View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17170_low_5 (Length: 369)

Name: NF17170_low_5
Description: NF17170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17170_low_5
NF17170_low_5
[»] chr7 (5 HSPs)
chr7 (18-369)||(2534551-2534902)
chr7 (17-146)||(2524919-2525052)
chr7 (250-327)||(3219941-3220018)
chr7 (254-322)||(42513169-42513237)
chr7 (250-281)||(3756226-3756257)
[»] chr8 (2 HSPs)
chr8 (196-326)||(12691670-12691799)
chr8 (250-327)||(24248727-24248804)
[»] chr2 (2 HSPs)
chr2 (254-327)||(4472801-4472874)
chr2 (251-327)||(42904907-42904983)
[»] chr5 (4 HSPs)
chr5 (50-112)||(1772271-1772333)
chr5 (250-322)||(10321974-10322046)
chr5 (254-322)||(8123503-8123571)
chr5 (250-326)||(39003876-39003952)
[»] chr1 (3 HSPs)
chr1 (256-327)||(45066106-45066177)
chr1 (261-353)||(9893726-9893817)
chr1 (270-322)||(21076052-21076103)
[»] chr3 (4 HSPs)
chr3 (147-322)||(30911921-30912098)
chr3 (147-288)||(55211825-55211968)
chr3 (247-307)||(18864410-18864470)
chr3 (266-294)||(18864472-18864500)
[»] scaffold1064 (1 HSPs)
scaffold1064 (251-327)||(455-531)
[»] chr6 (3 HSPs)
chr6 (254-322)||(4834694-4834762)
chr6 (254-326)||(3293415-3293487)
chr6 (254-322)||(33242824-33242891)
[»] chr4 (1 HSPs)
chr4 (252-327)||(9236881-9236956)
[»] scaffold0526 (1 HSPs)
scaffold0526 (247-294)||(1172-1219)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 2534902 - 2534551
Alignment:
Q  18 tataattgatgagtaaacaaacaaaccattgcaaagaggaaatatgtgaagtacatcatgttcttcaaagaaacattgtcgagtttgattgtacataaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2534902 tataattgatgagtaaacaaacaaaccattgcaaagaggaaatatgtgaagtacatcatgttcttcaaagaaacattgtcgagtttgattgtacataaag 2534803  T
Q  118 cccttgacaataagaatccaacatgattgtgataggatacttagaataaggagtactgatgtgcgactcagttatttctagaagcaagtacgactcatcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2534802 cccttgacaataagaatccaacatgattgtgataggatacttagaataaggagtactgatgtgcgactcagttatttctagaagctagtacgactcatcc 2534703  T
Q  218 taatctagaacgatctatatgcattctgatatggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcatt 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2534702 taatctagaacgatctatatgcattctgatagggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcatt 2534603  T
Q  318 gtatgaccttcagatggaatgaatgaaaaatataatcatgttctctctctaa 369  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  2534602 gtatgaccttaaggtggaatgaatgaaaaatataatcatgttctctctctaa 2534551  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 2524919 - 2525052
Alignment:
Q  17 atataattgatgagtaaacaaacaaaccattgcaaagaggaaatatgtgaagtacatcatgttcttcaaagaaacattgtcgagtttgattgtacataaa 116  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  2524919 atataatcgatgagtaaacaaacaaaccattgcagagaggaaatatgtgaattacatcatgttcttcaaagaaacattgtcgagtttgattgtacacaaa 2525018  T
Q  117 gccc----ttgacaataagaatccaacatgattg 146  Q
    ||||    |||||||||||||||| |||||||||    
T  2525019 gcccaagattgacaataagaatccgacatgattg 2525052  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 3220018 - 3219941
Alignment:
Q  250 ggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||| || |||| |||||||||| |||||||||||||    
T  3220018 ggagtaatattgaatatgtttgggtacacttgtcttattgtgggtgtgcatttacctatataagaattgtatgacctt 3219941  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 42513237 - 42513169
Alignment:
Q  254 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 322  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  42513237 taatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatg 42513169  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 281
Target Start/End: Complemental strand, 3756257 - 3756226
Alignment:
Q  250 ggagtaatattgagtatgttagggtgcacttg 281  Q
    ||||||||||||||||||||||||||||||||    
T  3756257 ggagtaatattgagtatgttagggtgcacttg 3756226  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 12691799 - 12691670
Alignment:
