451)
chr5 (179-229)||(42148981-42149030)
chr5 (293-362)||(28434209-28434278)
chr5 (646-699)||(31362944-31362997)
chr5 (646-699)||(31378651-31378704)
chr5 (665-702)||(31476031-31476068)
[»] chr2 (23 HSPs)
chr2 (178-370)||(13685993-13686194)
chr2 (178-370)||(28429281-28429479)
chr2 (177-352)||(14940984-14941169)
chr2 (190-361)||(41464909-41465089)
chr2 (180-367)||(42263834-42264030)
chr2 (180-346)||(19898943-19899118)
chr2 (177-370)||(45093146-45093344)
chr2 (178-349)||(25414934-25415114)
chr2 (179-279)||(28716316-28716413)
chr2 (299-366)||(23454389-23454456)
chr2 (196-353)||(3810285-3810451)
chr2 (179-370)||(35323474-35323674)
chr2 (292-361)||(35676398-35676467)
chr2 (292-371)||(2752754-2752833)
chr2 (311-370)||(16058513-16058572)
chr2 (292-361)||(29689341-29689407)
chr2 (292-370)||(28716460-28716538)
chr2 (240-279)||(29689277-29689316)
chr2 (177-274)||(36690816-36690912)
chr2 (179-221)||(24413861-24413903)
chr2 (178-220)||(35676269-35676311)
chr2 (179-220)||(2752614-2752655)
chr2 (242-279)||(40126559-40126596)
[»] chr8 (23 HSPs)
chr8 (179-370)||(41322529-41322729)
chr8 (179-348)||(36473048-36473226)
chr8 (178-361)||(29314008-29314200)
chr8 (177-350)||(33888885-33889050)
chr8 (179-370)||(15561913-15562113)
chr8 (293-370)||(4851733-4851810)
chr8 (292-366)||(34392112-34392186)
chr8 (304-370)||(3607036-3607102)
chr8 (178-278)||(2001751-2001848)
chr8 (179-360)||(39112658-39112848)
chr8 (292-370)||(8551489-8551567)
chr8 (306-351)||(11653849-11653894)
chr8 (239-279)||(1005692-1005732)
chr8 (178-220)||(4824301-4824343)
chr8 (239-279)||(4851836-4851876)
chr8 (293-329)||(11643324-11643360)
chr8 (238-270)||(34392220-34392252)
chr8 (179-262)||(37919508-37919588)
chr8 (177-216)||(13357627-13357666)
chr8 (290-341)||(37919658-37919709)
chr8 (332-370)||(1196507-1196545)
chr8 (324-366)||(36473052-36473094)
chr8 (242-279)||(11643386-11643423)
[»] chr7 (8 HSPs)
chr7 (200-367)||(27425773-27425949)
chr7 (178-370)||(8307525-8307724)
chr7 (177-370)||(23991947-23992149)
chr7 (238-371)||(22326857-22327002)
chr7 (303-370)||(19479441-19479508)
chr7 (292-370)||(17611842-17611920)
chr7 (178-279)||(42195480-42195578)
chr7 (239-279)||(17611945-17611985)
[»] chr4 (21 HSPs)
chr4 (180-370)||(24683076-24683275)
chr4 (178-370)||(18375389-18375589)
chr4 (179-279)||(54358215-54358312)
chr4 (178-371)||(17847540-17847737)
chr4 (179-370)||(41633217-41633416)
chr4 (179-267)||(41497890-41497977)
chr4 (180-353)||(37674000-37674182)
chr4 (179-375)||(23348112-23348321)
chr4 (293-370)||(26179332-26179409)
chr4 (180-279)||(41878619-41878715)
chr4 (238-286)||(47281587-47281635)
chr4 (178-279)||(4512160-4512259)
chr4 (177-220)||(52726031-52726074)
chr4 (292-370)||(41878321-41878399)
chr4 (179-279)||(47838942-47839038)
chr4 (292-370)||(47281657-47281735)
chr4 (179-220)||(54021241-54021282)
chr4 (322-370)||(4098532-4098580)
chr4 (323-366)||(23348116-23348159)
chr4 (340-370)||(41497984-41498014)
chr4 (181-214)||(47282226-47282259)
[»] chr3 (19 HSPs)
chr3 (181-370)||(45166226-45166424)
chr3 (178-370)||(36517514-36517715)
chr3 (179-370)||(521763-521963)
chr3 (196-371)||(20912166-20912350)
chr3 (181-370)||(38176390-38176588)
chr3 (178-371)||(31788304-31788506)
chr3 (178-370)||(23642977-23643178)
chr3 (178-369)||(50612872-50613072)
chr3 (179-366)||(52546746-52546942)
chr3 (178-279)||(39145354-39145452)
chr3 (239-370)||(1561311-1561454)
chr3 (293-370)||(34624598-34624674)
chr3 (300-370)||(43203248-43203318)
chr3 (178-279)||(51297021-51297121)
chr3 (292-367)||(39145254-39145329)
chr3 (242-279)||(34624535-34624572)
chr3 (317-370)||(544634-544687)
chr3 (239-270)||(22650451-22650482)
chr3 (314-370)||(11358880-11358937)
[»] chr1 (22 HSPs)
chr1 (177-370)||(34475899-34476101)
chr1 (190-370)||(20808947-20809136)
chr1 (177-369)||(31032694-31032895)
chr1 (182-366)||(9098571-9098761)
chr1 (190-366)||(1270175-1270360)
chr1 (190-370)||(29095532-29095721)
chr1 (178-371)||(42480120-42480324)
chr1 (180-279)||(47550894-47550990)
chr1 (302-369)||(4194767-4194834)
chr1 (292-371)||(41646575-41646653)
chr1 (178-372)||(16254853-16255055)
chr1 (178-279)||(4624448-4624539)
chr1 (242-370)||(24135755-24135893)
chr1 (239-370)||(34807936-34808079)
chr1 (190-366)||(45010204-45010388)
chr1 (293-370)||(50663730-50663808)
chr1 (302-370)||(7167455-7167523)
chr1 (182-253)||(41647356-41647424)
chr1 (292-370)||(47550791-47550869)
chr1 (292-323)||(44714929-44714960)
chr1 (245-279)||(2958753-2958787)
chr1 (337-370)||(2958836-2958869)
[»] scaffold0002 (1 HSPs)
scaffold0002 (180-367)||(492669-492865)
[»] chr6 (8 HSPs)
chr6 (179-364)||(7646773-7646967)
chr6 (193-366)||(25935512-25935694)
chr6 (179-370)||(17366850-17367016)
chr6 (206-279)||(29487541-29487611)
chr6 (239-278)||(28898438-28898477)
chr6 (292-350)||(12607181-12607239)
chr6 (179-258)||(12607030-12607107)
chr6 (246-279)||(12607123-12607156)
[»] scaffold0132 (2 HSPs)
scaffold0132 (292-369)||(537-614)
scaffold0132 (292-369)||(8497-8574)
[»] scaffold0339 (1 HSPs)
scaffold0339 (178-247)||(13378-13443)
[»] scaffold0188 (1 HSPs)
scaffold0188 (337-370)||(15981-16014)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 374 - 708
Target Start/End: Complemental strand, 31644298 - 31643964
Alignment:
Q  374 tatatatcaccgtccaaacggaagcatgtgaagaattctttgttgaacttctttgtaccgcagtagcctaataagaccaaggttgtaggaccatcgttga 473  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31644298 tatatatcaccatccaaacggaagcatgtgaagaattctttgttgaacttctttgcaccgcagtagcctaataagaccaaggttgtaggaccatcgttga 31644199  T
Q  474 cgggtttaggttagaactttccacgtaaatcattggaaaaatcgttagacctttgtgcgagatagtaacagtagcatctcacactccaattataaaaggt 573  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31644198 cgggtttaggttagaactttccacgtaactcattgg-aaaatcgttagacctttgtgcgagatagtaacagtagcatctcacactccaattataaaaggt 31644100  T
Q  574 tgctctcattctcacccaatattggtgaaatcaatttttacaaacttgaga-taaatgacgtccattgttgttcaaatttggagatggttcttgcagcca 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  31644099 tgctctcattctcacccaatattggtgaaatcaatttttacaaacttgaaacaaaatgacgtccattgttgttcaaatttggagatggttcttgcagcca 31644000  T
Q  673 aaggtatggagatttgtggggtttgcttcatatatt 708  Q
    |||||||||||||||||||| |||||||||| ||||    
T  31643999 aaggtatggagatttgtgggctttgcttcatctatt 31643964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 81 - 350
Target Start/End: Complemental strand, 31644907 - 31644658
Alignment:
Q  81 tttagcattagtctatatacttgctaaagttggacgtataacatatgaattcacgaatgacgtgttgccattttgtgttatccatttctttttgactagg 180  Q
    |||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  31644907 tttagcattaatctatatacttgctaaagctggacgtacaacatgtgaattcacgaatgacgtgttgacattttgagttatccatttctttttgactag- 31644809  T
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
                      |||||||| |||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||     
T  31644808 ------------------aaaaatagtatcaagaatttt-gcaagacacacaattggtaagttttaattgcatggtttatttgttcacttcctatttttc 31644728  T
Q  281 aaccacgccgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    ||||||  ||  ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  31644727 aaccacatcggtaaatagtgcattgtgattggctgctctttattcttgaagaattattgatgttattttt 31644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 32891375 - 32891174
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||  |||||  || |||||||||||||||||||||||||||||||||| |    
T  32891375 aggaaaatgctatttatctagaaaaatagcatcaacaattttt-caagacac--agttgacaaattttaattgcatgatttatttgttcacttcctatct 32891279  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || | |||| ||            | |||||| ||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||| ||||||| |||    
T  32891278 tttagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctttttattcttgaagaattcttgatgttatttttctagagatataacat 32891179  T
Q  366 tgctc 370  Q
    |||||    
T  32891178 tgctc 32891174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 178 - 366
Target Start/End: Original strand, 4391843 - 4392040
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||  || ||| ||||||||||||||| |||||||||||||||||||||||    
T  4391843 aggaaaatgcaatttctctagaaaaatagcatcaagaattttt-caagacac--agctggcaagttttaattgcataatttatttgttcacttcctattt 4391939  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || | ||||  |            | |||| | |||||||| |||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| |||    
T  4391940 ttcagccacagctccttgaattgtggcaaacagtgcattgtaattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacat 4392039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 181 - 366
Target Start/End: Original strand, 37093912 - 37094106
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
    |||||| | ||| ||||||||||||||||||||||||||| ||||||||  |||||  ||||||||||||||| |||||||||||||||||||||||||     
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaattttt-caagacac--agttgacaagttttaattgcataatttatttgttcacttcctatttttc 37094008  T
Q  281 aaccacgcc-----ga-------caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    |  ||| ||     ||       |||||| | || ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||    
T  37094009 agtcacacctccttgaattgttgcaaatagtacaatgtgattgactgctctttattcttgaagaattgttgatgttatttttctagagatataacatt 37094106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 228100 - 228023
