View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17170_low_3 (Length: 423)
Name: NF17170_low_3
Description: NF17170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17170_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 192 - 409
Target Start/End: Original strand, 38536617 - 38536834
Alignment:
| Q |
192 |
tttctttgtgtgcgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38536617 |
tttctttgtgtgtgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
38536716 |
T |
|
| Q |
292 |
tgtattatttcctttccatgtaattttattctcatattttctcaatgtcatttaatgatgatacttacacgctttgaatcgtttaaaaattctctaatcc |
391 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
38536717 |
tgtattatttcctttccatgtaattttattctcatcttttctcaatgtcatttaatgatgatacttacacgctttgaatcgttcataaattctctaatcc |
38536816 |
T |
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| Q |
392 |
ttatcgtatttcatcccc |
409 |
Q |
| |
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|||||||||||||||||| |
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| T |
38536817 |
ttatcgtatttcatcccc |
38536834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 192 - 409
Target Start/End: Original strand, 38558835 - 38559052
Alignment:
| Q |
192 |
tttctttgtgtgcgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38558835 |
tttctttgtgtgtgttcctacacgacttctcgtcatacaatatttatctaatttctcatgtttagtattcgttctttcatatctcctttcataatattca |
38558934 |
T |
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| Q |
292 |
tgtattatttcctttccatgtaattttattctcatattttctcaatgtcatttaatgatgatacttacacgctttgaatcgtttaaaaattctctaatcc |
391 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
38558935 |
tgtattatttcctttccatgtaattttattctcatcttttctcaatgtcatttaatgatgatacttacacgctttgaatcgttcataaattctctaatcc |
38559034 |
T |
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| Q |
392 |
ttatcgtatttcatcccc |
409 |
Q |
| |
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|||||||||||||||||| |
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| T |
38559035 |
ttatcgtatttcatcccc |
38559052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 38536402 - 38536577
Alignment:
| Q |
1 |
catacataaatgcacataaatttgttacaagaaaattcactgatttgannnnnnnagtgtggatgatatcttacatgttatctatttgatcttcttctcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38536402 |
catacataaatgcacataaatttgttacaagaaaattcactgatttgatttttt-agtgtggatgatatcttacatgttatctatttgatcttcttctcg |
38536500 |
T |
|
| Q |
101 |
ttatttcttttccctctcatctctaattttgattttcagaagtctcataacgtacttgataatatgaaaatagacac |
177 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38536501 |
ttatttcttttccctctcgtctctaagtttgattttcagaagtctcataacgtgcttgataatatgaaaatagacac |
38536577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 38558620 - 38558795
Alignment:
| Q |
1 |
catacataaatgcacataaatttgttacaagaaaattcactgatttgannnnnnnagtgtggatgatatcttacatgttatctatttgatcttcttctcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38558620 |
catacataaatgcacataaatttgttacaagaaaattcactgatttgatttttt-agtgtggatgatatcttacatgttatctatttgatcttcttctcg |
38558718 |
T |
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| Q |
101 |
ttatttcttttccctctcatctctaattttgattttcagaagtctcataacgtacttgataatatgaaaatagacac |
177 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38558719 |
ttatttcttttccctctcgtctctaagtttgattttcagaagtctcataacgtgcttgataatatgaaaatagacac |
38558795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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