View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17170_low_4 (Length: 399)

Name: NF17170_low_4
Description: NF17170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17170_low_4
NF17170_low_4
[»] chr7 (4 HSPs)
chr7 (13-385)||(2534202-2534574)
chr7 (106-363)||(2525438-2525698)
chr7 (25-74)||(30452797-30452845)
chr7 (25-74)||(30456406-30456454)
[»] chr5 (3 HSPs)
chr5 (238-358)||(1772622-1772742)
chr5 (77-240)||(1772365-1772522)
chr5 (28-74)||(10321871-10321916)
[»] chr3 (2 HSPs)
chr3 (30-74)||(16441850-16441894)
chr3 (25-74)||(36326590-36326638)
[»] chr1 (1 HSPs)
chr1 (30-74)||(44085526-44085570)
[»] chr6 (2 HSPs)
chr6 (25-74)||(4834819-4834867)
chr6 (25-74)||(13886641-13886689)
[»] chr8 (2 HSPs)
chr8 (30-70)||(32519629-32519669)
chr8 (25-74)||(44762067-44762115)
[»] chr4 (2 HSPs)
chr4 (30-74)||(10129634-10129679)
chr4 (25-74)||(27387720-27387768)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 2534574 - 2534202
Alignment:
Q  13 aatataatcatgttctctctctaaattctaggagtttgatccctactcaaattgggtcgtattagattgagcccaatagcatgcatcgaagcctaagaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  2534574 aatataatcatgttctctctctaaattctaggagtttgatccctactcaaattgggtcgtatcagattgagcccaatagcatgcaccgaagcctaagaaa 2534475  T
Q  113 atgtatataccttattgccaggaacctcaatttctcgtgtggttgttgtgtcagagccgggtacaggttgattttgtctagaagaagaagcatcatgctg 212  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  2534474 atgtatataccttattgctaggaacctcaatttctcgtgtggttgttgtgtcagagccggatataggttgattttgtctagaagaagaagcataatgctg 2534375  T
Q  213 aaaggtgggatcaatagagctggaatcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctatta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  2534374 aaaggtgggatcaatagagctggaatcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtggggtcagtagtttcttctgtatta 2534275  T
Q  313 tctttagatacatcttgaacttcctctgaagaagcgttttcctctggctcaccaaaaccgtaacattaataac 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2534274 tctttagatacatcttgaacttcctctgaagaagcgttttcctctggctcaccaaaacagtaacattaataac 2534202  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 106 - 363
Target Start/End: Original strand, 2525438 - 2525698
Alignment:
Q  106 taagaaaatgtatataccttattgccaggaacctcaatttctcgtgtggttgttgtgtcagagccgggtacaggttgattttgtctagaagaagaagcat 205  Q
    ||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||| || |||||| |||||||    | |||||||||    
T  2525438 taagagaatgtacataccttattgctaggaacctcaatttcttgtgtggttgttgtgtcagacccggatataggttgcttttgtc---caaaagaagcat 2525534  T
Q  206 catgctgaaaggtgggatcaatagagctggaatcaacatg---aatctctt----tggcatcctcaacaggaatctctttggtatccgtagggtcagtag 298  Q
    |||||||||||||||||||||| |||||||||||||  ||   |||   ||    |||| ||||||||| |||||||||||||||| ||||| ||||  |    
T  2525535 catgctgaaaggtgggatcaattgagctggaatcaagttgttcaattgatttagatggc-tcctcaacatgaatctctttggtatcggtaggctcagccg 2525633  T
Q  299 tttcttctctattatctttagatacatcttgaacttcctctgaagaagcgttttcctctggctca 363  Q
    ||||||||  ||||||||||||| ||||||||| |||||| |||  ||| |||||||||||||||    
T  2525634 tttcttctgaattatctttagattcatcttgaatttcctcagaatgagcattttcctctggctca 2525698  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 30452797 - 30452845
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||||    
T  30452797 ttctccctctaaattct-ggagtgtgatccctactcgaattgggtcgtat 30452845  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 30456406 - 30456454
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||||    
T  30456406 ttctccctctaaattct-ggagtgtgatccctactcgaattgggtcgtat 30456454  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 1772622 - 1772742
Alignment:
Q  238 tcaacatgaatctctttggcatcctcaacaggaatctctttggtatccgtagggtcagtagtttcttctctattatctttagatacatcttgaacttcct 337  Q
    |||||| ||||||||||| ||||||| ||  ||||||| |||||||| ||||| |||| ||||||||||  |||||||||||||||||||||||||||||    
T  1772622 tcaacaggaatctctttgacatcctccaccagaatctcattggtatcagtaggctcagcagtttcttctgaattatctttagatacatcttgaacttcct 1772721  T
Q  338 ctgaagaagcgttttcctctg 358  Q
    | |||| ||| ||||||||||    
T  1772722 ccgaaggagcattttcctctg 1772742  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 1772365 - 1772522
Alignment:
Q  77 gattgagcccaatagcatgcatcgaagcctaagaaaatgtatataccttattgccaggaacctcaatttctcgtgtggttgttgtgtcagagccgggtac 176  Q
    |||||||| |||||  | ||||| |||||||||| |||  | |||||||||||| ||||||||| |||| |||||||   ||||||||||| || | ||     
T  1772365 gattgagctcaatactacgcatccaagcctaagagaatacacataccttattgctaggaacctcgatttttcgtgtg---gttgtgtcagacccagatat 1772461  T
Q  177 aggttgattttgtctagaagaagaagcatcatgctgaaaggtgggatcaatagagctggaatca 240  Q
    |||||| |||||||     ||||||| ||||||||| |||||||| ||||||||||||||||||    
T  1772462 aggttgcttttgtc---ctgaagaagtatcatgctgtaaggtggggtcaatagagctggaatca 1772522  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 10321916 - 10321871
Alignment:
Q  28 tctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||    
T  10321916 tctctctaaattat-ggagtgtgatccctactcaaattgggtcgtat 10321871  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 16441850 - 16441894
Alignment:
Q  30 tctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  16441850 tctctaaattctaggagtgtgatccctactcaaattggatcgtat 16441894  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 36326590 - 36326638
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||||    
T  36326590 ttctccctctaaattct-ggagtgtgatccctactcgaattgggtcgtat 36326638  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 44085570 - 44085526
Alignment:
Q  30 tctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  44085570 tctctaaattctaggagtgtgatccctactcaaattggatcgtat 44085526  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 4834819 - 4834867
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  4834819 ttctccctctaaattct-ggagtgtgatccctactcaaattgggtcgtat 4834867  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 13886641 - 13886689
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  13886641 ttctccctctaaattct-ggagtgtgatccctactcaaattgggtcgtat 13886689  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 32519669 - 32519629
Alignment:
Q  30 tctctaaattctaggagtttgatccctactcaaattgggtc 70  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  32519669 tctctaaattctaggagtgtgatccctactcgaattgggtc 32519629  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 44762067 - 44762115
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||||    
T  44762067 ttctccctctaaattct-ggagtgtgatccctactcgaattgggtcgtat 44762115  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 10129679 - 10129634
Alignment:
Q  30 tctctaaattcta-ggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||||||||||| ||||| |||||||||||| |||||||||||||    
T  10129679 tctctaaattctaaggagtgtgatccctactcgaattgggtcgtat 10129634  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 27387720 - 27387768
Alignment:
Q  25 ttctctctctaaattctaggagtttgatccctactcaaattgggtcgtat 74  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||||    
T  27387720 ttctccctctaaattct-ggagtgtgatccctactcgaattgggtcgtat 27387768  T

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