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  228100 aaatagtgcattgtgattgattgttctttattcttgaaaaattcttgatgttatttttctagagatatatcattgctc 228023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 34286793 - 34286594
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||||||||||||||||||||||| ||||||| ||||||||  |  ||  || |||||||||||||||||||||||||| ||||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaa-aattttttcaagacac--aactgacaaattttaattgcatgatttatttgttcatttcctatttt 34286697  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            | |||||| ||||| ||||||| ||||| |||||||||||| ||||||||||||||||||| || |||||||  |||    
T  34286696 tcagccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttgaataattattgatgttatttttttagagatataatatt 34286598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 5481541 - 5481455
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||||||||  |||||||  ||||||||| |||||| ||||||||||||||||||||||  |||||||    
T  5481541 tttctctagaaaaatagcatcaagaatttttt-aagacac--agttggtaaattttaactgcatgatttatttgttcactttttattttt 5481455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 35672431 - 35672504
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||| ||||    
T  35672431 aaatagtgcattgtgattgactgctctttattcttgaaaaattcttaatgttatttttctagaaatataacatt 35672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 3456950 - 3456855
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||      || ||   |  |||||||||||||||||||||||||||||||||||||||    
T  3456950 aggaaaatgctatttttctagaaaaatagcatcaagaatttttg------acacaaccgacaagttttaattgcatgatttatttgttcacttcctattt 3456857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 8692709 - 8692611
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||| |||||||||||||||||| ||| ||||||||  || ||  || ||||||||||||||||||||| ||||||| ||||||    
T  8692709 aggaaaatgttatttctctaaaaaaatagcatcaagaatcttt-caagacac--agctgacaaattttaattgcatgatttatttattcactttctattt 8692613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 11739347 - 11739417
Alignment:
Q  299 tgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgct 369  Q
    |||||| |||||  ||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  11739347 tgcattatgattacctgctttttattcttgaagaattcttgatgttatttttctaaagatataacattgct 11739417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 38614231 - 38614276
Alignment:
Q  234 ttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  38614231 ttggtaagttttaattgcatgatttatttgtttacttcctattttt 38614276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 41326578 - 41326647
Alignment:
Q  301 cattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||||||||| |||||||||||||||||| |  |  |||||||||||||||| ||||||||||||||||    
T  41326578 cattgtgattggctgctctttattcttgaagagatcgtgatgttatttttctagagatatagcattgctc 41326647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 6614302 - 6614342
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6614302 aagttttaattgcatgatttatttgttcacttcctattttt 6614342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 29223541 - 29223465
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||| ||||||||| |||||||||||| ||| ||||| |||| ||||| |||||||||||||||||||||| |||||    
T  29223541 caaatagtgcattgtggttgactgctctt-att-ttgaagaattcttgatattatttttctaaagatatagcactgctc 29223465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 35672358 - 35672403
Alignment:
Q  231 cagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  35672358 cagttgataaattttaattgcatgatttatttgttcacttcctatt 35672403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 40926015 - 40925938
Alignment:
Q  199 aaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||| ||||||||||||||||| ||||||||  |  ||  |||||||||||| ||||||||||||||||||||||||||||    
T  40926015 aaaagtagcatcaagaattttt-caagacac--atctgacaagttttaattgtatgatttatttgttcacttcctattttt 40925938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 8692586 - 8692511
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattg 367  Q
    |||||| | |||| ||||||  |||| |||||||||||| |||| ||||||||||||||||| ||||||| |||||    
T  8692586 caaatagtacattatgattggatgctatttattcttgaagaattcttgatgttatttttctagagatataacattg 8692511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 3456830 - 3456773
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttt 349  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||  | ||||||||||    
T  3456830 caaatagtgcattgtgagtgactgctctttattcttgaagaattcgtaatgttatttt 3456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 11739270 - 11739315
Alignment:
Q  234 ttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||    
T  11739270 ttgggaagttttaattgcataatttatttgttcacctcctattttt 11739315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 29223606 - 29223566
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  29223606 aagttttaattgcatgatttatttgtacacttcttattttt 29223566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 31644844 - 31644880
Alignment:
Q  35 cacgtcattcgtgaattcacatgttatacgtccagct 71  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31644844 cacgtcattcgtgaattcacatgttgtacgtccagct 31644880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 31644957 - 31644906
Alignment:
Q  8 tttcatttatacaatatgttgttacatcacgtcattcgtgaattcacatgtt 59  Q
    ||||||||| |||||| |||| || ||||| |||||||||||||||||||||    
T  31644957 tttcatttacacaataggttgctaaatcacctcattcgtgaattcacatgtt 31644906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 43141518 - 43141557
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatt 217  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  43141518 aggaaaatgttatttctctagaaaaatagcatcaagaatt 43141557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 702
Target Start/End: Complemental strand, 40843451 - 40843413
Alignment:
Q  664 ttgcagccaaaggtatggagatttgtggggtttgcttca 702  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  40843451 ttgcagacaaaggtatggagatttgtgggatttgcttca 40843413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 42149030 - 42148981
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacac 229  Q
    |||||| ||| ||||||||||||||||| ||||||||||||| ||||||||    
T  42149030 ggaaaacgctatttctctagaaaaatagtatcaagaattttt-caagacac 42148981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 28434278 - 28434209
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatag 362  Q
    ||||| |||||||| |||| |||||||||||| || || |||| |  |||||||||||||| ||||||||    
T  28434278 aaatagtgcattgtaattggctgctctttatttttaaagaattctcaatgttatttttctagagatatag 28434209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 699
Target Start/End: Original strand, 31362944 - 31362997
Alignment:
Q  646 caaatttggagatggttcttgcagccaaaggtatggagatttgtggggtttgct 699  Q
    ||||||||||||||  |  ||||||||||||| |||||||||||||| ||||||    
T  31362944 caaatttggagatgtatgatgcagccaaaggtgtggagatttgtgggatttgct 31362997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 699
Target Start/End: Original strand, 31378651 - 31378704
Alignment:
Q  646 caaatttggagatggttcttgcagccaaaggtatggagatttgtggggtttgct 699  Q
    ||||||||||||||| |  ||||||||||||| ||||||||| |||| ||||||    
T  31378651 caaatttggagatggatgatgcagccaaaggtgtggagatttctgggatttgct 31378704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 702
Target Start/End: Complemental strand, 31476068 - 31476031
Alignment:
Q  665 tgcagccaaaggtatggagatttgtggggtttgcttca 702  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  31476068 tgcagacaaaggtatggagatttgtgggctttgcttca 31476031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 7e-45; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 13686194 - 13685993
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| |||||||||||||||||||||||||||||||  |||||||  | |||| |||||||||||||||||||||||||||||||||||||||    
T  13686194 aggaaaatgctatttctctagaaaaatagcatcaagaatttttt-aagacac--aattggcaagttttaattgcatgatttatttgttcacttcctattt 13686098  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || | |||| ||            | ||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  13686097 ttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaaaaattcttgatgttatttttctagagatatagcat 13685998  T
Q  366 tgctc 370  Q
    |||||    
T  13685997 tgctc 13685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 28429479 - 28429281
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| || |||||     ||  ||||||||||||||||||||||||||||||||| |||||    
T  28429479 aggaaaatgctatttctttagaaaaatagcatcaagaattttt-catgacac-----tgacaagttttaattgcatgatttatttgttcacttcttattt 28429386  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || |  ||| ||            | |||||||||||||||| ||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  28429385 ttcagtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattcttgaagaattcttgatattatttttctaaagatatagcat 28429286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 177 - 352
Target Start/End: Original strand, 14940984 - 14941169
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||  ||| ||||||||||| ||||||||||||||||||||| ||||    
T  14940984 taggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagaca--caactggcaagttttaatttcatgatttatttgttcacttcttatt 14941080  T