Q  196 tagaagcaagtacgactcatcctaatctagaacgatcta-tatgcattctgatatggagtaatattgagtatgttagggtgcacttgtcttattgtgggt 294  Q
    |||||||||||| |||| ||| |||||||||| |||||| | ||||||||| ||  |||||||||||||||| |||||||||||||||||||||| ||||    
T  12691799 tagaagcaagtatgacttatcttaatctagaaggatctagtttgcattctgtta--gagtaatattgagtatattagggtgcacttgtcttattgcgggt 12691702  T
Q  295 atgaatttgcctatataagcattgtatgacct 326  Q
    |||||||| ||||||||| |||||||||||||    
T  12691701 atgaatttacctatataaacattgtatgacct 12691670  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 24248727 - 24248804
Alignment:
Q  250 ggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    |||||||||||||||||| || | |||||||||||| |||||||| |   ||| |||||||||| |||||||||||||    
T  24248727 ggagtaatattgagtatggtatgatgcacttgtcttgttgtgggtgttcgtttacctatataagtattgtatgacctt 24248804  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 4472801 - 4472874
Alignment:
Q  254 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    ||||||||| ||||||| ||||||||||||||||||||||  || |||| ||||||||||||||||||||||||    
T  4472801 taatattgaatatgttatggtgcacttgtcttattgtgggagtgtatttacctatataagcattgtatgacctt 4472874  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 42904907 - 42904983
Alignment:
Q  251 gagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    ||||| ||||||||||||| |||||| ||| ||||||||| | | |  |||| ||||||||| ||||||||||||||    
T  42904907 gagtactattgagtatgttggggtgcgcttatcttattgtagatgtacatttacctatataaacattgtatgacctt 42904983  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 1772271 - 1772333
Alignment:
Q  50 aaagaggaaatatgtgaagtacatcatgttcttcaaagaaacattgtcgagtttgattgtaca 112  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||||    
T  1772271 aaagaggaaatatgtgaagtacatcattatcttcaaaaaaacattgtccagtttgattgtaca 1772333  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 10322046 - 10321974
Alignment:
Q  250 ggagtaatattgagtatgttagggtgcacttgtctt-attgtgggtatgaatttgcctatataagcattgtatg 322  Q
    |||||| |||||||||  ||||||||||||||| || |||||||| |||  |||||||||||||||||||||||    
T  10322046 ggagtattattgagtactttagggtgcacttgtttttattgtgggaatgt-tttgcctatataagcattgtatg 10321974  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 8123503 - 8123571
Alignment:
Q  254 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 322  Q
    ||||||||||||||||||||| ||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  8123503 taatattgagtatgttagggtacacttatcttattatgagtatgcacaagtctatataagcattgtatg 8123571  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 39003876 - 39003952
Alignment:
Q  250 ggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacct 326  Q
    ||||||||||| | |||||||| || |||||||||||| |||||| |  |||| | |||||| ||||| ||||||||    
T  39003876 ggagtaatattaaatatgttagagtacacttgtcttatcgtgggtgtacatttacgtatataggcattatatgacct 39003952  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 45066177 - 45066106
Alignment:
Q  256 atattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    ||||||||||||||||||||||||||||||||||||  | || |||| |||||||||| ||||||| |||||    
T  45066177 atattgagtatgttagggtgcacttgtcttattgtgaatgtgcatttacctatataagtattgtataacctt 45066106  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 9893726 - 9893817
Alignment:
Q  261 gagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgaccttcagatggaatgaatgaaaaatataat 353  Q
    |||||||| |||||||||||||| ||| ||| | |||| |||| ||||||||||||| ||||||||    |||| || |||||||||||||||    
T  9893726 gagtatgtaagggtgcacttgtcatatcgtgagaatga-tttgtctatataagcattttatgacctcataatgggatcaatgaaaaatataat 9893817  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 21076103 - 21076052
Alignment:
Q  270 agggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 322  Q
    ||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||    
T  21076103 agggtgcacttgttttattgtggatatgtatttg-ctatataagcattgtatg 21076052  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 322
