View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17170_low_7 (Length: 218)
Name: NF17170_low_7
Description: NF17170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17170_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 6089995 - 6090103
Alignment:
| Q |
69 |
taactttaaaacataatcttgtat-----atgtgtaaagaaaactgttttccttttttgataattttatcatctcaaagttgattatttcaataattaaa |
163 |
Q |
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| T |
6089995 |
taactttaaaacataatcgtttatattgcatgtgtaaagaaaactgttttccttttttgataattttatcatctcaaagttgattatttcaataattaaa |
6090094 |
T |
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| Q |
164 |
tcgtgacaa |
172 |
Q |
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| T |
6090095 |
tcgtgacaa |
6090103 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 6090120 - 6090152
Alignment:
| Q |
169 |
acaagagataaatcataatcaattaacacatct |
201 |
Q |
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| T |
6090120 |
acaagagataaatcataatcaattaacacatct |
6090152 |
T |
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