Q  277 ttt-aaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttct 352  Q
    |||  |  ||| ||            | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14941081 tttcgagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattattgatgttatttttct 14941169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 190 - 361
Target Start/End: Original strand, 41464909 - 41465089
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgc- 288  Q
    |||||||||||||||| |||||||||||||| ||||||||  |||||  |||||||||||||||||||||||||||||||| |||||||| |||||| |     
T  41464909 tttctctagaaaaataacatcaagaattttt-caagacac--agttgacaagttttaattgcatgatttatttgttcactttctatttttcaaccacacc 41465005  T
Q  289 -----------cgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatata 361  Q
               || |||||| |||||||||||   |||| ||||||||||||| |||| ||||||||||||||||| |||||||    
T  41465006 tccttgaattgcggcaaatagtgcattgtgatccgctgcactttattcttgaagaattcttgatgttatttttctagagatata 41465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 180 - 367
Target Start/End: Complemental strand, 42264030 - 42263834
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacg-cagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||| | |||||||| |||||||||||||| ||||||| ||||||||| ||||    ||||||||||||||| ||||||||||||| ||||||||||    
T  42264030 gaaaatgttatttctctaaaaaaatagcatcaa-aattttttcaagacacgacagtc---aagttttaattgcataatttatttgttcatttcctatttt 42263935  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            |||||||  ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||    
T  42263934 tcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 42263835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 180 - 346
Target Start/End: Complemental strand, 19899118 - 19898943
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||  |  ||| |||||||||||||||||||||||||||||||||||| ||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaattttt-caagacac--aactggcaagttttaattgcatgatttatttgttcacttcctaatttt 19899022  T
Q  280 aaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttat 346  Q
     | | |  ||            |||||||||||||||||||||| |||||||||||||||||| |||| || |||||||    
T  19899021 cagcaatacctccttgaattgtgacaaataatgcattgtgattggctgctctttattcttgaagaattcttaatgttat 19898943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 177 - 370
Target Start/End: Original strand, 45093146 - 45093344
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||| | |||||||||||||||||||||||||||||||  |||| ||  |||||| || |||||||||||||||||| ||||| ||||||||||    
T  45093146 taggaaaatgttatttctctagaaaaatagcatcaagaatttttt-aagatac--agttgggaaattttaattgcatgatttaattgtttacttcctatt 45093242  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagca 364  Q
    ||| |  ||  ||            | |||||| |||||||||||||    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  45093243 tttcagtcatacctccttgaattgtggcaaatagtgcattgtgattg----ctctttattcttgaagaattattgatgttatttttctagagatatagca 45093338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 25415114 - 25414934
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| | ||||||||||||||| || |||||||||| ||||||||  || || ||||||||||||||||||||||||||||||||| || |||    
T  25415114 aggaaaatgctatatctctagaaaaatagtataaagaattttt-caagacac--agctgataagttttaattgcatgatttatttgttcactttcttttt 25415018  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttt 349  Q
    || | |||  ||            | |||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  25415017 ttcagccatacctccttgaattgtggcaaatagtgcattgtgattgactgttctttattcttgaagaattcttgatgttatttt 25414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 28716316 - 28716413
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||| ||||||||||||||||||||||||||| ||||||||  |  ||| ||||||||||||||| ||||||||||||||||||||||||    
T  28716316 ggaaaatgttatttttctagaaaaatagcatcaagaattttt-caagacac--aactggcaagttttaattgcattatttatttgttcacttcctatttt 28716412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 23454389 - 23454456
Alignment:
Q  299 tgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||    
T  23454389 tgcattgtgattgactgctctttattcttgaagaattttttatgttatttttctagagatatagcatt 23454456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 196 - 353
Target Start/End: Original strand, 3810285 - 3810451
Alignment:
Q  196 tagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------ 289  Q
    |||||||||||||||||||| |||| ||||||||  || ||| ||||||||||||||||||||||||||||||||| ||||||| |  ||| ||          
T  3810285 tagaaaaatagcatcaagaaatttt-caagacac--agctggcaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttg 3810381  T
Q  290 ------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
          | |||||| |||||||| |||| || ||||||||||||||| ||||||| ||||||||||||||    
T  3810382 aattgtggcaaatagtgcattgtaattggctactctttattcttgaagaattattaatgttatttttcta 3810451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 179 - 370
Target Start/End: Original strand, 35323474 - 35323674
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||||||||||||||||| || |||||||||| || |||||  |||||  ||||||||||| |||||||||| |||||| ||  ||||||    
T  35323474 ggaaaatgttatttctctagaaaaatagtattaagaattttttca-gacac--agttgacaagttttaattacatgatttatatgttcagtttttatttt 35323570  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            | |||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||||||| | |||||||| |    
T  35323571 tcagccacacctcattgaattgtggcaaatagtgtattgtgattgactgttctttattcttgaagaatttttgatgttatttttctataaatatagcact 35323670  T
Q  367 gctc 370  Q
    ||||    
T  35323671 gctc 35323674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 35676398 - 35676467
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatata 361  Q
    |||||| ||||||||| ||||||||||||||||||| || |||| |||||||||||||| || |||||||    
T  35676398 caaatagtgcattgtggttgactgctctttattcttaaagaattcttgatgttatttttttagagatata 35676467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 2752754 - 2752833
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctcg 371  Q
    |||||| ||||||||||||| ||||| ||| |||||||| |||| || |||||||||||||| | ||||| |||||||||    
T  2752754 caaatagtgcattgtgattggctgctattttttcttgaagaattcttaatgttatttttctagaaatatatcattgctcg 2752833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 16058513 - 16058572
Alignment:
Q  311 gactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||| ||||||||||||||| |||| || |||||||||||||| ||||||||||||||||    
T  16058513 gactactctttattcttgaagaattcttaatgttatttttctagagatatagcattgctc 16058572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 29689341 - 29689407
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatata 361  Q
    |||||| ||||||||||||   |||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  29689341 caaatagtgcattgtgatt---tgctctttattcttaaaaaattcttgatgttatttttctagagatata 29689407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 28716460 - 28716538
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||| ||||||||||| | || || |||||||||||| |||| ||||||| ||||||||| ||||||| ||||||||    
T  28716460 caaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgtcatttttctagagatataacattgctc 28716538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 29689277 - 29689316
Alignment:
Q  240 agttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29689277 agttttaattgcatgatttattagttcacttcctattttt 29689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 36690816 - 36690912
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaat-ttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttccta 274  Q
    |||||||||||| ||||| |||||||||| ||| |||||| |||| ||||||||  || ||  || |||||||| | ||||||||||||||||||||||    
T  36690816 taggaaaatgctatttctttagaaaaataacattaagaatatttttcaagacac--agctgacaaattttaattacttgatttatttgttcacttccta 36690912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 24413903 - 24413861
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttg 221  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataatttttg 24413861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 35676269 - 35676311
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaattttt 220  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  35676269 aggaaaatgctatttctctagaaaaatagcatcaagatttttt 35676311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 2752614 - 2752655
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaattttt 220  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaattttt 2752655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 40126559 - 40126596
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  40126559 ttttaattgtatgatttatttgttcacttcctattttt 40126596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 41322729 - 41322529
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagacat--agttagcaagttttaattgcatgatttaattgttaacttcctatttt 41322633  T
Q  279 taaaccacgccg------------acaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    |  ||||| ||             ||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  41322632 tctaccacacctccttgaattttcacaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttaaagatatagcatt 41322533  T