Target Start/End: Original strand, 30911921 - 30912098
Alignment:
Q  147 tgataggatacttagaataaggagtactgatgtg-cgactcagttatttctagaagcaagtacgactcatcctaatctagaacgatct-atatgcattct 244  Q
    |||||||||||||||||||| ||||||| |||||  ||||| |||| |||||||||  | || |||||| | |||||||||| ||||| | ||  ||  |    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatctt 30912020  T
Q  245 gatatggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 322  Q
    | || ||  ||||||||||||||||||||||||||| | |||||||| ||||| |   | ||||||||| ||||||||    
T  30912021 gttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtctatataagtattgtatg 30912098  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 55211968 - 55211825
Alignment:
Q  147 tgataggatacttagaataaggagtactgatgtg-cgactcagttatttctagaagcaagtacgactcatcctaatctagaacgatctatatgc-attct 244  Q
    |||||||||| ||||||||||||| ||| ||||| |||||| | || ||||| |||  |  |||||||||| ||||||| || |||| ||| |  ||  |    
T  55211968 tgataggatatttagaataaggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatatt 55211869  T
Q  245 gatatggagtaatattgagtatgttagggtgcacttgtcttatt 288  Q
    | || ||  ||||||||||||||||||||||||||| |||||||    
T  55211868 ggtaggggataatattgagtatgttagggtgcacttatcttatt 55211825  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 18864470 - 18864410
Alignment:
Q  247 tatggagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgccta 307  Q
    |||||||||||||| ||||| |||||||  | |||||||||||||||| || |||| ||||    
T  18864470 tatggagtaatatttagtatcttagggtatatttgtcttattgtgggtgtgcatttaccta 18864410  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 18864500 - 18864472
Alignment:
Q  266 tgttagggtgcacttgtcttattgtgggt 294  Q
    |||||||||||||||||||||||||||||    
T  18864500 tgttagggtgcacttgtcttattgtgggt 18864472  T

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Target: scaffold1064 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 455 - 531
Alignment:
Q  251 gagtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    ||||||||||||||||||||||||| |||  ||||||||| ||| || ||||  |||||||||||||||| ||||||    
T  455 gagtaatattgagtatgttagggtgtactcatcttattgtaggtgtgtatttaactatataagcattgtaagacctt 531  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 4834694 - 4834762
Alignment:
Q  254 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 322  Q
    ||||||||||||||||||||||||||| ||||||| || ||||| ||  | ||||||||||||||||||    
T  4834694 taatattgagtatgttagggtgcacttatcttattatgagtatgcataagtctatataagcattgtatg 4834762  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 3293487 - 3293415
Alignment:
Q  254 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacct 326  Q
    ||||||| | ||||||| |||||||||||||||||| |||| || ||||  |||||||| |||||||||||||    
T  3293487 taatattaaatatgttatggtgcacttgtcttattgcgggtgtgcatttatctatataaacattgtatgacct 3293415  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 33242824 - 33242891
Alignment:
Q  254 taatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatg 322  Q
    ||||||||||||||||| ||||||||| ||||||| || ||||| |   | ||||||||||||||||||    
T  33242824 taatattgagtatgtta-ggtgcacttatcttattatgagtatgcacaagtctatataagcattgtatg 33242891  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 9236881 - 9236956
Alignment:
Q  252 agtaatattgagtatgttagggtgcacttgtcttattgtgggtatgaatttgcctatataagcattgtatgacctt 327  Q
    ||||||||||||||||||| |||| |||  ||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  9236881 agtaatattgagtatgttaaggtgtactcatcttattgtaggtgtgtatttacctatataagcattgtaagacctt 9236956  T

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Target: scaffold0526 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 1172 - 1219
Alignment:
Q  247 tatggagtaatattgagtatgttagggtgcacttgtcttattgtgggt 294  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||    
T  1172 tatggagtaatattgagtatcttagggtgcatttgttttattgtgggt 1219  T

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