Q  367 gctc 370  Q
    ||||    
T  41322532 gctc 41322529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 36473048 - 36473226
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| |||||||||||||||| |||||||||||||| ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaattttt-caagacac--aattggtaagttttaattgcatgatttatttgttcacttcctatttt 36473144  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattt 348  Q
    | | |||| ||            | |||||| || | ||||||||||||||||||||||||||| |||| ||||||||||||    
T  36473145 tcagccacacctccttaaattgtgtcaaatagtgtactgtgattgactgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 178 - 361
Target Start/End: Complemental strand, 29314200 - 29314008
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| |||||||| |||||||| ||||||||||||| ||||||||  |||||||||||||||||||||| |||||||||| ||||| ||||||    
T  29314200 aggaaaatgctatttctctaaaaaaatagtatcaagaattttt-caagacac--agttggtaagttttaattgcattatttatttgtccactttctattt 29314104  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatata 361  Q
    || |  ||| ||            | |||||| |||||||||||||||| |||||||||||| || |||| ||||||||||||||||| |||||||    
T  29314103 ttcagtcacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttattcttaaacaattcttgatgttatttttctagagatata 29314008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 177 - 350
Target Start/End: Complemental strand, 33889050 - 33888885
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| |  ||  ||  ||||||||||||||| ||||||||||||||| ||||||    
T  33889050 taggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagaaa--caactgacaagttttaattgcataatttatttgttcactccctatt 33888954  T
Q  277 tttaaaccacgccgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    ||| |     ||||  |||||||||||||||||||| || ||||||||||| || |||| || |||||||||||    
T  33888953 tttca-----gccggtaaataatgcattgtgattgagtgttctttattcttaaagaatttttaatgttattttt 33888885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 179 - 370
Target Start/End: Original strand, 15561913 - 15562113
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||| ||  |||||| |||||||||||| |||||||||||||||||||||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaattttt-caagatac--agttggcaagttttaattgtatgatttatttgttcacttcctatttt 15562009  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            | |||||||||||||  ||||||||| | ||||||||| |||  || ||||||||||||||||  |||||||| |||    
T  15562010 tcagccacacctccttgaattgtggcaaataatgcattacgattgactgttatttattcttaaaatttttttgatgttatttttcttgagatatagaatt 15562109  T
Q  367 gctc 370  Q
    ||||    
T  15562110 gctc 15562113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 4851810 - 4851733
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  4851810 aaatagtgcattatgattgactgctctttattcttaaaaaattcttgatgttatttttctagagatatagcattgctc 4851733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 34392186 - 34392112
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    |||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  34392186 caaatagtacattgtgattgagtgctctttattcttgaaaaattcttgatgttatttttttagagatatagcatt 34392112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 3607102 - 3607036
Alignment:
Q  304 tgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||||||||| || |||||||||||||  || ||||||||||||||||| ||||||||||||||||    
T  3607102 tgtgattgactactttttattcttgaaatttttttgatgttatttttctagagatatagcattgctc 3607036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 2001848 - 2001751
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||||||||||||||||||| | ||||| ||||||||  || ||  ||||||||||| |||||||||||||||||||  ||||||    
T  2001848 aggaaaatgttatttctctagaaaaatagcatcaa-atttttttcaagacac--agctgccaagttttaattacatgatttatttgttcactatctattt 2001752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 360
Target Start/End: Complemental strand, 39112848 - 39112658
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||||||   |||||||||||||||||| || | ||||| ||||||||  | |||| || ||||||||| ||||||||||||||||||| |||||||    
T  39112848 ggaaaatgctacatctctagaaaaatagcattaa-atttttttcaagacac--aattggcaaattttaattggatgatttatttgttcactttctatttt 39112752  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatat 360  Q
    | | || | ||            | |||||| |||||||||||||  ||||||||||| ||||| |||| ||||||||||||||||| ||||||    
T  39112751 tcagccgcacctccttgaattatggcaaatagtgcattgtgattggttgctctttatttttgaagaattcttgatgttatttttctagagatat 39112658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 8551567 - 8551489
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||| |||||||||||||||  || |||||||||| ||| |||| || ||||||||||| || ||||||||||||||||    
T  8551567 caaacaatgcattgtgattggttgttctttattctcgaagaattcttaatgttatttttttagagatatagcattgctc 8551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 11653849 - 11653894
Alignment:
Q  306 tgattgactgctctttattcttgaaaaattattgatgttatttttc 351  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  11653849 tgattgactgctctttattcttgaagaattcttgatgttatttttc 11653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 1005732 - 1005692
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  1005732 aagttttaattgcataatttatttgttcacttcctattttt 1005692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 4824343 - 4824301
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaattttt 220  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  4824343 aggaaaatgctatttctctagaaaaatagcattaagaattttt 4824301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 4851876 - 4851836
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  4851876 aagttttaattgcatgatttatttgtttatttcctattttt 4851836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 11643360 - 11643324
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttga 329  Q
    ||||| |||||||||||||||||||||||||||||||    
T  11643360 aaatagtgcattgtgattgactgctctttattcttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 34392252 - 34392220
Alignment:
Q  238 taagttttaattgcatgatttatttgttcactt 270  Q
    |||||||||||||||||||||||||||||||||    
T  34392252 taagttttaattgcatgatttatttgttcactt 34392220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 37919508 - 37919588
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttattt 262  Q
    |||||||||| ||||||||||||||||| ||||||||||| | ||| |||  ||||||  ||||||||||||| | ||||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaagaatttat-caaaaca--cagttgacaagttttaattgcgtaatttattt 37919588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 13357627 - 13357666
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaat 216  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  13357627 taggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 37919658 - 37919709
Alignment:
Q  290 gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgat 341  Q
    ||||||||||||||||||||||| || | ||||||||| ||||||| |||||    
T  37919658 gacaaataatgcattgtgattgattgttatttattcttaaaaaattcttgat 37919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 1196545 - 1196507
Alignment:
Q  332 aattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  1196545 aattcttgatgttatttttctagagatatagcattgctc 1196507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 36473094 - 36473052
Alignment:
Q  324 tcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||    
T  36473094 tcttgaaaaattcttgatgttatttttctagagaaatagcatt 36473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 11643423 - 11643386
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11643423 ttttaattgtatgatttatttgttcacttcgtattttt 11643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 200 - 367
Target Start/End: Original strand, 27425773 - 27425949
Alignment:
Q  200 aaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc---------- 289  Q
    ||||||||||||| ||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |              
T  27425773 aaaatagcatcaacaattttt-caagacac--agttggcaagttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaatt 27425869  T
Q  290 --gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattg 367  Q
      | |||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||    
T  27425870 gtggcaaataatgcattgtgattgactgttctttattctttaagaattcttgatgttatttttctaaagatatagcattg 27425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 8307724 - 8307525
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||| |||||||||||||| | || |||| ||||||||  |  ||| || |||||| |||||||||||||||||||||||||||||    
T  8307724 aggaaaatgatatttctcaagaaaaatagcatcgacaaatttttcaagacac--aactggcaaattttaactgcatgatttatttgttcacttcctattt 8307627  T
Q  278 ttaaaccacgcc---------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgc 368  Q
    || | |||| ||         | | |||| |||||| |||||||||  ||||||||||| ||||||| ||||||||||||||||| | ||| ||||||||    
T  8307626 ttgagccacaccttgaattgtggctaatagtgcattatgattgactcgtctttattcttaaaaaattcttgatgttatttttctagatatacagcattgc 8307527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 177 - 370
Target Start/End: Original strand, 23991947 - 23992149
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||||| |||||||||||| |||| ||||||||||||| ||||||||  |  ||  |||||||||||||||||| | ||||||||||| |||||    
T  23991947 taggaaaatgctatttctctagaaacatagtatcaagaattttt-caagacac--aactgacaagttttaattgcatgatatttttgttcactttctatt 23992043  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagca 364  Q
    ||| | |||| ||            | |||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| ||| || ||||||| ||    
T  23992044 tttcagccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttattcttgaagaattcttgatgttatatttgtagagatataaca 23992143  T
Q  365 ttgctc 370  Q
    ||||||    
T  23992144 ttgctc 23992149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 238 - 371
Target Start/End: Complemental strand, 22327002 - 22326857
Alignment:
Q  238 taagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattc 325  Q
    ||||||||||||||||||||||||||||||||| |||||||| |  ||| ||            | |||||| | ||||||||||||| ||||||| |||    
T  22327002 taagttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctctttcttc 22326903  T
Q  326 ttgaaaaattattgatgttatttttctaaagatatagcattgctcg 371  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||    
T  22326902 ttgaagaattcttgatgttatttttctaaagatatagcactgctcg 22326857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 19479508 - 19479441
Alignment:
Q  303 ttgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||||||| | ||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||    
T  19479508 ttgtgattgattactctttatttttgaagaatttttgatgttatttttctagagatatagcattgctc 19479441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 17611920 - 17611842
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||||| |||| ||||||  || |||||||||||||| |||| |||||||||||||||||  |||||||||||||||    
T  17611920 caaataattcattatgattggttgttctttattcttgaagaattcttgatgttatttttctagcgatatagcattgctc 17611842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 42195578 - 42195480
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||||||||||| ||||||||||||||  |||| ||  |  |   ||||||||||||||||||||||||||||||| | |||||    
T  42195578 aggaaaatgttatttctctagaaaaataacatcaagaatttttt-aagatac--aactaaaaagttttaattgcatgatttatttgttcactccttattt 42195482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 17611985 - 17611945
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  17611985 aagttttaattgtatgatttatttattcacttcctattttt 17611945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 180 - 370
Target Start/End: Complemental strand, 24683275 - 24683076
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||| | ||||| ||||||||||| ||||||||||||| |||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  24683275 gaaaatgttatttctttagaaaaatagtatcaagaattttt-caagacacac--ttgataagttttaattgcatgatttatttgttcacttcctattttt 24683179  T
Q  280 aaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattg 367  Q
     |  ||| ||            | |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  24683178 cagtcacaccttcctgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcattg 24683079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 178 - 370
Target Start/End: Original strand, 18375389 - 18375589
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||||  |  ||| |||||||||||||||||||||||||||||||||||| ||    
T  18375389 aggaaaatgttatttctctagaaaaatagcatcaagaattttt-caagacac--aactggcaagttttaattgcatgatttatttgttcacttccta-tt 18375484  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || | |||| ||            | |||||| ||||||||||||||| || ||||||||||||| |||| ||||||||||||||||| ||||||| |||    
T  18375485 ttcagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattcttgaagaattcttgatgttatttttctagagatataacat 18375584  T
Q  366 tgctc 370  Q
    |||||    
T  18375585 tgctc 18375589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 54358312 - 54358215
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||||||||||||||||||||||||||||||| |||||||   |||||| ||||||||||||||||||||||||||||||||||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaattttt-caagacat--agttggcaagttttaattgcatgatttatttgttcacttcctatttt 54358216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 178 - 371
Target Start/End: Original strand, 17847540 - 17847737
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||| ||||||||||||||||||||||| ||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||    
T  17847540 aggaaaatgttatttctctcgaaaaatagcatcaagaattttt-caagacac--agttggcaagttttaattgcatgatttatttgttcactttctattt 17847636  T
Q  278 ttaaaccacgccgaca--aataatg-----cattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||    ||| ||  |   |||  ||     |||| |||||||||||| |||| ||||||| |||| || |||||||||||||| ||||||||||||||||    
T  17847637 ttctgtcacacctccttgaattgtggcgtgcattatgattgactgctttttaatcttgaagaattttttatgttatttttctagagatatagcattgctc 17847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 41633416 - 41633217
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||   || ||  || |||||||| ||| ||||||||||||||||||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagacaa--agctgacaaattttaattacat-atttatttgttcacttcctatttt 41633321  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            | ||| || ||||||||||||| |||||||||||||||||| |||| || |||||||||||||| ||||||| ||||    
T  41633320 tcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacatt 41633221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 41497890 - 41497977
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttca 267  Q
    |||||||||| |||||||| |||||||||||||| |||| || |||||||| |||||| ||||||||||||||||||||||||||||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaaaaattatt-caagacacacagttgataagttttaattgcatgatttatttgttca 41497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 37674000 - 37674182
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||||||||    ||  ||||||||||||||||||||||||||| ||||  |||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaattttt-caagacacgtg--tgacaagttttaattgcatgatttatttgttaactttttattttt 37674096  T
Q  280 aaaccacgcc-----gac-------aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
     | |||| ||     ||        ||||| | |||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  37674097 cagccacacctctttgaattgtagtaaatagtacattgtgattgactgctctttagtcttgaagaattcttgatgttatttttcta 37674182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 179 - 375
Target Start/End: Original strand, 23348112 - 23348321
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcct---at 275  Q
    |||||||||| ||||||||||||||||||||||| ||||||| ||||| ||  |   |  |||||||||||||||||||||||||||||||||||   ||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataattttt-caagaaac--aaccgacaagttttaattgcatgatttatttgttcacttcctcctat 23348208  T
Q  276 ttttaaaccacgccgac------------aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgtta-tttttctaaagatatag 362  Q
    |||| | |||| ||  |            ||||| || ||||||||||| || ||||||||||| || |||||||||||||| ||||| |||||||||||    
T  23348209 ttttcagccacacctccttgaattatggtaaatagtgtattgtgattgagtgttctttattcttaaagaattattgatgttattttttttaaagatatag 23348308  T
Q  363 cattgctcgatta 375  Q
    |||||||| ||||    
T  23348309 cattgctccatta 23348321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 26179332 - 26179409
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||| |||| |||||||| |||||||||||||||||| |||| || |||||||||||||| ||||||| ||||||||    
T  26179332 aaatagtgcactgtgattggctgctctttattcttgaagaattcttaatgttatttttctagagatataacattgctc 26179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 41878715 - 41878619
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| ||| | ||||||||||||||||||||||||| |||||||   |  ||  ||||||||||||||||||||||||||| |||||||||||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaattttt-caagacat--aactgacaagttttaattgcatgatttatttgtttacttcctattttt 41878619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 47281587 - 47281635
Alignment:
Q  238 taagttttaattgcatgatttatttgttcacttcctatttttaaaccac 286  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47281587 taagttttaattgcatgatttatttgttcacttcctatttttcaaccac 47281635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 4512160 - 4512259
Alignment:
Q  178 aggaaaatgctctttctctagaaaaa-tagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    ||||||||| | |||||||||||||| ||||||||||||||||| ||| || |  || ||| ||||||||||||||| ||||||||||| ||||||||||    
T  4512160 aggaaaatgttatttctctagaaaaaatagcatcaagaattttt-caatactc--aggtggcaagttttaattgcatcatttatttgtttacttcctatt 4512256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 52726074 - 52726031
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaattttt 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  52726074 taggaaaatgctatttctctagaaaaatagcatcaagaattttt 52726031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 41878399 - 41878321
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||| ||||||||||||| ||| ||||||||| |||| ||||  |||||||||||||||| ||||| | ||||||||    
T  41878399 caaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgttatttttctatagatacaacattgctc 41878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 47838942 - 47839038
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||| ||||| |||||||| |||||||||||||||||||||  |||||||  ||| |||| || |||||||||||||| | |||||||| || |||||||    
T  47838942 ggaacatgctatttctctataaaaatagcatcaagaatttt--caagaca--cagctggtgagatttaattgcatgatgtttttgttcattttctatttt 47839037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 47281657 - 47281735
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||| ||||||||||||    | |||||||||||||| |||| ||||||||||||||||| | ||||| ||||||||    
T  47281657 caaatagtgcattgtgatttgtcgttctttattcttgaagaattcttgatgttatttttctagacatataacattgctc 47281735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 54021241 - 54021282
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaattttt 220  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaattttt 54021282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 4098532 - 4098580
Alignment:
Q  322 attcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||||||| |||| ||||||||||||||||| ||||||| ||||||||    
T  4098532 attcttgaagaattcttgatgttatttttctagagatataacattgctc 4098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 23348159 - 23348116
Alignment:
Q  323 ttcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||    
T  23348159 ttcttgaaaaattattgatgctatttttctagagaaatagcatt 23348116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 370
Target Start/End: Original strand, 41497984 - 41498014
Alignment:
Q  340 atgttatttttctaaagatatagcattgctc 370  Q
    |||||||||||||||||||||||||||||||    
T  41497984 atgttatttttctaaagatatagcattgctc 41498014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 47282259 - 47282226
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaaga 214  Q
    |||||||| |||||||||||||||||||||||||    
T  47282259 aaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 6e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 181 - 370
Target Start/End: Complemental strand, 45166424 - 45166226
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||||  |||||||| || ||||||||||||||||||||||| |||| |||||||||     
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaattttt-caagac--gcagttggcaaattttaattgcatgatttatttgtccactccctatttttc 45166328  T
Q  281 aaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgc 368  Q
    | |||||||            | |||||| ||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||| ||||||| ||||||    
T  45166327 agccacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttattattgaagaattcttgatgttatttttctagagatataacattgc 45166228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 36517715 - 36517514
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||| |||||| ||||| | |||||||||||| ||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  36517715 aggaaaatgctatttatctagataaataacttcaagaattttt-caaaacac--agttggcaagttttaattgcatgatttatttgttcacttcctattt 36517619  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || |  ||| ||            | |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||| | |||||||||    
T  36517618 tttattcacacctccttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttgtctagatatatagcat 36517519  T
Q  366 tgctc 370  Q
    |||||    
T  36517518 tgctc 36517514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 370
Target Start/End: Original strand, 521763 - 521963
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||| |||||| ||||| ||||||||||||||  |||||||  |||||  ||||||||||||||||||||||||||||||||||||||||    
T  521763 ggaaaatgctatttatctagacaaatatcatcaagaatttttt-aagacac--agttgtcaagttttaattgcatgatttatttgttcacttcctatttt 521859  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            | |||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||| |||| | ||||||||||    
T  521860 tcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttatctagatatatagcatt 521959  T
Q  367 gctc 370  Q
    ||||    
T  521960 gctc 521963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 196 - 371
Target Start/End: Complemental strand, 20912350 - 20912166
Alignment:
Q  196 tagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------ 289  Q
    |||||||||||||||||||||||||  ||||||   || || |||||||||||||||||||||||||||||||||||||||||| |  ||| ||          
T  20912350 tagaaaaatagcatcaagaattttta-aagacat--agctgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctcctta 20912254  T
Q  290 ------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctcg 371  Q
          |||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||| | ||||||||    
T  20912253 aattatgacaaatagtgcattgttattgactgctctttattcttgaagaattcttgatgttatttttttaaagatattggattgctcg 20912166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 181 - 370
Target Start/End: Original strand, 38176390 - 38176588
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
    |||||| | ||||| |||||||||||||| |||||||||| ||||||||  |||||| |||||||||||||||| |||||||||||||||| |||||||     
T  38176390 aaaatgatatttctttagaaaaatagcattaagaattttt-caagacac--agttggcaagttttaattgcatgttttatttgttcacttcatatttttc 38176486  T
Q  281 aaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgc 368  Q
    | |||| ||            | |||||| ||||||| ||||| |||||||||||||||||| |||| |||||| |||||||||| ||||||| ||||||    
T  38176487 agccacacctccttgaattgaggcaaatagtgcattgcgattggctgctctttattcttgaagaattcttgatgatatttttctagagatataacattgc 38176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 178 - 371
Target Start/End: Complemental strand, 31788506 - 31788304
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||| ||||||| | |||||||||||| ||||||||  | |||  ||||||||| |||| ||||||||||||||||||||||||    
T  31788506 aggaaaatgttatttctctataaaaataacttcaagaattttt-caagacac--aattgacaagttttaactgcaagatttatttgttcacttcctattt 31788410  T
Q  278 ttaaaccacgccgac------------aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || || ||| ||  |            ||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| |||    
T  31788409 ttcaatcacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatatcat 31788310  T
Q  366 tgctcg 371  Q
    ||||||    
T  31788309 tgctcg 31788304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 178 - 370
Target Start/End: Original strand, 23642977 - 23643178
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||| ||  || |||||||| ||| |||||||||||||||||||||||    
T  23642977 aggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagaca--cagctgacaaattttaattccataatttatttgttcacttcctattt 23643073  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || |  ||| ||            | |||||| ||||||||||||||||  | |||||||||||| |||| ||||||||||||||||| ||||| | |||    
T  23643074 tttagtcacacctccttgaattgtggcaaatagtgcattgtgattgactaatatttattcttgaagaattcttgatgttatttttctagagatacaacat 23643173  T
Q  366 tgctc 370  Q
    |||||    
T  23643174 tgctc 23643178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 178 - 369
Target Start/End: Original strand, 50612872 - 50613072
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||| ||||| |||||||||||||||| ||| ||||  || ||  ||||||||||||||| ||||||||||||||||  |||||    
T  50612872 aggaaaatgttatttctctataaaaacagcatcaagaattttt-caatacac--agctgacaagttttaattgcataatttatttgttcactttatattt 50612968  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || |  ||| ||            | |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  50612969 ttcagtcacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagcat 50613068  T
Q  366 tgct 369  Q
    ||||    
T  50613069 tgct 50613072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 179 - 366
Target Start/End: Complemental strand, 52546942 - 52546746
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||| ||||||||||||||  |||||||| |  |    ||||||||||||||| ||||||||||||| ||||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaattttc-caagacacaccttac--aagttttaattgcataatttatttgttcatttcctatttt 52546846  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | |  ||| ||            ||||||||   ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  52546845 tcactcacacctcattgaattgtgacaaatagcacattgtgattggctgctctttattcttgaagaatttttgatgttatttttctaaagatatatcatt 52546746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 39145452 - 39145354
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||||||||||||||||||||||||||| | |||||||  ||||||  |||||||||||| ||||||| |||||||| |||||||||    
T  39145452 aggaaaatgctatttctctagaaaaatagcatcaagaatttgt-caagaca--cagttgtcaagttttaattgtatgatttctttgttcatttcctattt 39145356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 239 - 370
Target Start/End: Original strand, 1561311 - 1561454
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattct 326  Q
    |||||| |||||||||||||||||||||||||||||||||| | |||| ||            | |||||| |||||||||||||  |||||||||||||    
T  1561311 aagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 1561410  T
Q  327 tgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||| |||| ||||||||||||||||| ||||||| || |||||    
T  1561411 tgaagaattcttgatgttatttttctagagatataacactgctc 1561454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 34624598 - 34624674
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    ||||| ||||||||||||| |||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||    
T  34624598 aaatagtgcattgtgattggctgctctttattcttgaagaattctt-atgttatttttctagagatatagcattgctc 34624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 43203318 - 43203248
Alignment:
Q  300 gcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||||||||| |||||||||||| ||||| |||| |||||||||||||| || | ||||||||||||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgttatttttttagaaatatagcattgctc 43203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 51297021 - 51297121
Alignment:
Q  178 aggaaaatgctctttctctagaaaaa-tagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    ||||||||| | |||||||| ||||| ||||||||| ||||||| |||||| |  ||||| ||| ||||||||||||||||||||||||||||| |||||    
T  51297021 aggaaaatgttatttctctaaaaaaaatagcatcaa-aattttttcaagacgca-agttgataaattttaattgcatgatttatttgttcactttctatt 51297118  T
Q  277 ttt 279  Q
    |||    
T  51297119 ttt 51297121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 39145329 - 39145254
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattg 367  Q
    |||||| |||||||| |||| ||||| ||||||||| || |||| ||||| ||||||||||| |||||||||||||    
T  39145329 caaatagtgcattgtaattggctgctttttattcttaaagaattcttgatattatttttctagagatatagcattg 39145254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 34624535 - 34624572
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34624535 ttttaattgcatgatttatttgttcacttcctattttt 34624572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 544687 - 544634
Alignment:
Q  317 tctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||||||||||| |||| ||| ||||||||||||| |||||||| |||||||    
T  544687 tctttattcttgaagaattcttggtgttatttttctagagatataggattgctc 544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 22650451 - 22650482
Alignment:
Q  239 aagttttaattgcatgatttatttgttcactt 270  Q
    ||||||||||||||||||||||||||||||||    
T  22650451 aagttttaattgcatgatttatttgttcactt 22650482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 11358937 - 11358880
Alignment:
Q  314 tgctctttattcttgaaaaattattg-atgttatttttctaaagatatagcattgctc 370  Q
    |||||||||||| |||| |||| ||  |||||||||||||| ||||||||||||||||    
T  11358937 tgctctttattcgtgaagaatttttttatgttatttttctagagatatagcattgctc 11358880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 177 - 370
Target Start/End: Complemental strand, 34476101 - 34475899
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||| |||||||   || ||  ||||||||||||||||||| ||||||||||||||||||    
T  34476101 taggaaaaggctatttctctagaaaaatagtatcaagaattttt-caagacaa--agctgacaagttttaattgcatgattgatttgttcacttcctatt 34476005  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagca 364  Q
    ||| | |||| ||            | || ||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  34476004 tttcagccacacctccttgaattggggcagatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatatagca 34475905  T
Q  365 ttgctc 370  Q
    ||||||    
T  34475904 ttgctc 34475899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 190 - 370
Target Start/End: Complemental strand, 20809136 - 20808947
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    ||||||||||||||||||||||||||||||| ||||| |||  | ||| ||||||||||| |||| |||||| |||||||||||| |||| | ||||  |    
T  20809136 tttctctagaaaaatagcatcaagaattttt-caagatacg--ggtggcaagttttaattacatggtttattcgttcacttcctagttttcagccacatc 20809040  T
Q  290 ------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
                | ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  20809039 tccttgaattgtggcaaataatgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttctagagatatagcattgctc 20808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 177 - 369
Target Start/End: Original strand, 31032694 - 31032895
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||| | ||| ||||||||||||||||||||||||||| ||||| ||  |||||  |||||||||||||||||||||||||||||||| |||||    
T  31032694 taggaaaatgttatttttctagaaaaatagcatcaagaattttt-caagatac--agttgacaagttttaattgcatgatttatttgttcactttctatt 31032790  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagca 364  Q
    ||| | |||| ||            | |||||| ||||||||||||||||| |||||||||||||| |||| |||||| |||||||||| ||||||| ||    
T  31032791 tttcagccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttattcttgaagaattcttgatgatatttttctagagatataaca 31032890  T
Q  365 ttgct 369  Q
    |||||    
T  31032891 ttgct 31032895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 182 - 366
Target Start/End: Original strand, 9098571 - 9098761
Alignment:
Q  182 aaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaa 281  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||  || ||  ||||||||||||||||||||||||||||||||| |||| || |    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaattttt-caaaacac--agctgacaagttttaattgcatgatttatttgttcacttcgtattattca 9098667  T
Q  282 accacgcc---------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
     |||| ||         | || ||| ||||||||||||| ||||||||||||||| || |||| ||||||||||||||||| ||||||| ||||    
T  9098668 gccacaccttcttgaatggcagatagtgcattgtgattggctgctctttattcttaaagaattcttgatgttatttttctagagatatatcatt 9098761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 190 - 366
Target Start/End: Complemental strand, 1270360 - 1270175
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    ||||||||||||||||||||||| ||||||| ||||||||  |||||  |||||||||||||| ||||||||| |||||||||||||||| | |||| ||    
T  1270360 tttctctagaaaaatagcatcaaaaattttt-caagacac--agttgacaagttttaattgcacgatttatttattcacttcctatttttcagccacacc 1270264  T
Q  290 ------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
                | |||||| ||||||| |||||  ||||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  1270263 ttcttgaattgtggcaaatagtgcattgagattggttgctctttattcttgaagaattcttgatgttatttttctagagatatagcatt 1270175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 190 - 370
Target Start/End: Original strand, 29095532 - 29095721
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    ||||||||||||||||||||||| || |||| |||||||   |||||  |||||||||||||||||| | |||||||||||||||||||| | |||| ||    
T  29095532 tttctctagaaaaatagcatcaaaaaatttt-caagacat--agttgccaagttttaattgcatgatatctttgttcacttcctatttttcagccacacc 29095628  T
Q  290 ------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
                | |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||    
T  29095629 tccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacattgctc 29095721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 178 - 371
Target Start/End: Complemental strand, 42480324 - 42480120
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||| || |||   | ||||||||||||||| |||||||| |||| || ||||||    
T  42480324 aggaaaatgttatttctctagaaaaatagcatcaagaattttt-caagagacacagcatgcaagttttaattgcataatttatttattcattttctattt 42480226  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || | |||| ||            |  ||||||| |||||| |||||||||| |||||||||||| |||| |||||||||||||| || ||||||| |||    
T  42480225 ttcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattcttgaagaattcttgatgttatttttgtagagatataacat 42480126  T
Q  366 tgctcg 371  Q
    ||||||    
T  42480125 tgctcg 42480120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 47550990 - 47550894
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||| ||  || ||| |||||||||||||||||||||| |||||| |||||||||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaattttt-caagaaac--agctggcaagttttaattgcatgatttatatgttcatttcctattttt 47550894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 4194834 - 4194767
Alignment:
Q  302 attgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgct 369  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  4194834 attgtgattgactgttctttattcttgaagaattcttgatgttatttttctagagatatagcattgct 4194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 41646653 - 41646575
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctcg 371  Q
    |||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||| |||||||||||    
T  41646653 caaatagtgcattgtgattgactgctctttattcttgaagaatt-ctgatgttatttttctagagatacagcattgctcg 41646575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 178 - 372
Target Start/End: Complemental strand, 16255055 - 16254853
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||  |  ||  ||  |||||||| |||||||||||||||||||||||||     
T  16255055 aggaaaatgctatttctctagaaaaatagcatcaagaattttt-caatacac--aactgacaaaatttaattgtatgatttatttgttcacttcctatta 16254959  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcat 365  Q
    || | |||| ||            | |||||| ||||||||||||| ||| |||||||||||||| |||| || |||||||||||| |||||||||  ||    
T  16254958 ttcagccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttattcttgaagaattctt-atgttatttttccaaagatataatat 16254860  T
Q  366 tgctcga 372  Q
    |||||||    
T  16254859 tgctcga 16254853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 4624539 - 4624448
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||| |         |||||||||||||||||||||||||||||||||||||||    
T  4624539 aggaaaatgctatttctctagaaaaatagcatcaagaattatt-caagactc---------aagttttaattgcatgatttatttgttcacttcctattt 4624450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 370
Target Start/End: Complemental strand, 24135893 - 24135755
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttga 329  Q
    |||||||||||||||||||||||||||||||||||||| | |||| ||            | |||||  ||||||||||||| |||||||||||||||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttattcttga 24135796  T
Q  330 aaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    | |||| ||||||||||||||||  ||||||  ||||||||    
T  24135795 agaattcttgatgttatttttcttgagatatgtcattgctc 24135755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 34808079 - 34807936
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattct 326  Q
    |||||||||||||||||||||||| |||||||| ||||||| | |||| ||            || ||||| | |||||||||||||||||||||||| |    
T  34808079 aagttttaattgcatgatttatttattcacttcatatttttcagccacacctccttaaattatgataaatagtacattgtgattgactgctctttatttt 34807980  T
Q  327 tgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||| |||| ||||||||||||||| | |||||||  |||||||    
T  34807979 tgaagaattcttgatgttatttttcgagagatataaaattgctc 34807936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 190 - 366
Target Start/End: Complemental strand, 45010388 - 45010204
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    |||||||||||||||||||| |||||||||| ||| ||||  |  ||  || |||||||||||||||||||||||||||||| ||||||| | |||| ||    
T  45010388 tttctctagaaaaatagcataaagaattttt-caaaacac--atctgacaaattttaattgcatgatttatttgttcacttcttatttttcagccacacc 45010292  T
Q  290 -----------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
               ||||||||||||||| |  |||  |||||||||||||| || |||| |||||||||| ||| || ||||||||||||    
T  45010291 ttctgaattgtgacaaataatgcattatatttggatgctctttattcttaaagaattcttgatgttatctttttagagatatagcatt 45010204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 50663808 - 50663730
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttat-ttttctaaagatatagcattgctc 370  Q
    |||||||||||| | ||| ||||||||||||||||| |||||| |||||||||| |||| || ||||||||||||||||    
T  50663808 aaataatgcattatcattcactgctctttattcttgtaaaatttttgatgttattttttttagagatatagcattgctc 50663730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 7167455 - 7167523
Alignment:
Q  302 attgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||||||||||| |||||||||||||| |||| |||| ||||||||| || | ||||||||||||||    
T  7167455 attgtgattgactgttctttattcttgaagaattcttgacgttatttttttagaaatatagcattgctc 7167523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 41647424 - 41647356
Alignment:
Q  182 aaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcat 253  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||  |||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaattttt-caagaca--cagttgacaagttttaattgcat 41647356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 47550869 - 47550791
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
    |||||| |||||||| |||  |||||||||||||||||||  || || ||||||||||| || |||||| |||||||||    
T  47550869 caaatagtgcattgtaatttgctgctctttattcttgaaatttttttaatgttatttttatagagatattgcattgctc 47550791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 323
Target Start/End: Original strand, 44714929 - 44714960
Alignment:
Q  292 caaataatgcattgtgattgactgctctttat 323  Q
    ||||||||||||||||||||||||||||||||    
T  44714929 caaataatgcattgtgattgactgctctttat 44714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 2958753 - 2958787
Alignment:
Q  245 taattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||| |||||||||    
T  2958753 taattgcatgatttatttgttcactccctattttt 2958787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 2958836 - 2958869
Alignment:
Q  337 ttgatgttatttttctaaagatatagcattgctc 370  Q
    ||||||||||||||||| ||||||||||||||||    
T  2958836 ttgatgttatttttctagagatatagcattgctc 2958869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 180 - 367
Target Start/End: Complemental strand, 492865 - 492669
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacg-cagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||| | |||||||| |||||||||||||| ||||||| ||||||||| ||||    ||||||||||||||| ||||||||||||| ||||||||||    
T  492865 gaaaatgttatttctctaaaaaaatagcatcaa-aattttttcaagacacgacagtc---aagttttaattgcataatttatttgttcatttcctatttt 492770  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
    | | |||| ||            |||||||  ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||    
T  492769 tcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttctagagatataacatt 492670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 179 - 364
Target Start/End: Original strand, 7646773 - 7646967
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||| |||| |||||||| ||||||||  |  ||| ||||||||||||||||||||||||||||| ||||||||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaattttt-caagacac--atctggcaagttttaattgcatgatttatttgttcatttcctatttt 7646869  T
Q  279 taaaccacgc------------cgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagca 364  Q
    | |  ||| |             | |||||| ||||||||||||| |||||||||||| || || |||| ||||||||||||||||| ||||||||||    
T  7646870 tcagtcacacatccttgaattgtggcaaatagtgcattgtgattggctgctctttatttttaaagaattcttgatgttatttttctagagatatagca 7646967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 193 - 366
Target Start/End: Complemental strand, 25935694 - 25935512
Alignment:
Q  193 ctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc--- 289  Q
    |||||||||||||||||||||||||||| |||||||  ||| ||| ||||||||||| |||||||||||  ||||||| |||||||| | |||| ||       
T  25935694 ctctagaaaaatagcatcaagaattttt-caagaca--cagctggcaagttttaattacatgatttattctttcactttctatttttcagccacacctcc 25935598  T
Q  290 ---------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcatt 366  Q
             |||||||| | |||| |||||   ||||||||||||||||| |||| || |||||||||||||| ||||||| ||||    
T  25935597 ttaaattgtgacaaatagtacattatgattagatgctctttattcttgaataattcttaatgttatttttctagagatataacatt 25935512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 179 - 370
Target Start/End: Complemental strand, 17367016 - 17366850
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||       |||||||||||||||  ||||||||||||||||||        
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa-aattttt-caagacacgca-------agttttaattgcatgcattatttgttcacttcctag--- 17366929  T
Q  279 taaaccacgccgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgctc 370  Q
                 |||||| |||| |||||||  ||| ||||||||||||||||||| || ||||| |||||||| ||||||||||||||||    
T  17366928 -------------caaatagtgcagtgtgattagctgttctttattcttgaaaaattcttaatgttgtttttctagagatatagcattgctc 17366850  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 29487541 - 29487611
Alignment:
Q  206 gcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||| || |||||  ||||||||||| || ||||||||||||||||||||||| |||||||||    
T  29487541 gcatcaagaatttttcca-gacac--agttggtaagtgttgattgcatgatttatttgttcactccctattttt 29487611  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 28898438 - 28898477
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28898438 aagttttaattgcatgatttatttgttcactccctatttt 28898477  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 12607181 - 12607239
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||| |||| ||||||||||||||||||||||||||| |||| ||||| || |||||    
T  12607181 caaatagtgcactgtgattgactgctctttattcttgaagaattcttgatttttttttt 12607239  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 12607030 - 12607107
Alignment:
Q  179 ggaaaatgctctttctctag-aaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaattgcatgattt 258  Q
    |||||||| | ||||||||| |||||||| |||||||||||||  |||||||  | ||| |||||||||||||||||||||    
T  12607030 ggaaaatgttgtttctctaggaaaaatagtatcaagaatttttt-aagacac--aattgataagttttaattgcatgattt 12607107  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 12607123 - 12607156
Alignment:
Q  246 aattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||| ||||||||    
T  12607123 aattgcatgatttatttgttcactttctattttt 12607156  T

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Target: scaffold0132 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 614 - 537
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgct 369  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||| ||||||    
T  614 caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatataggattgct 537  T

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Target: scaffold0132; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 8574 - 8497
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttctaaagatatagcattgct 369  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||| ||||||    
T  8574 caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatataggattgct 8497  T

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Target: scaffold0339 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 13443 - 13378
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttttgcaagacacgcagttggtaagttttaa 247  Q
    ||||||||| | ||||||||||||||||||||||||||||||  |||||||  ||| |||||||||||||    
T  13443 aggaaaatgatatttctctagaaaaatagcatcaagaatttt--caagaca--cagatggtaagttttaa 13378  T

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Target: scaffold0188 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 370
Target Start/End: Original strand, 15981 - 16014
Alignment:
Q  337 ttgatgttatttttctaaagatatagcattgctc 370  Q
    ||||||||||||||||||||||||| ||||||||    
T  15981 ttgatgttatttttctaaagatataacattgctc 16014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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